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Properties
Property Name | Value |
TranscriptId | 315425 |
Track | FilteredModels2 |
ProteinId | 315339 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_45 | supercontig | scaffold_45:118375..121363 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9877 ID=mRNA_9877|Name=jgi.p|Nanoce1779_2|315339|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp GGTCGACCTCCTGCCTCTATCGCTTCGACCTCCGTCGTCAGTGGTAGCCA AGCCAATCCAATGACCCCAAAAGGTACAATATGCGGGTATTCAAAAGCGA AGGCCCCTGATACTCACACAAACACACCTTGTAGGCTAGAATGAGGTGTA GCTGGAAAATGCACCGTGTTTGGAGTAACCATTGCTTGCTGCCTGCATGC TTTTCTCCTCCATTTTCATGAGGGGCTTCCCAATGGGGTGTTCGCCAGAA CGCGACGCCGTTTGAATGACATCACCTTCCGTGTTGTGTGTCTTATCTCT GTCCGTCCCTACCACTCACACTTAGTCATGTCGAACAACCACAACATCGT GTACGAACAGGTCCAAACAATGCCGATAGTGCCGTCCTCCTCTTCCTCGT CCTCGTCCTCCTTCTCCTCGTCCTCCACGCTTAGCCGGCCTTCCCCAGTC AATGCCAGCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCACTAATAGCAA CCTCGACGCCGCCTTCTCATCCTTAGGCATAAAGGCCCCCCCTTCTGACG TGCTCCAGCGGGCAGTGGCCCTGTTGCGGGACAAAGGCAACGAAGCCTTC CGCCGCAAAAGGTTTTTGGAAGCTATCGATTTCTATGGGCAAGCCCTCGC GGGAGCACCGGACGACAAGACGCTCTATGCCAATCGCTGCCTGGCCCGGC TCAAGAAGGAGGAAGGAAAGGAGGGCGTGAAGGAGGGCGGGAGCGGGGGA AAAGAAAATTCGAAGGAAGGAGGGACGGAGGAGCTATTGTTGGCACTGGC CGATGCAGAGAGGGCATTGCAGCTGGATCCTAGCTGGCTGAAAGGATGTC ACCGCAAGGCTGTCTGTCTCTACAGACTCGGAAAGTGGAAGGACGCCAAG CCGTACCTTGTCAGGCTGCTCTCGGACCTGCCTGACGACAGGGAGTGTCA AGCCATGCTTAAAACCGTCCTCGAGAAGCTCACACCCACCACCACCGGCA GCAGCAACAACAAAAGCGGCAGAAGTGGCGGGTCCCAGATCCTCTCCCCC TTCCTCCTCCCCCCTCCTCCCCTGTCCTTCCTCGGGAGGAGGAGACGGAG CCGTTGAAGAGGTCAGGGTAAGACCTGGCATAAGAGAGAAGCAGAGGGCC TTCTTAATGCTAGGCTCTTTTGCCGGAATAGCGCCACTTCAATTGTACAC GCAAGGTAAGGAGGGAGGGAGGGAGGATGGAAAGGAGATGTGTGTGTTTG TGCCTGTCTGTCTTATTGTGTGAGTATCTATGTGTGAGTGCGTGTCATCT C back to topprotein sequence of jgi.p|Nanoce1779_2|315339 >mRNA_9877-protein ID=mRNA_9877-protein|Name=jgi.p|Nanoce1779_2|315339|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp MSNNHNIVYEQVQTMPIVPSSSSSSSSSFSSSSTLSRPSPVNASSNGSSS SSSSTNSNLDAAFSSLGIKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAI DFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGSGGKENSKEGGT EELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSD LPDDRECQAMLKTVLEKLTPTTTGSSNNKSGRSGGSQILSPFLLPPPPLS FLGRRRRSR* back to topmRNA from alignment at scaffold_45:118375..121363+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9877 ID=mRNA_9877|Name=jgi.p|Nanoce1779_2|315339|organism=Nannochloropsis oceanica|type=mRNA|length=2989bp|location=Sequence derived from alignment at scaffold_45:118375..121363+ (Nannochloropsis oceanica) GGTCGACCTCCTGCCTCTATCGCTTCGACCTCCGTCGTCAGTGGTAGCCA
AGCCAATCCAATGACCCCAAAAGGTACAATATGCGGGTATTCAAAAGCGA
AGGCCCCTGATACTCACACAAACACACCTTGTAGGCTAGAATGAGGTGTA
GCTGGAAAATGCACCGTGTTTGGAGTAACCATTGCTTGCTGCCTGCATGC
TTTTCTCCTCCATTTTCATGAGGGGCTTCCCAATGGGGTGTTCGCCAGAA
CGCGACGCCGTTTGAATGACATCACCTTCCGTGTTGTGTGTCTTATCTCT
GTCCGTCCCTACCACTCACACTTAGTCATGTCGAACAACCACAACATCGT
GTACGAACAGGTCCAAACAATGCCGATAGTGCCGTCCTCCTCTTCCTCGT
CCTCGTCCTCCTTCTCCTCGTCCTCCACGCTTAGCCGGCCTTCCCCAGTC
AATGCCAGCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCACTAATAGCAA
CCTCGACGCCGCCTTCTCATCCTTAGGCATAAAGGTACACTCAATTCTAC
CTTTCTTTTATGTCTCGCTCGTCCCTAGGCTGGGAGAAGCACTTTCTTTA
TATGCATACTCACGCGTAGTCGCAAGCTTGCATGTCCCCTGCCCTCCTTC
CCCTAGCTATCTGCCTCACTCCGTCCATGTTTTTCCACGTCAATTTAGCA
AGCAATGGCTGTCTCACGGCACAACAATCACGTGGCTCTTCACCACTTTT
TGGCCCACACCTCAAACCCCCTCTTCCCCTTTCTCCTCTCCCTTTCAACC
TTCCTCCCCCCCCGTCAGGCCCCCCCTTCTGACGTGCTCCAGCGGGCAGT
GGCCCTGTTGCGGGACAAAGGCAACGAAGCCTTCCGCCGCAAAAGGTTTT
TGGAAGCTATCGGTAAGAAAAGGAAGAGAAAAAGCGACGAAACAAAGGCC
GGGTGTGAGGGAAGGAGAGGGCAGACGAGGACCGCCACTAGGTCAAGACC
TGTGTAAGGCGATTATGACGACCCTTCATACATACATATACATACATATT
TTAAATACTACTTACCCCTCCTCAATACCATGGCTCCCTCCCTCGATTCA
TCCCTAGATTTCTATGGGCAAGCCCTCGCGGGAGCACCGGACGACAAGAC
GCTCTATGCCAATCGCTGCCTGGCCCGGCTCAAGAAGGAGGAAGGAAAGG
AGGGCGTGAAGGAGGGCGGGAGCGGGGGAAAAGAAAATTCGAAGGAAGGA
GGGACGGAGGAGCTATTGTTGGCACTGGCCGATGCAGAGAGGGCATTGCA
GGTGAGGTGGAAAGAAGGAAGGGAGTTAGGGGTATATCTACAATCATTTC
ATCGTCGACTTACCTCTCCCTTCCTCCCTCCCTCCATCCATCCATCCCTA
CCTAGCTGGATCCTAGCTGGCTGAAAGGATGTCACCGCAAGGCTGTCTGT
CTCTACAGACTCGGAAAGTGGAAGGACGCCAAGCCGTACCTTGTCAGGTG
GGGTGGGAGGGAGGGGGGGGAGGGAGGGAGGGAGGGGCGGGAGGCTGCCT
GCGAGGGAGGGAAGGAGGGAGGAAAGAAGGGAGGAGGCGCTGCATTCAGT
CACGGCACCATGTGCACAACTGAGATCATCATTCACCTGATGTTTGATAT
TTCTCGTGTCCTCCCTCCCCCCCCCTTCAGGCTGCTCTCGGACCTGCCTG
ACGACAGGGAGTGTCAAGCCATGCTTAAAACCGTCCTCGAGAAGCTGTAC
GTGCCCTCCCTCCCTCCCTCCCTCCTTCACTTCCTTCCTGCATCTCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCATTTGCTGTCGTCTTTCCTT
CTCTATTCTTGCCTTTTCCGCTTAGACACGCCCTACCTCCCTCCCTCCCC
CCCCCACTCGCTCCCTCCCTTCCTCCCAGCACACCCACCACCACCGGCAG
CAGCAACAACAAAAGCGGCAGAAGTGGCGGGTCCCAGATCCAGAAGGGAG
AGGGGGAGGACGGGAAGGAGGAAGGGGCGGAGGAAGAGACGACCGTTGTC
TTGTCCCGGAAAGTGTTTTATCCCTCGCAGGTAGGGAGGGAGGGAGAGAG
GGGAGGGAGGAAAGGGAAGAGAGAAATGGGAGGGAAGGAGGAGGGGAGGG
CGAGAAGGGAGTAGCTGAAGGGAGGGGGGGGAGGAGGGAGGGAAGGGAAG
GAGAGAAGGAGGGAGGGTAGAAGGTGAAGATTATAACATATTTGCGTCCG
TAAACACTGACCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCT
TCCTCTGCCAGGAGTGGTATACGCGGAATCTGATTGCTCCCGTGCTGGTG
AGTCAGCTGAAGGCTTACTCGGAGATGGACGCCCCCCGGCGACTGATCGA
GGTAGGGAGGGAGGGAGGCAAGGAGGGAGGGAGCGAGGGGGGGAGGGGTG
ATGACCTTTTATCGCTTTTATTTTCCATCCGTCCTTCTCATGCTCCCTCC
GTCCCGCCCTCCCTCCCTCCCTGAATTCTTCCATCCTCCATCCTCTTCTC
TGTCCCTCCTTCCATCTTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCAGACCCTTTCCGATTCCCTCCTGATAAAAAAATGGCGT
ACCTTCCTCTCCTCCTTCCCTTCCTCCTCCTCTCCCCCTTCCTCCTCCCC
CCTCCTCCCCTGTCCTTCCTCGGGAGGAGGAGACGGAGCCGTTGAAGAGG
TCAGGGTAAGACCTGGCATAAGAGAGAAGCAGAGGGCCTTCTTAATGCTA
GGCTCTTTTGCCGGAATAGCGCCACTTCAATTGTACACGCAAGGTAAGGA
GGGAGGGAGGGAGGATGGAAAGGAGATGTGTGTGTTTGTGCCTGTCTGTC
TTATTGTGTGAGTATCTATGTGTGAGTGCGTGTCATCTC back to topCoding sequence (CDS) from alignment at scaffold_45:118375..121363+ >mRNA_9877 ID=mRNA_9877|Name=jgi.p|Nanoce1779_2|315339|organism=Nannochloropsis oceanica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_45:118375..121363+ (Nannochloropsis oceanica) ATGTCGAACAACCACAACATCGTGTACGAACAGGTCCAAACAATGCCGAT AGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTCGTCCTCCA CGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGGCAGCAGCAGC AGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCTCATCCTTAGG CATAAAGGCCCCCCCTTCTGACGTGCTCCAGCGGGCAGTGGCCCTGTTGC GGGACAAAGGCAACGAAGCCTTCCGCCGCAAAAGGTTTTTGGAAGCTATC GATTTCTATGGGCAAGCCCTCGCGGGAGCACCGGACGACAAGACGCTCTA TGCCAATCGCTGCCTGGCCCGGCTCAAGAAGGAGGAAGGAAAGGAGGGCG TGAAGGAGGGCGGGAGCGGGGGAAAAGAAAATTCGAAGGAAGGAGGGACG GAGGAGCTATTGTTGGCACTGGCCGATGCAGAGAGGGCATTGCAGCTGGA TCCTAGCTGGCTGAAAGGATGTCACCGCAAGGCTGTCTGTCTCTACAGAC TCGGAAAGTGGAAGGACGCCAAGCCGTACCTTGTCAGGCTGCTCTCGGAC CTGCCTGACGACAGGGAGTGTCAAGCCATGCTTAAAACCGTCCTCGAGAA GCTCACACCCACCACCACCGGCAGCAGCAACAACAAAAGCGGCAGAAGTG GCGGGTCCCAGATCCTCTCCCCCTTCCTCCTCCCCCCTCCTCCCCTGTCC TTCCTCGGGAGGAGGAGACGGAGCCGTTGAATGTCGAACAACCACAACAT CGTGTACGAACAGGTCCAAACAATGCCGATAGTGCCGTCCTCCTCTTCCT CGTCCTCGTCCTCCTTCTCCTCGTCCTCCACGCTTAGCCGGCCTTCCCCA GTCAATGCCAGCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCACTAATAG CAACCTCGACGCCGCCTTCTCATCCTTAGGCATAAAGGCCCCCCCTTCTG ACGTGCTCCAGCGGGCAGTGGCCCTGTTGCGGGACAAAGGCAACGAAGCC TTCCGCCGCAAAAGGTTTTTGGAAGCTATCGATTTCTATGGGCAAGCCCT CGCGGGAGCACCGGACGACAAGACGCTCTATGCCAATCGCTGCCTGGCCC GGCTCAAGAAGGAGGAAGGAAAGGAGGGCGTGAAGGAGGGCGGGAGCGGG GGAAAAGAAAATTCGAAGGAAGGAGGGACGGAGGAGCTATTGTTGGCACT GGCCGATGCAGAGAGGGCATTGCAGCTGGATCCTAGCTGGCTGAAAGGAT GTCACCGCAAGGCTGTCTGTCTCTACAGACTCGGAAAGTGGAAGGACGCC AAGCCGTACCTTGTCAGGCTGCTCTCGGACCTGCCTGACGACAGGGAGTG TCAAGCCATGCTTAAAACCGTCCTCGAGAAGCTCACACCCACCACCACCG GCAGCAGCAACAACAAAAGCGGCAGAAGTGGCGGGTCCCAGATCCTCTCC CCCTTCCTCCTCCCCCCTCCTCCCCTGTCCTTCCTCGGGAGGAGGAGACG GAGCCGTTGAATGTCGAACAACCACAACATCGTGTACGAACAGGTCCAAA CAATGCCGATAGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCC TCGTCCTCCACGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGG CAGCAGCAGCAGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCT CATCCTTAGGCATAAAGGCCCCCCCTTCTGACGTGCTCCAGCGGGCAGTG GCCCTGTTGCGGGACAAAGGCAACGAAGCCTTCCGCCGCAAAAGGTTTTT GGAAGCTATCGATTTCTATGGGCAAGCCCTCGCGGGAGCACCGGACGACA AGACGCTCTATGCCAATCGCTGCCTGGCCCGGCTCAAGAAGGAGGAAGGA AAGGAGGGCGTGAAGGAGGGCGGGAGCGGGGGAAAAGAAAATTCGAAGGA AGGAGGGACGGAGGAGCTATTGTTGGCACTGGCCGATGCAGAGAGGGCAT TGCAGCTGGATCCTAGCTGGCTGAAAGGATGTCACCGCAAGGCTGTCTGT CTCTACAGACTCGGAAAGTGGAAGGACGCCAAGCCGTACCTTGTCAGGCT GCTCTCGGACCTGCCTGACGACAGGGAGTGTCAAGCCATGCTTAAAACCG TCCTCGAGAAGCTCACACCCACCACCACCGGCAGCAGCAACAACAAAAGC GGCAGAAGTGGCGGGTCCCAGATCCTCTCCCCCTTCCTCCTCCCCCCTCC TCCCCTGTCCTTCCTCGGGAGGAGGAGACGGAGCCGTTGAATGTCGAACA ACCACAACATCGTGTACGAACAGGTCCAAACAATGCCGATAGTGCCGTCC TCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTCGTCCTCCACGCTTAGCCG GCCTTCCCCAGTCAATGCCAGCAGCAACGGCAGCAGCAGCAGCAGCAGCA GCACTAATAGCAACCTCGACGCCGCCTTCTCATCCTTAGGCATAAAGGCC CCCCCTTCTGACGTGCTCCAGCGGGCAGTGGCCCTGTTGCGGGACAAAGG CAACGAAGCCTTCCGCCGCAAAAGGTTTTTGGAAGCTATCGATTTCTATG GGCAAGCCCTCGCGGGAGCACCGGACGACAAGACGCTCTATGCCAATCGC TGCCTGGCCCGGCTCAAGAAGGAGGAAGGAAAGGAGGGCGTGAAGGAGGG CGGGAGCGGGGGAAAAGAAAATTCGAAGGAAGGAGGGACGGAGGAGCTAT TGTTGGCACTGGCCGATGCAGAGAGGGCATTGCAGCTGGATCCTAGCTGG CTGAAAGGATGTCACCGCAAGGCTGTCTGTCTCTACAGACTCGGAAAGTG GAAGGACGCCAAGCCGTACCTTGTCAGGCTGCTCTCGGACCTGCCTGACG ACAGGGAGTGTCAAGCCATGCTTAAAACCGTCCTCGAGAAGCTCACACCC ACCACCACCGGCAGCAGCAACAACAAAAGCGGCAGAAGTGGCGGGTCCCA GATCCTCTCCCCCTTCCTCCTCCCCCCTCCTCCCCTGTCCTTCCTCGGGA GGAGGAGACGGAGCCGTTGAATGTCGAACAACCACAACATCGTGTACGAA CAGGTCCAAACAATGCCGATAGTGCCGTCCTCCTCTTCCTCGTCCTCGTC CTCCTTCTCCTCGTCCTCCACGCTTAGCCGGCCTTCCCCAGTCAATGCCA GCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCACTAATAGCAACCTCGAC GCCGCCTTCTCATCCTTAGGCATAAAGGCCCCCCCTTCTGACGTGCTCCA GCGGGCAGTGGCCCTGTTGCGGGACAAAGGCAACGAAGCCTTCCGCCGCA AAAGGTTTTTGGAAGCTATCGATTTCTATGGGCAAGCCCTCGCGGGAGCA CCGGACGACAAGACGCTCTATGCCAATCGCTGCCTGGCCCGGCTCAAGAA GGAGGAAGGAAAGGAGGGCGTGAAGGAGGGCGGGAGCGGGGGAAAAGAAA ATTCGAAGGAAGGAGGGACGGAGGAGCTATTGTTGGCACTGGCCGATGCA GAGAGGGCATTGCAGCTGGATCCTAGCTGGCTGAAAGGATGTCACCGCAA GGCTGTCTGTCTCTACAGACTCGGAAAGTGGAAGGACGCCAAGCCGTACC TTGTCAGGCTGCTCTCGGACCTGCCTGACGACAGGGAGTGTCAAGCCATG CTTAAAACCGTCCTCGAGAAGCTCACACCCACCACCACCGGCAGCAGCAA CAACAAAAGCGGCAGAAGTGGCGGGTCCCAGATCCTCTCCCCCTTCCTCC TCCCCCCTCCTCCCCTGTCCTTCCTCGGGAGGAGGAGACGGAGCCGTTGA ATGTCGAACAACCACAACATCGTGTACGAACAGGTCCAAACAATGCCGAT AGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTCGTCCTCCA CGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGGCAGCAGCAGC AGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCTCATCCTTAGG CATAAAGGCCCCCCCTTCTGACGTGCTCCAGCGGGCAGTGGCCCTGTTGC GGGACAAAGGCAACGAAGCCTTCCGCCGCAAAAGGTTTTTGGAAGCTATC GATTTCTATGGGCAAGCCCTCGCGGGAGCACCGGACGACAAGACGCTCTA TGCCAATCGCTGCCTGGCCCGGCTCAAGAAGGAGGAAGGAAAGGAGGGCG TGAAGGAGGGCGGGAGCGGGGGAAAAGAAAATTCGAAGGAAGGAGGGACG GAGGAGCTATTGTTGGCACTGGCCGATGCAGAGAGGGCATTGCAGCTGGA TCCTAGCTGGCTGAAAGGATGTCACCGCAAGGCTGTCTGTCTCTACAGAC TCGGAAAGTGGAAGGACGCCAAGCCGTACCTTGTCAGGCTGCTCTCGGAC CTGCCTGACGACAGGGAGTGTCAAGCCATGCTTAAAACCGTCCTCGAGAA GCTCACACCCACCACCACCGGCAGCAGCAACAACAAAAGCGGCAGAAGTG GCGGGTCCCAGATCCTCTCCCCCTTCCTCCTCCCCCCTCCTCCCCTGTCC TTCCTCGGGAGGAGGAGACGGAGCCGTTGAATGTCGAACAACCACAACAT CGTGTACGAACAGGTCCAAACAATGCCGATAGTGCCGTCCTCCTCTTCCT CGTCCTCGTCCTCCTTCTCCTCGTCCTCCACGCTTAGCCGGCCTTCCCCA GTCAATGCCAGCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCACTAATAG CAACCTCGACGCCGCCTTCTCATCCTTAGGCATAAAGGCCCCCCCTTCTG ACGTGCTCCAGCGGGCAGTGGCCCTGTTGCGGGACAAAGGCAACGAAGCC TTCCGCCGCAAAAGGTTTTTGGAAGCTATCGATTTCTATGGGCAAGCCCT CGCGGGAGCACCGGACGACAAGACGCTCTATGCCAATCGCTGCCTGGCCC GGCTCAAGAAGGAGGAAGGAAAGGAGGGCGTGAAGGAGGGCGGGAGCGGG GGAAAAGAAAATTCGAAGGAAGGAGGGACGGAGGAGCTATTGTTGGCACT GGCCGATGCAGAGAGGGCATTGCAGCTGGATCCTAGCTGGCTGAAAGGAT GTCACCGCAAGGCTGTCTGTCTCTACAGACTCGGAAAGTGGAAGGACGCC AAGCCGTACCTTGTCAGGCTGCTCTCGGACCTGCCTGACGACAGGGAGTG TCAAGCCATGCTTAAAACCGTCCTCGAGAAGCTCACACCCACCACCACCG GCAGCAGCAACAACAAAAGCGGCAGAAGTGGCGGGTCCCAGATCCTCTCC CCCTTCCTCCTCCCCCCTCCTCCCCTGTCCTTCCTCGGGAGGAGGAGACG GAGCCGTTGA back to top
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