jgi.p|Nanoce1779_2|569517, mRNA_9537 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569517
Unique NamemRNA_9537
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1164
Alignment locationscaffold_44:41118..42912 -

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Properties
Property NameValue
TranscriptId569603
TrackFilteredModels2
ProteinId569517
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:41118..42912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569517gene_9537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569517mRNA_9537-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9537CDS_9537Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9537 ID=mRNA_9537|Name=jgi.p|Nanoce1779_2|569517|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGGAGTCCGCCAGGCGCACTCGAGACTTCGACAAGAACAAAGCCCAGCG
TTTACACGACTTGCTGGGTGACAAGGCAGGCGGCGGGAAAGACCGGTCCA
AGAAGGGCAGCCTCGACGCCCCTATTGTGGAGTTGGTGGGCCTCATCAAT
GGCCATCGTAACTACGTAACGACCAGCTCGTGCTCCGGTCGAATTGCTCT
CTTTCAGGATGTGGATGGCGTGGTCTGTCGCAAGGCCAGCGGGAACTGGT
TGTTGTCAAGCCATGCTCCCGTCACACTCCAAGCAGTACGAGGGGCACTG
GCTGGATGCGATGCACGGGGCCAGGCTAGTGGTTCGGTAACGCTGAAGCA
AGAGCCTTTGGTACTGCATATCGAATGTCGGGACTTGGTATCGGCAGAAA
GTCTACTAAAGTTAGGGGTGGCAAGCGGATTTCGCGAGTCCGGTATCAGC
CTGGGCAAGAAGCGTGTGCTGGTAGCGATTCGGACGGGGGCCAACTCATT
GGAGGCACCTCTACTGCTCCAGGGTATCGATATGATGACGGAAGATGGGC
TGGACGCTTTGGTGGCGCTTGCCAATCGCAAGTTTGGGCTCAATGCTAAA
CGCACGCAACGCTTTACTGAGACACTGGCAGTGGCCTTTGCGGAAGAGGA
TAAGATGGAGTCACAGGAGCAAGGCTTGGCGACGACCACAATGAAGGGCA
ACTGTCCCGAGAGTAGGAGTAGCAGCAGTATTCAAGCAGCTAAACATGCC
CTGGCAGAGGAAAGGCGAAAGCGTAGGGATGGCGTAAAAAAGATCAAGAA
GCACAAGAAAGAATGGCGGTGGGTCGAGCCCGAAATTGCCTCCTCTCCCT
CCCCAACAACCGTGAAAGCAGCAGACAAACAGCTTTTGCGACGGTGGGGA
CACTCACTGTGTGAAGTGGAGACAGGGGTGTACTGGATGTTTGGGGGTTG
GTGCGAGAAACCGGCGGGGCGACAAAACGATCTCATTGAGATAAAGGTGC
AGAGGGGGGAGGAAAAGGAAAAAGTGAAGGAGCAGGGGGAGAAGAAGGAG
AAGGAGGAGGAAAAAGAGGAGAAAAATGTGAAGGAGAAGAAGAGGGGGAA
AAGGAAGAAGCAAGAGGAGGAAGAGGAGGAGGAGAAGAAGAAAATGATGA
TGAAGAAGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|569517

>mRNA_9537-protein ID=mRNA_9537-protein|Name=jgi.p|Nanoce1779_2|569517|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MESARRTRDFDKNKAQRLHDLLGDKAGGGKDRSKKGSLDAPIVELVGLIN
GHRNYVTTSSCSGRIALFQDVDGVVCRKASGNWLLSSHAPVTLQAVRGAL
AGCDARGQASGSVTLKQEPLVLHIECRDLVSAESLLKLGVASGFRESGIS
LGKKRVLVAIRTGANSLEAPLLLQGIDMMTEDGLDALVALANRKFGLNAK
RTQRFTETLAVAFAEEDKMESQEQGLATTTMKGNCPESRSSSSIQAAKHA
LAEERRKRRDGVKKIKKHKKEWRWVEPEIASSPSPTTVKAADKQLLRRWG
HSLCEVETGVYWMFGGWCEKPAGRQNDLIEIKVQRGEEKEKVKEQGEKKE
KEEEKEEKNVKEKKRGKRKKQEEEEEEEKKKMMMKKE*
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mRNA from alignment at scaffold_44:41118..42912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9537 ID=mRNA_9537|Name=jgi.p|Nanoce1779_2|569517|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_44:41118..42912- (Nannochloropsis oceanica)
ATGGAGTCCGCCAGGCGCACTCGAGACTTCGACAAGAACAAAGCCCAGCG
TTTACACGACTTGCTGGGTGACAAGGCAGGCGGCGGGAAAGACCGGTCCA
AGAAGGGCAGCCTCGACGCCCCTATTGTGGAGTTGGTGGGCCTCATCAAT
GGCCATCGTAACTACGTAACGACCAGCTCGTGCTCCGGTCGAATTGCTCT
CTTTCAGGATGTGGATGGCGTGGTCTGTCGCAAGGCCAGCGGGAACTGGT
TGTTGTCAAGCCATGCTCCCGTCACACTCCAAGCAGTACGAGGGGCACTG
GCTGGATGCGATGCACGGGGCCAGGCTAGTGGTTCGGTAACGCTGAAGCA
AGAGCCTTTGGTACTGCATATCGAATGTCGGGACTTGGTATCGGCAGAAA
GTCTACTAAAGTTAGGGGTGGCAAGCGGATTTCGCGAGTCCGGTATCAGC
CTGGGCAAGAAGCGTGTGCTGGTAGCGATTCGGACGGGGGCCAACTCATT
GGAGGCACCTCTACTGCTCCAGGGTATCGATATGATGACGGAAGATGGGC
TGGACGCTTTGGTGGCGCTTGCCAATCGCAAGTTTGGGCTCAATGCTAAA
CGCACGCAACGCTTTACTGAGACACTGGCAGTGGCCTTTGCGGAAGAGGA
TAAGATGGAGTCACAGGAGCAAGGCTTGGCGACGACCACAATGAAGGGCA
ACTGTCCCGAGAGTAGGAGTAGCAGCAGTATTCAAGCAGCTAAACATGCC
CTGGCAGAGGAAAGGCGAAAGCGTAGGGATGGCGTAAAAAAGATCAAGAA
GCACAAGAAAGAATGGCGGTGGGTCGAGCCCGAAATTGCCTCCTCTCCCT
CCCCAACAACCGTGAAAGCAGCAGACAAACAGCTTTTGCGACGGTGGGGA
CACTCACTGTGTGAAGTGGAGACAGGGGTGTACTGGATGTTTGGGGGTTG
GTGCGAGAAACCGGCGGGGCGACAAAACGATCTCATTGAGATAAAGGTGC
AGGTGGAGGCACCTAGCTTGACTTTATCCCTACAAGCCCTCAACAACCCC
TCCTCCCTCCCTAAACTCCATGAAAGCGCCACAACGACTGCTATGAATAC
CCCCGCAGCACGGGAGAAACACGCGGCCGTCGCCTTCCCCTCCTCCCACC
CCTCTCATTGCAAGGGCACCCTCGTTGTCTTCGGCGGTCGGGCCTCCCCC
CACCGGGCGTTCGGGGATCTATGGTTGTATCGACGAGAGGAGGGATGGAA
GGAGGTCATTCCATTGGGAACGGTACCTAGCCCAAGGTGGAGCCATAGCA
TGACATTGTTGAGGCATCGGAGTTGTATTGTTGTGTATGGAGGGAGGGAT
GGTCATAATGTTTTTGGGGGGAAGTTGCATATTCTCTCCCCTTTTGAGGA
TGGAATGTGGGCGTGGGGTGAAATGGTGTTGTCGAGGGCAGAGCCGGCAA
GGCCTTTGCCCCCGCTTTTTGCGCATACGGCCACAGTTGTGGGAGGAGAA
AGGGTGGGGGAGGAGGAGCGACGACTGTTTCTGTGGGGGGGGTTGGAGGA
TTTGAGTGGGGAGGGGGTTAAGGGGGAGGGGTTTTCGATTGATCTAGCGG
CACAGACTTACTGTTCTATTTCATGCACCAAAGAGGGGGGAGGAAAAGGA
AAAAGTGAAGGAGCAGGGGGAGAAGAAGGAGAAGGAGGAGGAAAAAGAGG
AGAAAAATGTGAAGGAGAAGAAGAGGGGGAAAAGGAAGAAGCAAGAGGAG
GAAGAGGAGGAGGAGAAGAAGAAAATGATGATGAAGAAGGAGTAG
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Coding sequence (CDS) from alignment at scaffold_44:41118..42912-

>mRNA_9537 ID=mRNA_9537|Name=jgi.p|Nanoce1779_2|569517|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_44:41118..42912- (Nannochloropsis oceanica)
AGGGGGGAGGAAAAGGAAAAAGTGAAGGAGCAGGGGGAGAAGAAGGAGAA
GGAGGAGGAAAAAGAGGAGAAAAATGTGAAGGAGAAGAAGAGGGGGAAAA
GGAAGAAGCAAGAGGAGGAAGAGGAGGAGGAGAAGAAGAAAATGATGATG
AAGAAGGAGTAGATGGAGTCCGCCAGGCGCACTCGAGACTTCGACAAGAA
CAAAGCCCAGCGTTTACACGACTTGCTGGGTGACAAGGCAGGCGGCGGGA
AAGACCGGTCCAAGAAGGGCAGCCTCGACGCCCCTATTGTGGAGTTGGTG
GGCCTCATCAATGGCCATCGTAACTACGTAACGACCAGCTCGTGCTCCGG
TCGAATTGCTCTCTTTCAGGATGTGGATGGCGTGGTCTGTCGCAAGGCCA
GCGGGAACTGGTTGTTGTCAAGCCATGCTCCCGTCACACTCCAAGCAGTA
CGAGGGGCACTGGCTGGATGCGATGCACGGGGCCAGGCTAGTGGTTCGGT
AACGCTGAAGCAAGAGCCTTTGGTACTGCATATCGAATGTCGGGACTTGG
TATCGGCAGAAAGTCTACTAAAGTTAGGGGTGGCAAGCGGATTTCGCGAG
TCCGGTATCAGCCTGGGCAAGAAGCGTGTGCTGGTAGCGATTCGGACGGG
GGCCAACTCATTGGAGGCACCTCTACTGCTCCAGGGTATCGATATGATGA
CGGAAGATGGGCTGGACGCTTTGGTGGCGCTTGCCAATCGCAAGTTTGGG
CTCAATGCTAAACGCACGCAACGCTTTACTGAGACACTGGCAGTGGCCTT
TGCGGAAGAGGATAAGATGGAGTCACAGGAGCAAGGCTTGGCGACGACCA
CAATGAAGGGCAACTGTCCCGAGAGTAGGAGTAGCAGCAGTATTCAAGCA
GCTAAACATGCCCTGGCAGAGGAAAGGCGAAAGCGTAGGGATGGCGTAAA
AAAGATCAAGAAGCACAAGAAAGAATGGCGGTGGGTCGAGCCCGAAATTG
CCTCCTCTCCCTCCCCAACAACCGTGAAAGCAGCAGACAAACAGCTTTTG
CGACGGTGGGGACACTCACTGTGTGAAGTGGAGACAGGGGTGTACTGGAT
GTTTGGGGGTTGGTGCGAGAAACCGGCGGGGCGACAAAACGATCTCATTG
AGATAAAGGTGCAGAGGGGGGAGGAAAAGGAAAAAGTGAAGGAGCAGGGG
GAGAAGAAGGAGAAGGAGGAGGAAAAAGAGGAGAAAAATGTGAAGGAGAA
GAAGAGGGGGAAAAGGAAGAAGCAAGAGGAGGAAGAGGAGGAGGAGAAGA
AGAAAATGATGATGAAGAAGGAGTAGATGGAGTCCGCCAGGCGCACTCGA
GACTTCGACAAGAACAAAGCCCAGCGTTTACACGACTTGCTGGGTGACAA
GGCAGGCGGCGGGAAAGACCGGTCCAAGAAGGGCAGCCTCGACGCCCCTA
TTGTGGAGTTGGTGGGCCTCATCAATGGCCATCGTAACTACGTAACGACC
AGCTCGTGCTCCGGTCGAATTGCTCTCTTTCAGGATGTGGATGGCGTGGT
CTGTCGCAAGGCCAGCGGGAACTGGTTGTTGTCAAGCCATGCTCCCGTCA
CACTCCAAGCAGTACGAGGGGCACTGGCTGGATGCGATGCACGGGGCCAG
GCTAGTGGTTCGGTAACGCTGAAGCAAGAGCCTTTGGTACTGCATATCGA
ATGTCGGGACTTGGTATCGGCAGAAAGTCTACTAAAGTTAGGGGTGGCAA
GCGGATTTCGCGAGTCCGGTATCAGCCTGGGCAAGAAGCGTGTGCTGGTA
GCGATTCGGACGGGGGCCAACTCATTGGAGGCACCTCTACTGCTCCAGGG
TATCGATATGATGACGGAAGATGGGCTGGACGCTTTGGTGGCGCTTGCCA
ATCGCAAGTTTGGGCTCAATGCTAAACGCACGCAACGCTTTACTGAGACA
CTGGCAGTGGCCTTTGCGGAAGAGGATAAGATGGAGTCACAGGAGCAAGG
CTTGGCGACGACCACAATGAAGGGCAACTGTCCCGAGAGTAGGAGTAGCA
GCAGTATTCAAGCAGCTAAACATGCCCTGGCAGAGGAAAGGCGAAAGCGT
AGGGATGGCGTAAAAAAGATCAAGAAGCACAAGAAAGAATGGCGGTGGGT
CGAGCCCGAAATTGCCTCCTCTCCCTCCCCAACAACCGTGAAAGCAGCAG
ACAAACAGCTTTTGCGACGGTGGGGACACTCACTGTGTGAAGTGGAGACA
GGGGTGTACTGGATGTTTGGGGGTTGGTGCGAGAAACCGGCGGGGCGACA
AAACGATCTCATTGAGATAAAGGTGCAG
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Synonyms
Publications