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Properties
| Property Name | Value |
|---|
| TranscriptId | 308426 |
| Track | FilteredModels2 |
| ProteinId | 308340 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:125267..126457 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10038 ID=mRNA_10038|Name=jgi.p|Nanoce1779_2|308340|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
CGAGGTAAATCTTAATGAAGATGTGGACGATCACGTCTTAGTAAGTCATT
TTCACCGTGTATCTCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCCCTCTC
TCTCCCCCTCTCTCCGTCCCTCCCTCCCTCCCTCTCTAGATGCCCACGGG
CTTGCTGGACGTGGGGGAGGACATTGGCACCGGCGCCGAACGTGAGGTGA
AGGAGGAGACGGGGGTAGACGCGCGGTTTCGGAGCCTGGTGGCCTTTCGG
CATGCTCACGGCTTTGCCTTTGGTAAGAGTGACTTGTTCTTTGTGGCACG
CCTCGAAGTGGAGGAGGGGAGCAGCATTCAACCCTGTCCGCGTGAGATCG
CGGTCTGTGAGTGGGTGCCTCTGTCCCTGTTCCTCTCCCAGCCCCGCTTT
CTCTCCTCTCCCCTCTACGCTTGTGTCTATGATCTATGCCAGGACGTGTT
GGAGGAGGGCGGGAGGGAGGGCGAGAGGGAGGGCGGGGCCCTGACGGCGA
TTGTGGGGACGCGTCTGGAGATGGGGTTTAAGCCGGGGGCGGCCTGGTTG
TATCACACATCACAATGGCACCATGAGAAGCATGGAAAAGGAGGAGGGGG
CGGGAAGGTTGGGAATGGAAGCAACGGAATAAAGGATGAGGGTGTGATGG
CTAGGGTCCGTGAACCGGTGGAAGGCGGGGCGGGTGGATTTTAAGAGAAC
GATTTACATTGAAGATATAAAAGTAGCTATGTAT back to topprotein sequence of jgi.p|Nanoce1779_2|308340 >mRNA_10038-protein ID=mRNA_10038-protein|Name=jgi.p|Nanoce1779_2|308340|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MPTGLLDVGEDIGTGAEREVKEETGVDARFRSLVAFRHAHGFAFGKSDLF
FVARLEVEEGSSIQPCPREIAVCEWVPLSLFLSQPRFLSSPLYACVYDLC
QDVLEEGGREGEREGGALTAIVGTRLEMGFKPGAAWLYHTSQWHHEKHGK
GGGGGKVGNGSNGIKDEGVMARVREPVEGGAGGF* back to topmRNA from alignment at scaffold_42:125267..126457+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10038 ID=mRNA_10038|Name=jgi.p|Nanoce1779_2|308340|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_42:125267..126457+ (Nannochloropsis oceanica)
CGAGGTAAATCTTAATGAAGATGTGGACGATCACGTCTTAGTAAGTCATT
TTCACCGTGTATCTCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCCCTCTC
TCTCCCCCTCTCTCCGTCCCTCCCTCCCTCCCTCTCTAGATGCCCACGGG
CTTGCTGGACGTGGGGGAGGACATTGGCACCGGCGCCGAACGTGAGGTGG
GAAGCAGACGCCTTCCCTTCTTCCCTCTCTTTCTCCCTCCCTCTTTAGCT
ACCTCCATGCTTTCCGTCTCCCTCTACGGTTACAGCTCTCTCCCTTCCTT
CCTCCCTCCCTCCCGTGTCTTCTCCATGCCTTCACCTTTCTCTCTTACTT
TGGATGAAGACAATTTAAAAAAACTTCTCTTTTCGCCTCATCAATTCGTC
TTCCCTTCTCTTCCTCTTTCCTTTCCATTTCCATCCTAAAGGTGAAGGAG
GAGACGGGGGTAGACGCGCGGTTTCGGAGCCTGGTGGCCTTTCGGCATGC
TCACGGCTTTGCCTTTGGTAAGAGTGACTTGTTCTTTGTGGCACGCCTCG
AAGTGGAGGAGGGGAGCAGGTAGGTAGGAAGGGAGGGAGGGAGGGAAGGA
GGGAGGGAGGGAGGGAGGACAGGCTTACCCCTCGGTCAATTTGATATTTA
TTCTTTGTGGTCTCGCGGCGATTGTCTGTGTAGGTAAAGAGGGAAGGTAT
CATAATGAATTTTTATTTATTATATCCCTGTTATTTATTATATCTATCCC
TCTCTCCACCCCTCATTCACTCCACCCGTAGCATTCAACCCTGTCCGCGT
GAGATCGCGGTCTGTGAGTGGGTGCCTCTGTCCCTGTTCCTCTCCCAGCC
CCGCTTTCTCTCCTCTCCCCTCTACGCTTGTGTCTATGATCTATGCCAGG
ACGTGTTGGAGGAGGGCGGGAGGGAGGGCGAGAGGGAGGGCGGGGCCCTG
ACGGCGATTGTGGGGACGCGTCTGGAGATGGGGTTTAAGCCGGGGGCGGC
CTGGTTGTATCACACATCACAATGGCACCATGAGAAGCATGGAAAAGGAG
GAGGGGGCGGGAAGGTTGGGAATGGAAGCAACGGAATAAAGGATGAGGGT
GTGATGGCTAGGGTCCGTGAACCGGTGGAAGGCGGGGCGGGTGGATTTTA
AGAGAACGATTTACATTGAAGATATAAAAGTAGCTATGTAT back to topCoding sequence (CDS) from alignment at scaffold_42:125267..126457+ >mRNA_10038 ID=mRNA_10038|Name=jgi.p|Nanoce1779_2|308340|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_42:125267..126457+ (Nannochloropsis oceanica)
ATGCCCACGGGCTTGCTGGACGTGGGGGAGGACATTGGCACCGGCGCCGA
ACGTGAGGTGAAGGAGGAGACGGGGGTAGACGCGCGGTTTCGGAGCCTGG
TGGCCTTTCGGCATGCTCACGGCTTTGCCTTTGGTAAGAGTGACTTGTTC
TTTGTGGCACGCCTCGAAGTGGAGGAGGGGAGCAGCATTCAACCCTGTCC
GCGTGAGATCGCGGTCTGTGAGTGGGTGCCTCTGTCCCTGTTCCTCTCCC
AGCCCCGCTTTCTCTCCTCTCCCCTCTACGCTTGTGTCTATGATCTATGC
CAGGACGTGTTGGAGGAGGGCGGGAGGGAGGGCGAGAGGGAGGGCGGGGC
CCTGACGGCGATTGTGGGGACGCGTCTGGAGATGGGGTTTAAGCCGGGGG
CGGCCTGGTTGTATCACACATCACAATGGCACCATGAGAAGCATGGAAAA
GGAGGAGGGGGCGGGAAGGTTGGGAATGGAAGCAACGGAATAAAGGATGA
GGGTGTGATGGCTAGGGTCCGTGAACCGGTGGAAGGCGGGGCGGGTGGAT
TTTAAATGCCCACGGGCTTGCTGGACGTGGGGGAGGACATTGGCACCGGC
GCCGAACGTGAGGTGAAGGAGGAGACGGGGGTAGACGCGCGGTTTCGGAG
CCTGGTGGCCTTTCGGCATGCTCACGGCTTTGCCTTTGGTAAGAGTGACT
TGTTCTTTGTGGCACGCCTCGAAGTGGAGGAGGGGAGCAGCATTCAACCC
TGTCCGCGTGAGATCGCGGTCTGTGAGTGGGTGCCTCTGTCCCTGTTCCT
CTCCCAGCCCCGCTTTCTCTCCTCTCCCCTCTACGCTTGTGTCTATGATC
TATGCCAGGACGTGTTGGAGGAGGGCGGGAGGGAGGGCGAGAGGGAGGGC
GGGGCCCTGACGGCGATTGTGGGGACGCGTCTGGAGATGGGGTTTAAGCC
GGGGGCGGCCTGGTTGTATCACACATCACAATGGCACCATGAGAAGCATG
GAAAAGGAGGAGGGGGCGGGAAGGTTGGGAATGGAAGCAACGGAATAAAG
GATGAGGGTGTGATGGCTAGGGTCCGTGAACCGGTGGAAGGCGGGGCGGG
TGGATTTTAAATGCCCACGGGCTTGCTGGACGTGGGGGAGGACATTGGCA
CCGGCGCCGAACGTGAGGTGAAGGAGGAGACGGGGGTAGACGCGCGGTTT
CGGAGCCTGGTGGCCTTTCGGCATGCTCACGGCTTTGCCTTTGGTAAGAG
TGACTTGTTCTTTGTGGCACGCCTCGAAGTGGAGGAGGGGAGCAGCATTC
AACCCTGTCCGCGTGAGATCGCGGTCTGTGAGTGGGTGCCTCTGTCCCTG
TTCCTCTCCCAGCCCCGCTTTCTCTCCTCTCCCCTCTACGCTTGTGTCTA
TGATCTATGCCAGGACGTGTTGGAGGAGGGCGGGAGGGAGGGCGAGAGGG
AGGGCGGGGCCCTGACGGCGATTGTGGGGACGCGTCTGGAGATGGGGTTT
AAGCCGGGGGCGGCCTGGTTGTATCACACATCACAATGGCACCATGAGAA
GCATGGAAAAGGAGGAGGGGGCGGGAAGGTTGGGAATGGAAGCAACGGAA
TAAAGGATGAGGGTGTGATGGCTAGGGTCCGTGAACCGGTGGAAGGCGGG
GCGGGTGGATTTTAA back to top
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