jgi.p|Nanoce1779_2|309602, mRNA_10121 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|309602
Unique NamemRNA_10121
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1115
Alignment locationscaffold_43:50573..51861 -

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Properties
Property NameValue
TranscriptId309688
TrackFilteredModels2
ProteinId309602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:50573..51861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|309602gene_10121Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|309602mRNA_10121-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10121CDS_10121Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10121 ID=mRNA_10121|Name=jgi.p|Nanoce1779_2|309602|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp
TGTGTCGTGGTTATTGGTGTTGAGACAACCGTAGATGTGCCTTTCGGGAA
TGCAGTTGTGATGATGTATGCGTGCGCCGCCTTGAAGCTTCCCGTCATCC
CCTCCCTTTCTCAACCATTACCACGCAAAAACAAACACACATGCACACAC
TCACAGTGTGCAGCGGCAACAACAGCCACCATACTCCTTCTTTTCTTCCT
GTCGCCCTAATCCTGCCCACCCTTTTTTGACCAGAAAGGGGAGCGCCTCT
CCTCATCTCGCCTTTTCTTCCCCTCCGCCCATCACGGCAGCAGGCCCATT
CACGACAGCAGTACACATGCACATGTCCTCCTCCTCCCTACCCTCCATGC
CGCTGCTCAACCCCACCACTACGGGACAAAGGAGAAACACACATAGCGTC
TTGTCAAGACCAGGACAAGCGTTTGGTCTGAGGCGAGAGCGAGGCCATCC
CCTACAGCAGCAGCAAGGGAGTAGTATCTCAGTCCGCACGCTGCTGATGG
TGGTGTTGATAGTGCTAGTAACAGCAGTGGCAGTGGTCGTGGATGCCGAG
GGAGGAAAAAGAAGAGGTGGAAGTAGTAGCAGAGTGAGGAGGGTGGAAGG
TGGGTTTATCGTGCCCCTTGGTGGGACGTCTTGCGGGCTCCTGGGGAGTA
GTAGGAGCAGCAAGAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCAGCAGA
AGAAGCAGCAGCAATGACGACGACGCGGATCTCTTGAAGGCCTTTGGGAA
GGGAAAAGGCAAGCACCAACAAGCCAAAAGCCGTAAGAAGAAGAACAAGT
ACGCCTCCTTCAGTCAAGTAGGAGGAGGAAAAGACCCCTTGGAGGAGGCC
ATGCTCAGGGTAGGGAGGGAGGGAAGGAGGGAGGGCAAGCATACTGTACG
ATGTAAACGCCCCATTTTGGTTGCTTTTTCTTCTTTCTCTTGGGGTTCTT
TCCCCGCCCGTTCTTGAGAGAAAGGGCGTGGATATAATGCCGTGACCACC
TCCTTCTCTCTCTCCCTCTGTTTCTCTCTCCTTTCCCTGTATATATGTAC
ATAAATATAATGCCGTGACTACCTCTCTCTCTCTCCCTCTGTTTCTCACT
CCTTTCCCTGTTTTT
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protein sequence of jgi.p|Nanoce1779_2|309602

>mRNA_10121-protein ID=mRNA_10121-protein|Name=jgi.p|Nanoce1779_2|309602|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MHMSSSSLPSMPLLNPTTTGQRRNTHSVLSRPGQAFGLRRERGHPLQQQQ
GSSISVRTLLMVVLIVLVTAVAVVVDAEGGKRRGGSSSRVRRVEGGFIVP
LGGTSCGLLGSSRSSKSSSSSSGGSSSRRSSSNDDDADLLKAFGKGKGKH
QQAKSRKKKNKYASFSQVGGGKDPLEEAMLRVGREGRREGKHTVRCKRPI
LVAFSSFSWGSFPARS*
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mRNA from alignment at scaffold_43:50573..51861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10121 ID=mRNA_10121|Name=jgi.p|Nanoce1779_2|309602|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp|location=Sequence derived from alignment at scaffold_43:50573..51861- (Nannochloropsis oceanica)
TGTGTCGTGGTTATTGGTGTTGAGACAACCGTAGATGTGCCTTTCGGGAA
TGCAGTTGTGATGATGTATGCGTGCGCCGCCTTGAAGCTTCCCGTCATCC
CCTCCCTTTCTCAACCATTACCACGCAAAAACAAACACACATGCACACAC
TCACAGTGTGCAGCGGCAACAACAGCCACCATACTCCTTCTTTTCTTCCT
GTCGCCCTAATCCTGCCCACCCTTTTTTGACCAGAAAGGGGAGCGCCTCT
CCTCATCTCGCCTTTTCTTCCCCTCCGCCCATCACGGCAGCAGGCCCATT
CACGACAGCAGTACACATGCACATGTCCTCCTCCTCCCTACCCTCCATGC
CGCTGCTCAACCCCACCACTACGGGACAAAGGAGAAACACACATAGCGTC
TTGTCAAGACCAGGACAAGCGTTTGGTCTGAGGCGAGAGCGAGGCCATCC
CCTACAGCAGCAGCAAGGGAGTAGTATCTCAGTCCGCACGCTGCTGATGG
TGGTGTTGATAGTGCTAGTAACAGCAGTGGCAGTGGTCGTGGATGCCGAG
GGAGGAAAAAGAAGAGGTGGAAGTAGTAGCAGAGTGAGGAGGGTGGAAGG
TGGGTTTATCGTGCCCCTTGGTGGGACGTCTTGCGGGCTCCTGGGGAGTA
GTAGGAGCAGCAAGAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCAGCAGA
AGAAGCAGCAGCAATGACGACGACGCGGATCTCTTGAAGGCCTTTGGGAA
GGGAAAAGGTGTGAAAGGAGGGAGGGAGGGAAAATGTAAAGGCAGCGAAT
CAGATGGCATGGGCGGGACCGAGACTGACTTACAAAAAACACCAGACATG
ACCCACCCACCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCCTCCCTCCTTTCTTCTTTCTTTTCCCCCAGGCAAGCACCAACAAGCCA
AAAGCCGTAAGAAGAAGAACAAGTACGCCTCCTTCAGTCAAGTAGGAGGA
GGAAAAGACCCCTTGGAGGAGGCCATGCTCAGGGTAGGGAGGGAGGGAAG
GAGGGAGGGCAAGCATACTGTACGATGTAAACGCCCCATTTTGGTTGCTT
TTTCTTCTTTCTCTTGGGGTTCTTTCCCCGCCCGTTCTTGAGAGAAAGGG
CGTGGATATAATGCCGTGACCACCTCCTTCTCTCTCTCCCTCTGTTTCTC
TCTCCTTTCCCTGTATATATGTACATAAATATAATGCCGTGACTACCTCT
CTCTCTCTCCCTCTGTTTCTCACTCCTTTCCCTGTTTTT
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Coding sequence (CDS) from alignment at scaffold_43:50573..51861-

>mRNA_10121 ID=mRNA_10121|Name=jgi.p|Nanoce1779_2|309602|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_43:50573..51861- (Nannochloropsis oceanica)
GCAAGCACCAACAAGCCAAAAGCCGTAAGAAGAAGAACAAGTACGCCTCC
TTCAGTCAAGTAGGAGGAGGAAAAGACCCCTTGGAGGAGGCCATGCTCAG
GGTAGGGAGGGAGGGAAGGAGGGAGGGCAAGCATACTGTACGATGTAAAC
GCCCCATTTTGGTTGCTTTTTCTTCTTTCTCTTGGGGTTCTTTCCCCGCC
CGTTCTTGAATGCACATGTCCTCCTCCTCCCTACCCTCCATGCCGCTGCT
CAACCCCACCACTACGGGACAAAGGAGAAACACACATAGCGTCTTGTCAA
GACCAGGACAAGCGTTTGGTCTGAGGCGAGAGCGAGGCCATCCCCTACAG
CAGCAGCAAGGGAGTAGTATCTCAGTCCGCACGCTGCTGATGGTGGTGTT
GATAGTGCTAGTAACAGCAGTGGCAGTGGTCGTGGATGCCGAGGGAGGAA
AAAGAAGAGGTGGAAGTAGTAGCAGAGTGAGGAGGGTGGAAGGTGGGTTT
ATCGTGCCCCTTGGTGGGACGTCTTGCGGGCTCCTGGGGAGTAGTAGGAG
CAGCAAGAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCAGCAGAAGAAGCA
GCAGCAATGACGACGACGCGGATCTCTTGAAGGCCTTTGGGAAGGGAAAA
GGCAAGCACCAACAAGCCAAAAGCCGTAAGAAGAAGAACAAGTACGCCTC
CTTCAGTCAAGTAGGAGGAGGAAAAGACCCCTTGGAGGAGGCCATGCTCA
GGGTAGGGAGGGAGGGAAGGAGGGAGGGCAAGCATACTGTACGATGTAAA
CGCCCCATTTTGGTTGCTTTTTCTTCTTTCTCTTGGGGTTCTTTCCCCGC
CCGTTCTTGAATGCACATGTCCTCCTCCTCCCTACCCTCCATGCCGCTGC
TCAACCCCACCACTACGGGACAAAGGAGAAACACACATAGCGTCTTGTCA
AGACCAGGACAAGCGTTTGGTCTGAGGCGAGAGCGAGGCCATCCCCTACA
GCAGCAGCAAGGGAGTAGTATCTCAGTCCGCACGCTGCTGATGGTGGTGT
TGATAGTGCTAGTAACAGCAGTGGCAGTGGTCGTGGATGCCGAGGGAGGA
AAAAGAAGAGGTGGAAGTAGTAGCAGAGTGAGGAGGGTGGAAGGTGGGTT
TATCGTGCCCCTTGGTGGGACGTCTTGCGGGCTCCTGGGGAGTAGTAGGA
GCAGCAAGAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCAGCAGAAGAAGC
AGCAGCAATGACGACGACGCGGATCTCTTGAAGGCCTTTGGGAAGGGAAA
AG
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Synonyms
Publications