jgi.p|Nanoce1779_2|307489, mRNA_10010 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|307489
Unique Name	mRNA_10010
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1579
Alignment location	scaffold_42:31007..32746 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	307575
Track	FilteredModels2
ProteinId	307489

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:31007..32746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|307489	gene_10010	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|307489	mRNA_10010-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10010	CDS_10010	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:31007..32746+
coding sequence from alignment at scaffold_42:31007..32746+

mRNA sequence

>mRNA_10010 ID=mRNA_10010|Name=jgi.p|Nanoce1779_2|307489|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp
ATTTCTCCTAGGGACCGTACATCTGTGCCAGCCCGTTGCAGCAGCACGAC
GACGAAAAAAGTGCTGCGTTCATCTCCTAAATTCATTCGTGCCACGCCCA
CAACTCCGTCACAGACTTACCACCTTTTCCCCACACACGTCTGCGTGTCG
TAGATGGTGTAGCAACGCGATTAGATATTGGTTCATTCAGGCATTTAGAC
GAAAAGCAAGCCTGACTTGGCCCATCAAATACTACATATGCCCTCGTTTT
TCGTGGCCGGCAGCAAGCAATTGCAGCACCGAGGCGTGAGAAGACAAACT
ATGTCGTCCCCACCCGCTGGCACTATAAAGCGGGACTATGTGAGAGAAAA
CCGCAAAGCGATCCGAGAGCTGGAAGACGACGTGCGGAGCCAACGTGCGT
TTACGGACGAGATTATGCGAATGGATGAAGTCAAAACAAAATGGAAGATG
AACAGGTTCCAGGACATCGAGAGCAAGATGACAGCGATCATGAATAAATC
CGGCGACCGTCTCCAGTCGCCTTCATCCGGCTCACCGGTATCTACCACCG
CTACGGCTGCATTCACGTCCCCGGCAGCAGCAACAACAGCAGCAGCAGCA
GCAGCAGCAAGTCACTCCTCGATCATCCACCCAGCTCCTCCCTCAACCCC
TTTCCTTCAGCGTGGCACCCTCGAACAACGCATTCTCGACCAAAGCACTA
AGGTACGAGAAAAAATTAGGACACATCATGCCTCTGCCCTCTTCCTCTCC
TCTCCCACCGCAGCTGAGGCAGCAAAAGCAGCTTCCCTCTCTCATCTGGA
ACGCAAGCCCGCCGTGCCTCGCGCTCGCGACTTCGTGCCCTTGCTCCGTC
CCGCGGTTTCCAAAAACCACATCATCAATAATCGACGAGCGGCTATAAAG
CTTTCTTCTTCCTCTTCTTCTTCTTGTTCTTTTCCTTCTTCTTCTTCTTC
TTCCTCCTCCTCCTCCTCGTCCTCCTCCCCTTCTCCCTGCTCCTCCAACA
GCAGCAGTAATACGAGCACCGGTGGATGCGCCCGTCACAAAGCCTTCGGG
CGTATTCCTTCCTATCTCCTTGCAATCAAGCAAGCTCGCCTTGCCGCCGA
GGCGCTCAGACGGGCGGCCATGAAAGGTCGACATTCTGATATCCCTCCAG
GGATGCGACTCCTGACTGATGCAGAACGAAGCGAAGCCCTTGCTGCCTTG
GATGCGCAAGAACGGGAAATACAATCGATGTTGCTCAAGATCCCCTTGAG
AGTGGACACACCAAGTATGGCTCGAAAGAAGCATGCTTTAGAGGCACGCT
TGACGGAGGTGGGGACGAGTCGGGAGCTCTTTGCCAAGCCTCGGGTGTTG
ATTAAAGACGGATGAAGATGGTGAGGGAAGAGTAAGTAAGTGTGGATTTA
GGATAGAGAGAAAGTGCCACGATGAAAGGGGACAGGGAATACTGACAGGC
TTATAACAATCGAGAGCATGAAGTGGCTTTGGAAAGGTGGAGAGATCATA
TCTGAAAGGAATCAAATGTAATAGTTGTGGAATTGGCCGATGCGGGAGGG
ATGAGGCGTTACTCTTGATAAATAATGAC

protein sequence of jgi.p|Nanoce1779_2|307489

>mRNA_10010-protein ID=mRNA_10010-protein|Name=jgi.p|Nanoce1779_2|307489|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MPSFFVAGSKQLQHRGVRRQTMSSPPAGTIKRDYVRENRKAIRELEDDVR
SQRAFTDEIMRMDEVKTKWKMNRFQDIESKMTAIMNKSGDRLQSPSSGSP
VSTTATAAFTSPAAATTAAAAAAASHSSIIHPAPPSTPFLQRGTLEQRIL
DQSTKVREKIRTHHASALFLSSPTAAEAAKAASLSHLERKPAVPRARDFV
PLLRPAVSKNHIINNRRAAIKLSSSSSSSCSFPSSSSSSSSSSSSSSPSP
CSSNSSSNTSTGGCARHKAFGRIPSYLLAIKQARLAAEALRRAAMKGRHS
DIPPGMRLLTDAERSEALAALDAQEREIQSMLLKIPLRVDTPSMARKKHA
LEARLTEVGTSRELFAKPRVLIKDG*

mRNA from alignment at scaffold_42:31007..32746+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10010 ID=mRNA_10010|Name=jgi.p|Nanoce1779_2|307489|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp|location=Sequence derived from alignment at scaffold_42:31007..32746+ (Nannochloropsis oceanica)
ATTTCTCCTAGGGACCGTACATCTGTGCCAGCCCGTTGCAGCAGCACGAC
GACGAAAAAAGTGCTGCGTTCATCTCCTAAATTCATTCGTGCCACGCCCA
CAACTCCGTCACAGACTTACCACCTTTTCCCCACACACGTCTGCGTGTCG
TAGATGGTGTAGCAACGCGATTAGATATTGGTTCATTCAGGCATTTAGAC
GAAAAGCAAGCCTGACTTGGCCCATCAAATACTACATATGCCCTCGTTTT
TCGTGGCCGGCAGCAAGCAATTGCAGCACCGAGGCGTGAGAAGGTACATA
TGAAATTGCAGATAATTGACATAAGTACTTCCACTCATCTCCACCTACTA
TTTGCGTGGTGAAATCAGACAAACTATGTCGTCCCCACCCGCTGGCACTA
TAAAGCGGGACTATGTGAGAGAAAACCGCAAAGCGATCCGAGAGCTGGAA
GACGACGTGCGGAGCCAACGTGCGTTTACGGACGAGATTATGCGAATGGA
TGAAGTCAAAACAAAATGGAAGATGAACAGGTTCCAGGACATCGAGAGCA
AGATGACAGCGATCATGGTAAGGAGGGAGTACGGGAATAAGGGAAGACGC
AAGAGACTGTGCTAGCGTCATTTTAAAGACGTCACGTTTTCCCAAAAATC
CAGAATAAATCCGGCGACCGTCTCCAGTCGCCTTCATCCGGCTCACCGGT
ATCTACCACCGCTACGGCTGCATTCACGTCCCCGGCAGCAGCAACAACAG
CAGCAGCAGCAGCAGCAGCAAGTCACTCCTCGATCATCCACCCAGCTCCT
CCCTCAACCCCTTTCCTTCAGCGTGGCACCCTCGAACAACGCATTCTCGA
CCAAAGCACTAAGGTACGAGAAAAAATTAGGACACATCATGCCTCTGCCC
TCTTCCTCTCCTCTCCCACCGCAGCTGAGGCAGCAAAAGCAGCTTCCCTC
TCTCATCTGGAACGCAAGCCCGCCGTGCCTCGCGCTCGCGACTTCGTGCC
CTTGCTCCGTCCCGCGGTTTCCAAAAACCACATCATCAATAATCGACGAG
CGGCTATAAAGCTTTCTTCTTCCTCTTCTTCTTCTTGTTCTTTTCCTTCT
TCTTCTTCTTCTTCCTCCTCCTCCTCCTCGTCCTCCTCCCCTTCTCCCTG
CTCCTCCAACAGCAGCAGTAATACGAGCACCGGTGGATGCGCCCGTCACA
AAGCCTTCGGGCGTATTCCTTCCTATCTCCTTGCAATCAAGCAAGCTCGC
CTTGCCGCCGAGGCGCTCAGACGGGCGGCCATGAAAGGTCGACATTCTGA
TATCCCTCCAGGGATGCGACTCCTGACTGATGCAGAACGAAGCGAAGCCC
TTGCTGCCTTGGATGCGCAAGAACGGGAAATACAATCGATGTTGCTCAAG
ATCCCCTTGAGAGTGGACACACCAAGTATGGCTCGAAAGAAGCATGCTTT
AGAGGCACGCTTGACGGAGGTGGGGACGAGTCGGGAGCTCTTTGCCAAGC
CTCGGGTGTTGATTAAAGACGGATGAAGATGGTGAGGGAAGAGTAAGTAA
GTGTGGATTTAGGATAGAGAGAAAGTGCCACGATGAAAGGGGACAGGGAA
TACTGACAGGCTTATAACAATCGAGAGCATGAAGTGGCTTTGGAAAGGTG
GAGAGATCATATCTGAAAGGAATCAAATGTAATAGTTGTGGAATTGGCCG
ATGCGGGAGGGATGAGGCGTTACTCTTGATAAATAATGAC

Coding sequence (CDS) from alignment at scaffold_42:31007..32746+

>mRNA_10010 ID=mRNA_10010|Name=jgi.p|Nanoce1779_2|307489|organism=Nannochloropsis oceanica|type=CDS|length=3384bp|location=Sequence derived from alignment at scaffold_42:31007..32746+ (Nannochloropsis oceanica)
ATGCCCTCGTTTTTCGTGGCCGGCAGCAAGCAATTGCAGCACCGAGGCGT
GAGAAGACAAACTATGTCGTCCCCACCCGCTGGCACTATAAAGCGGGACT
ATGTGAGAGAAAACCGCAAAGCGATCCGAGAGCTGGAAGACGACGTGCGG
AGCCAACGTGCGTTTACGGACGAGATTATGCGAATGGATGAAGTCAAAAC
AAAATGGAAGATGAACAGGTTCCAGGACATCGAGAGCAAGATGACAGCGA
TCATGAATAAATCCGGCGACCGTCTCCAGTCGCCTTCATCCGGCTCACCG
GTATCTACCACCGCTACGGCTGCATTCACGTCCCCGGCAGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAGCAAGTCACTCCTCGATCATCCACCCAGCTC
CTCCCTCAACCCCTTTCCTTCAGCGTGGCACCCTCGAACAACGCATTCTC
GACCAAAGCACTAAGGTACGAGAAAAAATTAGGACACATCATGCCTCTGC
CCTCTTCCTCTCCTCTCCCACCGCAGCTGAGGCAGCAAAAGCAGCTTCCC
TCTCTCATCTGGAACGCAAGCCCGCCGTGCCTCGCGCTCGCGACTTCGTG
CCCTTGCTCCGTCCCGCGGTTTCCAAAAACCACATCATCAATAATCGACG
AGCGGCTATAAAGCTTTCTTCTTCCTCTTCTTCTTCTTGTTCTTTTCCTT
CTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCGTCCTCCTCCCCTTCTCCC
TGCTCCTCCAACAGCAGCAGTAATACGAGCACCGGTGGATGCGCCCGTCA
CAAAGCCTTCGGGCGTATTCCTTCCTATCTCCTTGCAATCAAGCAAGCTC
GCCTTGCCGCCGAGGCGCTCAGACGGGCGGCCATGAAAGGTCGACATTCT
GATATCCCTCCAGGGATGCGACTCCTGACTGATGCAGAACGAAGCGAAGC
CCTTGCTGCCTTGGATGCGCAAGAACGGGAAATACAATCGATGTTGCTCA
AGATCCCCTTGAGAGTGGACACACCAAGTATGGCTCGAAAGAAGCATGCT
TTAGAGGCACGCTTGACGGAGGTGGGGACGAGTCGGGAGCTCTTTGCCAA
GCCTCGGGTGTTGATTAAAGACGGATGAATGCCCTCGTTTTTCGTGGCCG
GCAGCAAGCAATTGCAGCACCGAGGCGTGAGAAGACAAACTATGTCGTCC
CCACCCGCTGGCACTATAAAGCGGGACTATGTGAGAGAAAACCGCAAAGC
GATCCGAGAGCTGGAAGACGACGTGCGGAGCCAACGTGCGTTTACGGACG
AGATTATGCGAATGGATGAAGTCAAAACAAAATGGAAGATGAACAGGTTC
CAGGACATCGAGAGCAAGATGACAGCGATCATGAATAAATCCGGCGACCG
TCTCCAGTCGCCTTCATCCGGCTCACCGGTATCTACCACCGCTACGGCTG
CATTCACGTCCCCGGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCA
AGTCACTCCTCGATCATCCACCCAGCTCCTCCCTCAACCCCTTTCCTTCA
GCGTGGCACCCTCGAACAACGCATTCTCGACCAAAGCACTAAGGTACGAG
AAAAAATTAGGACACATCATGCCTCTGCCCTCTTCCTCTCCTCTCCCACC
GCAGCTGAGGCAGCAAAAGCAGCTTCCCTCTCTCATCTGGAACGCAAGCC
CGCCGTGCCTCGCGCTCGCGACTTCGTGCCCTTGCTCCGTCCCGCGGTTT
CCAAAAACCACATCATCAATAATCGACGAGCGGCTATAAAGCTTTCTTCT
TCCTCTTCTTCTTCTTGTTCTTTTCCTTCTTCTTCTTCTTCTTCCTCCTC
CTCCTCCTCGTCCTCCTCCCCTTCTCCCTGCTCCTCCAACAGCAGCAGTA
ATACGAGCACCGGTGGATGCGCCCGTCACAAAGCCTTCGGGCGTATTCCT
TCCTATCTCCTTGCAATCAAGCAAGCTCGCCTTGCCGCCGAGGCGCTCAG
ACGGGCGGCCATGAAAGGTCGACATTCTGATATCCCTCCAGGGATGCGAC
TCCTGACTGATGCAGAACGAAGCGAAGCCCTTGCTGCCTTGGATGCGCAA
GAACGGGAAATACAATCGATGTTGCTCAAGATCCCCTTGAGAGTGGACAC
ACCAAGTATGGCTCGAAAGAAGCATGCTTTAGAGGCACGCTTGACGGAGG
TGGGGACGAGTCGGGAGCTCTTTGCCAAGCCTCGGGTGTTGATTAAAGAC
GGATGAATGCCCTCGTTTTTCGTGGCCGGCAGCAAGCAATTGCAGCACCG
AGGCGTGAGAAGACAAACTATGTCGTCCCCACCCGCTGGCACTATAAAGC
GGGACTATGTGAGAGAAAACCGCAAAGCGATCCGAGAGCTGGAAGACGAC
GTGCGGAGCCAACGTGCGTTTACGGACGAGATTATGCGAATGGATGAAGT
CAAAACAAAATGGAAGATGAACAGGTTCCAGGACATCGAGAGCAAGATGA
CAGCGATCATGAATAAATCCGGCGACCGTCTCCAGTCGCCTTCATCCGGC
TCACCGGTATCTACCACCGCTACGGCTGCATTCACGTCCCCGGCAGCAGC
AACAACAGCAGCAGCAGCAGCAGCAGCAAGTCACTCCTCGATCATCCACC
CAGCTCCTCCCTCAACCCCTTTCCTTCAGCGTGGCACCCTCGAACAACGC
ATTCTCGACCAAAGCACTAAGGTACGAGAAAAAATTAGGACACATCATGC
CTCTGCCCTCTTCCTCTCCTCTCCCACCGCAGCTGAGGCAGCAAAAGCAG
CTTCCCTCTCTCATCTGGAACGCAAGCCCGCCGTGCCTCGCGCTCGCGAC
TTCGTGCCCTTGCTCCGTCCCGCGGTTTCCAAAAACCACATCATCAATAA
TCGACGAGCGGCTATAAAGCTTTCTTCTTCCTCTTCTTCTTCTTGTTCTT
TTCCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCGTCCTCCTCCCCT
TCTCCCTGCTCCTCCAACAGCAGCAGTAATACGAGCACCGGTGGATGCGC
CCGTCACAAAGCCTTCGGGCGTATTCCTTCCTATCTCCTTGCAATCAAGC
AAGCTCGCCTTGCCGCCGAGGCGCTCAGACGGGCGGCCATGAAAGGTCGA
CATTCTGATATCCCTCCAGGGATGCGACTCCTGACTGATGCAGAACGAAG
CGAAGCCCTTGCTGCCTTGGATGCGCAAGAACGGGAAATACAATCGATGT
TGCTCAAGATCCCCTTGAGAGTGGACACACCAAGTATGGCTCGAAAGAAG
CATGCTTTAGAGGCACGCTTGACGGAGGTGGGGACGAGTCGGGAGCTCTT
TGCCAAGCCTCGGGTGTTGATTAAAGACGGATGA

Synonyms

Publications