jgi.p|Nanoce1779_2|579510, mRNA_2218 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579510
Unique NamemRNA_2218
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1585
Alignment locationscaffold_4:1078659..1080621 -

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Properties
Property NameValue
TranscriptId579596
TrackFilteredModels2
ProteinId579510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1078659..1080621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579510gene_2218Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579510mRNA_2218-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2218CDS_2218Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2218 ID=mRNA_2218|Name=jgi.p|Nanoce1779_2|579510|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
ACAGGCCTTCCTGTGTGCCACGATCGCGGGGCCATTTGAACGCAAGGCAG
GTCTTGTTCTTGCTTCGTCTTCGATCTCTCCCCACTGCTGCCTGTGTCCT
GGTTGTGGAAGAGTGAGTGGAACGAAGAAGAGATTTTACACAAGGAGATA
TGGCGCCCAACGCAGAGCTTACCCGGCGACAGCGACCAGCGTCGAACCAT
CCAATCAAGCCCTCCGTCGCAGGCATGGAAAAGTCCTCGCGCAGCTCCAG
CTCCGAGAGCCTCAGCAACAGTAACAGCCAGCAAGGCATCTCCCATCTCA
GCCAAGAGGCCGCCAAAGTCAAACTGATTCGGGACGCTATCCGTGCCGAA
GACAAGCGTCTGCGGGCCGCCTATCCTTTCCCCTTGGGCGAGCACTGGCA
GAGCGCCGTTGGTCTCTTCATCTATGTAGCGGCATGGGCGGCTTGGGGAC
TTGCGACGCATGCTTGGTGGCACGGCTCGTTAAGCATGCCGGCGCTGATG
GTAATTAATGCGCTGGCTATCTCGCTTTTGCATGAGATGGAGCATGATTT
GATCCATGAGTTGTATTTTAAACGAAGCCCGTGGGTGCAGCATGTAATGT
TTGCTGGGATTTGGCTCATCAAGAGCAATGCCTCGCCGTGGTGGAGGAAG
TACTACCATCTGCGGCACCACCAATACAGTGGGCAGGTGAATGACGTGGA
GGAGCGCTTAATCGGCCTGGGCCTTCCTTGGTACTCGCCTAAGAGGCTGC
TCGTCACTCTGACGCCCGCAGGGACTTTGTTGGTGGCTAATGACATTGCA
AGGGATGATCCGGAATTTTCGCGCTTTAATTTGGTTTTATGCAATTCTCC
CGTCATTGTCCTGTCGACGGCAGCGATGCTTGTGCATTTAGTGGCGTCTT
TGGGAGGGGGTGAAGCGCTTGTGAGGGCGGGTCTCCTCAGCGAGGGCATG
TTTGCGATGCTGTCGCACCGGTTGTTGCCGGCCCTGTTTTTATACAACGC
CACGGTGAACTTCCCGAATGTGTTGCGGCAGAGTTGTCTGGTGATCATCT
CGACGTACTGCCACTATTATGGGGACATCCCAGAGAGGGACGTTTTCTTC
CAAACGCAAATTTTGGACCATCCGTTTCTGTGGCCGTTGCAGTTGTTCTG
TTTTAATTTCGGAGCGACGCATATCATTCATCACTTTGTGACACGGCAGC
CATTTTATTTGCGGCAGGTAGTGGCGTTTGGGGTGTTGCCGTTGATGAAG
GCACAGGGGTGCCGGCATAACGATATGAGCAACAATTTTAGGGGTAACAG
GTGGGCGGGCGGAGAGGACGCGGTCGACCATGAGGAGGAGACGACGACCT
TGACCGGGATCAAGGGGAGAGCGGGCAAGGGAGGGAATGGGGGAATGGGT
GGGGCGTCATCGACGGACACGAGCCCGACGACGAGCGATGATGAGGATGG
AGCGGAGGACCACATAAAGGGGGCGTAACGTGGAGGAGGAAGGAAGGGAG
GGAGGGGAGGAGGAAGTGTTTGACCGTTTTTCAAGCTCTTATTGGAGGGT
TGAAGGGGAGCCCGATGACCAGGCAGACAGAGAGA
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protein sequence of jgi.p|Nanoce1779_2|579510

>mRNA_2218-protein ID=mRNA_2218-protein|Name=jgi.p|Nanoce1779_2|579510|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MAPNAELTRRQRPASNHPIKPSVAGMEKSSRSSSSESLSNSNSQQGISHL
SQEAAKVKLIRDAIRAEDKRLRAAYPFPLGEHWQSAVGLFIYVAAWAAWG
LATHAWWHGSLSMPALMVINALAISLLHEMEHDLIHELYFKRSPWVQHVM
FAGIWLIKSNASPWWRKYYHLRHHQYSGQVNDVEERLIGLGLPWYSPKRL
LVTLTPAGTLLVANDIARDDPEFSRFNLVLCNSPVIVLSTAAMLVHLVAS
LGGGEALVRAGLLSEGMFAMLSHRLLPALFLYNATVNFPNVLRQSCLVII
STYCHYYGDIPERDVFFQTQILDHPFLWPLQLFCFNFGATHIIHHFVTRQ
PFYLRQVVAFGVLPLMKAQGCRHNDMSNNFRGNRWAGGEDAVDHEEETTT
LTGIKGRAGKGGNGGMGGASSTDTSPTTSDDEDGAEDHIKGA*
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mRNA from alignment at scaffold_4:1078659..1080621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2218 ID=mRNA_2218|Name=jgi.p|Nanoce1779_2|579510|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_4:1078659..1080621- (Nannochloropsis oceanica)
ACAGGCCTTCCTGTGTGCCACGATCGCGGGGCCATTTGAACGCAAGGCAG
GTCTTGTTCTTGCTTCGTCTTCGATCTCTCCCCACTGCTGCCTGTGTCCT
GGTTGTGGAAGAGTGAGTGGAACGAAGAAGAGATTTTACACAAGGAGATA
TGGCGCCCAACGCAGAGCTTACCCGGCGACAGCGACCAGCGTCGAACCAT
CCAATCAAGCCCTCCGTCGCAGGTGAGAAGTAGTCATGGGACACCAGACG
AGTAGGGGGAGTGAACGGTCGAATGCGATCTCTCGCTCTTGGTGTGTACG
CGTGTGCGCGTACACGTGTGTGTGTTGTGGATTATCCTGATCTTTCCCTC
CGATGGCACTGTGATGCTTTCCATGAAGGCGATGGGCTGAGACATGCTTG
TGTTGTCGCTGCCTGTGGTCAATTTGACTCAACCCAACCAACCCTTTCTA
CCTGCCCTCCACTTCAGTCAAATGCTCCAAGAACGGACTCAACCGATCGT
GTTCTTCCGTCTCTGGCTCTCTACGAATTTCGCACCCACAGCATTCATTT
CTTTCCACCTTCCCTACGTACACATCTCTCCTTCCCCTCCCTTAAATCAG
GCATGGAAAAGTCCTCGCGCAGCTCCAGCTCCGAGAGCCTCAGCAACAGT
AACAGCCAGCAAGGCATCTCCCATCTCAGCCAAGAGGCCGCCAAAGTCAA
ACTGATTCGGGACGCTATCCGTGCCGAAGACAAGCGTCTGCGGGCCGCCT
ATCCTTTCCCCTTGGGCGAGCACTGGCAGAGCGCCGTTGGTCTCTTCATC
TATGTAGCGGCATGGGCGGCTTGGGGACTTGCGACGCATGCTTGGTGGCA
CGGCTCGTTAAGCATGCCGGCGCTGATGGTAATTAATGCGCTGGCTATCT
CGCTTTTGCATGAGATGGAGCATGATTTGATCCATGAGTTGTATTTTAAA
CGAAGCCCGTGGGTGCAGCATGTAATGTTTGCTGGGATTTGGCTCATCAA
GAGCAATGCCTCGCCGTGGTGGAGGAAGTACTACCATCTGCGGCACCACC
AATACAGTGGGCAGGTGAATGACGTGGAGGAGCGCTTAATCGGCCTGGGC
CTTCCTTGGTACTCGCCTAAGAGGCTGCTCGTCACTCTGACGCCCGCAGG
GACTTTGTTGGTGGCTAATGACATTGCAAGGGATGATCCGGAATTTTCGC
GCTTTAATTTGGTTTTATGCAATTCTCCCGTCATTGTCCTGTCGACGGCA
GCGATGCTTGTGCATTTAGTGGCGTCTTTGGGAGGGGGTGAAGCGCTTGT
GAGGGCGGGTCTCCTCAGCGAGGGCATGTTTGCGATGCTGTCGCACCGGT
TGTTGCCGGCCCTGTTTTTATACAACGCCACGGTGAACTTCCCGAATGTG
TTGCGGCAGAGTTGTCTGGTGATCATCTCGACGTACTGCCACTATTATGG
GGACATCCCAGAGAGGGACGTTTTCTTCCAAACGCAAATTTTGGACCATC
CGTTTCTGTGGCCGTTGCAGTTGTTCTGTTTTAATTTCGGAGCGACGCAT
ATCATTCATCACTTTGTGACACGGCAGCCATTTTATTTGCGGCAGGTAGT
GGCGTTTGGGGTGTTGCCGTTGATGAAGGCACAGGGGTGCCGGCATAACG
ATATGAGCAACAATTTTAGGGGTAACAGGTGGGCGGGCGGAGAGGACGCG
GTCGACCATGAGGAGGAGACGACGACCTTGACCGGGATCAAGGGGAGAGC
GGGCAAGGGAGGGAATGGGGGAATGGGTGGGGCGTCATCGACGGACACGA
GCCCGACGACGAGCGATGATGAGGATGGAGCGGAGGACCACATAAAGGGG
GCGTAACGTGGAGGAGGAAGGAAGGGAGGGAGGGGAGGAGGAAGTGTTTG
ACCGTTTTTCAAGCTCTTATTGGAGGGTTGAAGGGGAGCCCGATGACCAG
GCAGACAGAGAGA
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Coding sequence (CDS) from alignment at scaffold_4:1078659..1080621-

>mRNA_2218 ID=mRNA_2218|Name=jgi.p|Nanoce1779_2|579510|organism=Nannochloropsis oceanica|type=CDS|length=2658bp|location=Sequence derived from alignment at scaffold_4:1078659..1080621- (Nannochloropsis oceanica)
GCATGGAAAAGTCCTCGCGCAGCTCCAGCTCCGAGAGCCTCAGCAACAGT
AACAGCCAGCAAGGCATCTCCCATCTCAGCCAAGAGGCCGCCAAAGTCAA
ACTGATTCGGGACGCTATCCGTGCCGAAGACAAGCGTCTGCGGGCCGCCT
ATCCTTTCCCCTTGGGCGAGCACTGGCAGAGCGCCGTTGGTCTCTTCATC
TATGTAGCGGCATGGGCGGCTTGGGGACTTGCGACGCATGCTTGGTGGCA
CGGCTCGTTAAGCATGCCGGCGCTGATGGTAATTAATGCGCTGGCTATCT
CGCTTTTGCATGAGATGGAGCATGATTTGATCCATGAGTTGTATTTTAAA
CGAAGCCCGTGGGTGCAGCATGTAATGTTTGCTGGGATTTGGCTCATCAA
GAGCAATGCCTCGCCGTGGTGGAGGAAGTACTACCATCTGCGGCACCACC
AATACAGTGGGCAGGTGAATGACGTGGAGGAGCGCTTAATCGGCCTGGGC
CTTCCTTGGTACTCGCCTAAGAGGCTGCTCGTCACTCTGACGCCCGCAGG
GACTTTGTTGGTGGCTAATGACATTGCAAGGGATGATCCGGAATTTTCGC
GCTTTAATTTGGTTTTATGCAATTCTCCCGTCATTGTCCTGTCGACGGCA
GCGATGCTTGTGCATTTAGTGGCGTCTTTGGGAGGGGGTGAAGCGCTTGT
GAGGGCGGGTCTCCTCAGCGAGGGCATGTTTGCGATGCTGTCGCACCGGT
TGTTGCCGGCCCTGTTTTTATACAACGCCACGGTGAACTTCCCGAATGTG
TTGCGGCAGAGTTGTCTGGTGATCATCTCGACGTACTGCCACTATTATGG
GGACATCCCAGAGAGGGACGTTTTCTTCCAAACGCAAATTTTGGACCATC
CGTTTCTGTGGCCGTTGCAGTTGTTCTGTTTTAATTTCGGAGCGACGCAT
ATCATTCATCACTTTGTGACACGGCAGCCATTTTATTTGCGGCAGGTAGT
GGCGTTTGGGGTGTTGCCGTTGATGAAGGCACAGGGGTGCCGGCATAACG
ATATGAGCAACAATTTTAGGGGTAACAGGTGGGCGGGCGGAGAGGACGCG
GTCGACCATGAGGAGGAGACGACGACCTTGACCGGGATCAAGGGGAGAGC
GGGCAAGGGAGGGAATGGGGGAATGGGTGGGGCGTCATCGACGGACACGA
GCCCGACGACGAGCGATGATGAGGATGGAGCGGAGGACCACATAAAGGGG
GCGTAAATGGCGCCCAACGCAGAGCTTACCCGGCGACAGCGACCAGCGTC
GAACCATCCAATCAAGCCCTCCGTCGCAGGCATGGAAAAGTCCTCGCGCA
GCTCCAGCTCCGAGAGCCTCAGCAACAGTAACAGCCAGCAAGGCATCTCC
CATCTCAGCCAAGAGGCCGCCAAAGTCAAACTGATTCGGGACGCTATCCG
TGCCGAAGACAAGCGTCTGCGGGCCGCCTATCCTTTCCCCTTGGGCGAGC
ACTGGCAGAGCGCCGTTGGTCTCTTCATCTATGTAGCGGCATGGGCGGCT
TGGGGACTTGCGACGCATGCTTGGTGGCACGGCTCGTTAAGCATGCCGGC
GCTGATGGTAATTAATGCGCTGGCTATCTCGCTTTTGCATGAGATGGAGC
ATGATTTGATCCATGAGTTGTATTTTAAACGAAGCCCGTGGGTGCAGCAT
GTAATGTTTGCTGGGATTTGGCTCATCAAGAGCAATGCCTCGCCGTGGTG
GAGGAAGTACTACCATCTGCGGCACCACCAATACAGTGGGCAGGTGAATG
ACGTGGAGGAGCGCTTAATCGGCCTGGGCCTTCCTTGGTACTCGCCTAAG
AGGCTGCTCGTCACTCTGACGCCCGCAGGGACTTTGTTGGTGGCTAATGA
CATTGCAAGGGATGATCCGGAATTTTCGCGCTTTAATTTGGTTTTATGCA
ATTCTCCCGTCATTGTCCTGTCGACGGCAGCGATGCTTGTGCATTTAGTG
GCGTCTTTGGGAGGGGGTGAAGCGCTTGTGAGGGCGGGTCTCCTCAGCGA
GGGCATGTTTGCGATGCTGTCGCACCGGTTGTTGCCGGCCCTGTTTTTAT
ACAACGCCACGGTGAACTTCCCGAATGTGTTGCGGCAGAGTTGTCTGGTG
ATCATCTCGACGTACTGCCACTATTATGGGGACATCCCAGAGAGGGACGT
TTTCTTCCAAACGCAAATTTTGGACCATCCGTTTCTGTGGCCGTTGCAGT
TGTTCTGTTTTAATTTCGGAGCGACGCATATCATTCATCACTTTGTGACA
CGGCAGCCATTTTATTTGCGGCAGGTAGTGGCGTTTGGGGTGTTGCCGTT
GATGAAGGCACAGGGGTGCCGGCATAACGATATGAGCAACAATTTTAGGG
GTAACAGGTGGGCGGGCGGAGAGGACGCGGTCGACCATGAGGAGGAGACG
ACGACCTTGACCGGGATCAAGGGGAGAGCGGGCAAGGGAGGGAATGGGGG
AATGGGTGGGGCGTCATCGACGGACACGAGCCCGACGACGAGCGATGATG
AGGATGGAGCGGAGGACCACATAAAGGGGGCGTAAATGGCGCCCAACGCA
GAGCTTACCCGGCGACAGCGACCAGCGTCGAACCATCCAATCAAGCCCTC
CGTCGCAG
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Synonyms
Publications