jgi.p|Nanoce1779_2|659798, mRNA_2000 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|659798
Unique Name	mRNA_2000
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2174
Alignment location	scaffold_4:537591..539764 -

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Properties


Property Name	Value
TranscriptId	659884
Track	FilteredModels2
ProteinId	659798

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:537591..539764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659798	gene_2000	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659798	mRNA_2000-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2000	CDS_2000	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:537591..539764-
coding sequence from alignment at scaffold_4:537591..539764-

mRNA sequence

>mRNA_2000 ID=mRNA_2000|Name=jgi.p|Nanoce1779_2|659798|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp
GGTTGACGAGGCCTGTTCGACGATTTCTCACATATTTTATACTAATAAAC
ATTCATACATCACACATATATTTCACAAGATACTAGAGGTTGGAAGGGAA
GGAGCTTCCTCTTTTGCCTCCTACTTTCCAAGCATCATCGGACCGGGAGT
CAAGCCATGGCGACAGCAAGGCGGCTAGCGGAGCAGTACGAGTTAGAGCG
GACACTACAAGAGGTCGAGAGGCATGGGTACCGTCGTGTGGCCCTGCAAT
TTCCTGACGACCAGCTCAAGGACGCACCCCAGGTGTGCCAATGGCTCATG
GCCCAGAGCAGAATACGACAGGATGAACAGCAGGCAGAGCAGGACGATGG
CACCGCACCATCAATCGTACCGCTCTTCTTTGTGATTGGTGACACCTCAT
ACGGCAGTTGCTGTGTAGACGAGGTAGCGGCGCAACACTTAAACGCGGAT
CTGGTCGTGCATTACGGACATGCTTGCCTCTCACCGACATCCCGCCTCCC
AGTCCTCTACGTCTTTGGCCGCCGCACCCTCCCTCAACCATCGCACGAAG
TCGCCACCTGCATAGCTACCACTCTCAAAACACAACAAAACGAGACACGC
GCCTTCATGTTTTACGATTTGGCATACAAATCAATCATTCCAGCGCTGGG
CGCGCTTGTCAATGAGCAGTTAAGTGAGTCGGGCACTCGTTTGTACATAG
CACGCCTCCCTTTAGCCGCCACCACGCCTTTGATGCCCACCTTAATGGGA
CAGCAGCCTCAAGATCAACATTCGCCTTCTGGGCAGGAGCAAGAACAAGG
AGACGAGGCGACACTAGGGGATGGACAAAAACGAGTCATTTTCGCAGGGG
GACTGGAATTGGAAATCGAGGAGGGAGAGGTGGAAGCCACACAACCTGTC
ATCATATACCTAGGATGTAGCAAGGGCAACAAGCAACTCGCCAATATCAT
GCTTCGCTTCAACACCTGCGTCTGCCTCTCCTATGACCCGACCGACCCTC
CCACCCTCCCTCCCTCTTCTTCTTCCTCCCCACCATCACAACCCCTACCC
CCACCTCTCCTTCAACCCCAATCCCTCCAAACCAACAAAGAGCTCAAACG
CCGTTATTACCTTGTTCAACGCGCGCGCGATGCCTCCGTGTTCGGTATCG
TTGTCGGCACCCTTGGCGTGGGCCGCTACATGGGCGTGGTCTCCGCCGTT
CGGCGCCTCATCGCCAACGCAAACAAAAAGTCTTATACCCTCCTAGTCGG
GAAACTCAATCCTGCCAAACTCGCAAATTTTGCAGAAATTGAAACCTTTG
TCCTCGTGGCCTGCCCCGAAGCATCCTTGCTGGACGGGGGGGGGAGAGAG
TACCATGCTCCGGTTGTAACGCCGTTGGAGTTGGAGATGGCCCTGGGGGG
AAAGGCCTGGGACGGGTTTTATAGTACGGACTTCAGGGAGTTAGGGTCGT
TGTTGCTCGAGGAGGGAGAGGGCAAAACGAACAAGGAAAGAATGGGGGAA
GAGGAGGAGAATGAGGGGCAGAAGGGGGAGGAGAAGGAGGGTGGGGATGA
GCCGTATTTTTCGCTTGTCTCGGGAGGGTTTAAGGGAGGGAGTGGGACAG
GAAGGGCAGGTGGTAGTGTATCGATGTCTAGTAGTAGTTGTAGCACGGCG
ATGACACAATTTTCAAGTCCGGCAGGTGATTTTTTGCAGTTAAGGGAATA
TAGGGGATTGGGGCATGACAAGCTCGCGGGGGCGAGGACGGAGGGCGAGG
AAGAGAGGGAGAATGGAGAGGAGGACGAGGACGAGGGAGGGCCTCAGGAT
GGGATTGTACAGGGTCGGACAGGAATTGCATCGGATTACGGAAATGTGTG
AACGACTCAACGAGACGAGTTGACCGACAACTCGTTGATGAAGTGCAGAC
AGAAACAGGAAAATATGAAGAAATTTGACGAAGAAAGTGGTGGAAAGCAT
CGTCGCGGATTTATCTTTCTTGTTTTGGGAGATGGTGGTGATCTCTTTTT
CCTAATCCTTCTTTTAATTGTCGATTTCTCCCGCACTGCGGCGATTCGAA
AGGATTTGCATTCACTGTGATAATTTCTAATCATGGTTTTCCTCCCTCCT
TTCCACCCCGTCATCCAACCCCAACAGCCTCTGGAGACTTGCCAGCGAAA
ACTGAAAGCTCTTCTCCCCTCCCC

protein sequence of jgi.p|Nanoce1779_2|659798

>mRNA_2000-protein ID=mRNA_2000-protein|Name=jgi.p|Nanoce1779_2|659798|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MATARRLAEQYELERTLQEVERHGYRRVALQFPDDQLKDAPQVCQWLMAQ
SRIRQDEQQAEQDDGTAPSIVPLFFVIGDTSYGSCCVDEVAAQHLNADLV
VHYGHACLSPTSRLPVLYVFGRRTLPQPSHEVATCIATTLKTQQNETRAF
MFYDLAYKSIIPALGALVNEQLSESGTRLYIARLPLAATTPLMPTLMGQQ
PQDQHSPSGQEQEQGDEATLGDGQKRVIFAGGLELEIEEGEVEATQPVII
YLGCSKGNKQLANIMLRFNTCVCLSYDPTDPPTLPPSSSSSPPSQPLPPP
LLQPQSLQTNKELKRRYYLVQRARDASVFGIVVGTLGVGRYMGVVSAVRR
LIANANKKSYTLLVGKLNPAKLANFAEIETFVLVACPEASLLDGGGREYH
APVVTPLELEMALGGKAWDGFYSTDFRELGSLLLEEGEGKTNKERMGEEE
ENEGQKGEEKEGGDEPYFSLVSGGFKGGSGTGRAGGSVSMSSSSCSTAMT
QFSSPAGDFLQLREYRGLGHDKLAGARTEGEEERENGEEDEDEGGPQDGI
VQGRTGIASDYGNV*

mRNA from alignment at scaffold_4:537591..539764-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2000 ID=mRNA_2000|Name=jgi.p|Nanoce1779_2|659798|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp|location=Sequence derived from alignment at scaffold_4:537591..539764- (Nannochloropsis oceanica)
GGTTGACGAGGCCTGTTCGACGATTTCTCACATATTTTATACTAATAAAC
ATTCATACATCACACATATATTTCACAAGATACTAGAGGTTGGAAGGGAA
GGAGCTTCCTCTTTTGCCTCCTACTTTCCAAGCATCATCGGACCGGGAGT
CAAGCCATGGCGACAGCAAGGCGGCTAGCGGAGCAGTACGAGTTAGAGCG
GACACTACAAGAGGTCGAGAGGCATGGGTACCGTCGTGTGGCCCTGCAAT
TTCCTGACGACCAGCTCAAGGACGCACCCCAGGTGTGCCAATGGCTCATG
GCCCAGAGCAGAATACGACAGGATGAACAGCAGGCAGAGCAGGACGATGG
CACCGCACCATCAATCGTACCGCTCTTCTTTGTGATTGGTGACACCTCAT
ACGGCAGTTGCTGTGTAGACGAGGTAGCGGCGCAACACTTAAACGCGGAT
CTGGTCGTGCATTACGGACATGCTTGCCTCTCACCGACATCCCGCCTCCC
AGTCCTCTACGTCTTTGGCCGCCGCACCCTCCCTCAACCATCGCACGAAG
TCGCCACCTGCATAGCTACCACTCTCAAAACACAACAAAACGAGACACGC
GCCTTCATGTTTTACGATTTGGCATACAAATCAATCATTCCAGCGCTGGG
CGCGCTTGTCAATGAGCAGTTAAGTGAGTCGGGCACTCGTTTGTACATAG
CACGCCTCCCTTTAGCCGCCACCACGCCTTTGATGCCCACCTTAATGGGA
CAGCAGCCTCAAGATCAACATTCGCCTTCTGGGCAGGAGCAAGAACAAGG
AGACGAGGCGACACTAGGGGATGGACAAAAACGAGTCATTTTCGCAGGGG
GACTGGAATTGGAAATCGAGGAGGGAGAGGTGGAAGCCACACAACCTGTC
ATCATATACCTAGGATGTAGCAAGGGCAACAAGCAACTCGCCAATATCAT
GCTTCGCTTCAACACCTGCGTCTGCCTCTCCTATGACCCGACCGACCCTC
CCACCCTCCCTCCCTCTTCTTCTTCCTCCCCACCATCACAACCCCTACCC
CCACCTCTCCTTCAACCCCAATCCCTCCAAACCAACAAAGAGCTCAAACG
CCGTTATTACCTTGTTCAACGCGCGCGCGATGCCTCCGTGTTCGGTATCG
TTGTCGGCACCCTTGGCGTGGGCCGCTACATGGGCGTGGTCTCCGCCGTT
CGGCGCCTCATCGCCAACGCAAACAAAAAGTCTTATACCCTCCTAGTCGG
GAAACTCAATCCTGCCAAACTCGCAAATTTTGCAGAAATTGAAACCTTTG
TCCTCGTGGCCTGCCCCGAAGCATCCTTGCTGGACGGGGGGGGGAGAGAG
TACCATGCTCCGGTTGTAACGCCGTTGGAGTTGGAGATGGCCCTGGGGGG
AAAGGCCTGGGACGGGTTTTATAGTACGGACTTCAGGGAGTTAGGGTCGT
TGTTGCTCGAGGAGGGAGAGGGCAAAACGAACAAGGAAAGAATGGGGGAA
GAGGAGGAGAATGAGGGGCAGAAGGGGGAGGAGAAGGAGGGTGGGGATGA
GCCGTATTTTTCGCTTGTCTCGGGAGGGTTTAAGGGAGGGAGTGGGACAG
GAAGGGCAGGTGGTAGTGTATCGATGTCTAGTAGTAGTTGTAGCACGGCG
ATGACACAATTTTCAAGTCCGGCAGGTGATTTTTTGCAGTTAAGGGAATA
TAGGGGATTGGGGCATGACAAGCTCGCGGGGGCGAGGACGGAGGGCGAGG
AAGAGAGGGAGAATGGAGAGGAGGACGAGGACGAGGGAGGGCCTCAGGAT
GGGATTGTACAGGGTCGGACAGGAATTGCATCGGATTACGGAAATGTGTG
AACGACTCAACGAGACGAGTTGACCGACAACTCGTTGATGAAGTGCAGAC
AGAAACAGGAAAATATGAAGAAATTTGACGAAGAAAGTGGTGGAAAGCAT
CGTCGCGGATTTATCTTTCTTGTTTTGGGAGATGGTGGTGATCTCTTTTT
CCTAATCCTTCTTTTAATTGTCGATTTCTCCCGCACTGCGGCGATTCGAA
AGGATTTGCATTCACTGTGATAATTTCTAATCATGGTTTTCCTCCCTCCT
TTCCACCCCGTCATCCAACCCCAACAGCCTCTGGAGACTTGCCAGCGAAA
ACTGAAAGCTCTTCTCCCCTCCCC

Coding sequence (CDS) from alignment at scaffold_4:537591..539764-

>mRNA_2000 ID=mRNA_2000|Name=jgi.p|Nanoce1779_2|659798|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at scaffold_4:537591..539764- (Nannochloropsis oceanica)
ATGGCGACAGCAAGGCGGCTAGCGGAGCAGTACGAGTTAGAGCGGACACT
ACAAGAGGTCGAGAGGCATGGGTACCGTCGTGTGGCCCTGCAATTTCCTG
ACGACCAGCTCAAGGACGCACCCCAGGTGTGCCAATGGCTCATGGCCCAG
AGCAGAATACGACAGGATGAACAGCAGGCAGAGCAGGACGATGGCACCGC
ACCATCAATCGTACCGCTCTTCTTTGTGATTGGTGACACCTCATACGGCA
GTTGCTGTGTAGACGAGGTAGCGGCGCAACACTTAAACGCGGATCTGGTC
GTGCATTACGGACATGCTTGCCTCTCACCGACATCCCGCCTCCCAGTCCT
CTACGTCTTTGGCCGCCGCACCCTCCCTCAACCATCGCACGAAGTCGCCA
CCTGCATAGCTACCACTCTCAAAACACAACAAAACGAGACACGCGCCTTC
ATGTTTTACGATTTGGCATACAAATCAATCATTCCAGCGCTGGGCGCGCT
TGTCAATGAGCAGTTAAGTGAGTCGGGCACTCGTTTGTACATAGCACGCC
TCCCTTTAGCCGCCACCACGCCTTTGATGCCCACCTTAATGGGACAGCAG
CCTCAAGATCAACATTCGCCTTCTGGGCAGGAGCAAGAACAAGGAGACGA
GGCGACACTAGGGGATGGACAAAAACGAGTCATTTTCGCAGGGGGACTGG
AATTGGAAATCGAGGAGGGAGAGGTGGAAGCCACACAACCTGTCATCATA
TACCTAGGATGTAGCAAGGGCAACAAGCAACTCGCCAATATCATGCTTCG
CTTCAACACCTGCGTCTGCCTCTCCTATGACCCGACCGACCCTCCCACCC
TCCCTCCCTCTTCTTCTTCCTCCCCACCATCACAACCCCTACCCCCACCT
CTCCTTCAACCCCAATCCCTCCAAACCAACAAAGAGCTCAAACGCCGTTA
TTACCTTGTTCAACGCGCGCGCGATGCCTCCGTGTTCGGTATCGTTGTCG
GCACCCTTGGCGTGGGCCGCTACATGGGCGTGGTCTCCGCCGTTCGGCGC
CTCATCGCCAACGCAAACAAAAAGTCTTATACCCTCCTAGTCGGGAAACT
CAATCCTGCCAAACTCGCAAATTTTGCAGAAATTGAAACCTTTGTCCTCG
TGGCCTGCCCCGAAGCATCCTTGCTGGACGGGGGGGGGAGAGAGTACCAT
GCTCCGGTTGTAACGCCGTTGGAGTTGGAGATGGCCCTGGGGGGAAAGGC
CTGGGACGGGTTTTATAGTACGGACTTCAGGGAGTTAGGGTCGTTGTTGC
TCGAGGAGGGAGAGGGCAAAACGAACAAGGAAAGAATGGGGGAAGAGGAG
GAGAATGAGGGGCAGAAGGGGGAGGAGAAGGAGGGTGGGGATGAGCCGTA
TTTTTCGCTTGTCTCGGGAGGGTTTAAGGGAGGGAGTGGGACAGGAAGGG
CAGGTGGTAGTGTATCGATGTCTAGTAGTAGTTGTAGCACGGCGATGACA
CAATTTTCAAGTCCGGCAGGTGATTTTTTGCAGTTAAGGGAATATAGGGG
ATTGGGGCATGACAAGCTCGCGGGGGCGAGGACGGAGGGCGAGGAAGAGA
GGGAGAATGGAGAGGAGGACGAGGACGAGGGAGGGCCTCAGGATGGGATT
GTACAGGGTCGGACAGGAATTGCATCGGATTACGGAAATGTGTGA

Synonyms

Publications