jgi.p|Nanoce1779_2|313990, mRNA_9844 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|313990
Unique NamemRNA_9844
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1505
Alignment locationscaffold_45:18108..19951 +

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Properties
Property NameValue
TranscriptId314076
TrackFilteredModels2
ProteinId313990
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:18108..19951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313990gene_9844Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|313990mRNA_9844-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9844CDS_9844Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9844 ID=mRNA_9844|Name=jgi.p|Nanoce1779_2|313990|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
ATCGCCGCCACGGATCCCCAACCCTAGCTCTCTCTCGCTCACACAATGCG
AAGTGCCAAGCCCCACTCTGTATCTATTTCTCGCTGCCCTTTGCCATGCA
CGCATGCACGCCTCTACTCCTCCATATTTCCAAAGAGATATGACCCCACC
TTAATATACTCTCTCTCTGTGCAAATTTTTCATTCCAAGCTGCTTCTGCA
AAGGCACTCGCACATAACAAAACCAACCCTCCCTTCCCGCCTCCTCCCTC
CTTCTTCCTCTCTCCCTCCTCCGTCCATCTCTAGGCTGTCCATGCCTTTG
AATGCTGTCATTCAGACATGTGGATACATAGCCATGGTCTGCTTCGCCTT
GCTCCTCTTTCCACAGATCTTCCTCAACCAAGCCCGTCGCTCTACCGAGG
GCCTCTCCCTCTCCCTCGTCCTCTTATGGCATGCCTCCGCGGTCTTGATA
ATCCCCTATTTATTGTACTTAGGCGAGACCTTGCCCCTGTTGTTGCAATG
GGCAGTCTTTGCCTTGGCCAGTGTATTGTTGGAACTGCAATTTTACACGT
TTCGGAAGGGGAAGGGAGGGGAGGAGGGAGGGGAGGAACAAGAGATGGCA
GTTGAAGAGCTCGAAGCTGTTGTAGTCAAAGAGGAGGGCGATAAGTGGGA
AGAAAGTATGGATCCACAAGTCAGAAAACTGAAAACTCATGCCACCAGCG
CCCCCTCCCCCTCGTCCTTCCCCTCCTCCCCTCCCGCACCACCAACATCA
TCCCCCACCCCCTTCCTCCACCTCCTCCTCCTGGGCCTCGCCCTGCTCCT
CCTCACTGTTGGCAGCGTCATCGCCTTGCTCTCCCTCTTCAATGCCGTCC
GATCCAGCACAAGCGGCGCTTTTTTCATCAAGGTTGTCGGGAGCGGGATC
GCCTCCCTCCTGCTCGCCGTGGGGTTCCTACCTCAACTGGTCCTCATGTG
CAAGACACGCAGCAGCCAGGGACTCTCCCTCGGTCTCCCCCTCCTTGATG
TGACAGGGTCTTCCCTTTCCATCCTTGTCCTCTGCCTCGAGGCGAAGGAG
GAAGGGGACGACGTGAATGTGGGAGGCGTGGTCCCGTATGCGATTATTGT
GGGGTTTCAGGTCCTGGTCATTGTCATCGCCTTGGTCATCTTTCCTGATC
CCAATCGTTTCACAAGTAACGGGTTGAGGGAAGGCAGCTTGCAAGAGTTT
TTTGGAGGAAATCATTGATGAAAAGAGCTGCAGAAGCAGCGTTGATAGCT
ATATTGCTGGTGGTGGGGGTTGATATTGAGCGCAGGAGGAGTAGGCAAGA
GCGGCAGGATGGCTCAGCGGGGAACTGTGGGAGGGGCTGAGTGTGGTGCG
TCCCTTCCCTTATGTTGTATGTGAGGCACTTGGCGAGAAGGTCCTTCGGC
TTGTATCTTATTGACTGACGTACTAGTTTGCAGAGACCCGCTAACGGGAA
ATTAATCGGAAATTTAGAATTAAAATTGAAGAAAGGAAGCAATGCAAGAC
CCCTC
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protein sequence of jgi.p|Nanoce1779_2|313990

>mRNA_9844-protein ID=mRNA_9844-protein|Name=jgi.p|Nanoce1779_2|313990|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MRSAKPHSVSISRCPLPCTHARLYSSIFPKRYDPTLIYSLSVQIFHSKLL
LQRHSHITKPTLPSRLLPPSSSLPPPSISRLSMPLNAVIQTCGYIAMVCF
ALLLFPQIFLNQARRSTEGLSLSLVLLWHASAVLIIPYLLYLGETLPLLL
QWAVFALASVLLELQFYTFRKGKGGEEGGEEQEMAVEELEAVVVKEEGDK
WEESMDPQVRKLKTHATSAPSPSSFPSSPPAPPTSSPTPFLHLLLLGLAL
LLLTVGSVIALLSLFNAVRSSTSGAFFIKVVGSGIASLLLAVGFLPQLVL
MCKTRSSQGLSLGLPLLDVTGSSLSILVLCLEAKEEGDDVNVGGVVPYAI
IVGFQVLVIVIALVIFPDPNRFTSNGLREGSLQEFFGGNH*
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mRNA from alignment at scaffold_45:18108..19951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9844 ID=mRNA_9844|Name=jgi.p|Nanoce1779_2|313990|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp|location=Sequence derived from alignment at scaffold_45:18108..19951+ (Nannochloropsis oceanica)
ATCGCCGCCACGGATCCCCAACCCTAGCTCTCTCTCGCTCACACAATGCG
AAGTGCCAAGCCCCACTCTGTATCTATTTCTCGCTGCCCTTTGCCATGCA
CGCATGCACGCCTCTACTCCTCCATATTTCCAAAGAGATATGACCCCACC
TTAATATACTCTCTCTCTGTGCAAATTTTTCATTCCAAGCTGCTTCTGCA
AAGGCACTCGCACATAACAAAACCAACCCTCCCTTCCCGCCTCCTCCCTC
CTTCTTCCTCTCTCCCTCCTCCGTCCATCTCTAGGCTGTCCATGCCTTTG
AATGCTGTCATTCAGACATGTGGATACATAGCCATGGTCTGCTTCGCCTT
GCTCCTCTTTCCACAGATCTTCCTCAACCAAGCCCGTCGCTCTACCGAGG
GCCTCTCCCTCTCCCTCGTCCTCTTATGGCATGCCTCCGCGGTCTTGATA
ATCCCCTATTTATTGTACTTAGGCGAGACCTTGCCCCTGTTGTTGCAATG
GGCAGTCTTTGCCTTGGCCAGTGTATTGTTGGAACTGCAATTTTACACGT
TTCGGAAGGGGAAGGGAGGGGAGGAGGGAGGGGAGGAACAAGAGATGGCA
GTTGAAGAGCTCGAAGCTGTTGTAGTCAAAGAGGAGGGCGATAAGTGGGA
AGAAAGTATGGATCCACAAGTCAGAAAACTGAAAACTCATGCCACCAGCG
CCCCCTCCCCCTCGTCCTTCCCCTCCTCCCCTCCCGCACCACCAACATCA
TCCCCCACCCCCTTCCTCCACCTCCTCCTCCTGGGCCTCGCCCTGCTCCT
CCTCACTGTTGGCAGCGTCATCGCCTTGCTCTCCCTCTTCAATGCCGTCC
GATCCAGCACAAGCGGCGCTTTTTTCATCAAGGTTGTCGGGAGCGGGATC
GCCTCCCTCCTGCTCGCCGTGGGGTTCCTACCTCAACTGGTCCTCATGTG
CAAGACACGCAGCAGCCAGGGACTCTCCCTCGGTCTCCCCCTCCTTGATG
TGACAGGGTCTTCCCTTTCCATCCTTGTCCTCTGCCTCGAGGCGAAGGAG
GAAGGGGACGACGTGAATGTGGGAGGCGTGGTCCCGTATGCGATTATTGT
GGGGTTTCAGGTAGGGCGGGAGGAAGGGATGGAGGGAGGGAGGGAGGGAA
GGTGCATGGGCTTGTCCCTGTAGGATCTGCCTGGCTCCTCGCAGTTGATC
CTGATGCTATATTTGAAGATGAGGGAGGAAGAGGACGATGTAGCTGTAGA
TATGAGAAGAGATACACACCAGGTGGTCATAATAAGGTGTCAGATAAAAG
AGGGAGGGAGGGAAAGAGGGAGGGCAGGGTTCACTGAATGGGTTCTCGTC
TTCTCCTCGTTCTTAAGCTCTTTCTTTCTTTGTCTGCGCATGGGACGCAT
ATCTGACCCCCTTCTCCTCCCCTCCTCCTTCCCTCCTTCTCTCCTTCAGG
TCCTGGTCATTGTCATCGCCTTGGTCATCTTTCCTGATCCCAATCGTTTC
ACAAGTAACGGGTTGAGGGAAGGCAGCTTGCAAGAGTTTTTTGGAGGAAA
TCATTGATGAAAAGAGCTGCAGAAGCAGCGTTGATAGCTATATTGCTGGT
GGTGGGGGTTGATATTGAGCGCAGGAGGAGTAGGCAAGAGCGGCAGGATG
GCTCAGCGGGGAACTGTGGGAGGGGCTGAGTGTGGTGCGTCCCTTCCCTT
ATGTTGTATGTGAGGCACTTGGCGAGAAGGTCCTTCGGCTTGTATCTTAT
TGACTGACGTACTAGTTTGCAGAGACCCGCTAACGGGAAATTAATCGGAA
ATTTAGAATTAAAATTGAAGAAAGGAAGCAATGCAAGACCCCTC
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Coding sequence (CDS) from alignment at scaffold_45:18108..19951+

>mRNA_9844 ID=mRNA_9844|Name=jgi.p|Nanoce1779_2|313990|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at scaffold_45:18108..19951+ (Nannochloropsis oceanica)
ATGCGAAGTGCCAAGCCCCACTCTGTATCTATTTCTCGCTGCCCTTTGCC
ATGCACGCATGCACGCCTCTACTCCTCCATATTTCCAAAGAGATATGACC
CCACCTTAATATACTCTCTCTCTGTGCAAATTTTTCATTCCAAGCTGCTT
CTGCAAAGGCACTCGCACATAACAAAACCAACCCTCCCTTCCCGCCTCCT
CCCTCCTTCTTCCTCTCTCCCTCCTCCGTCCATCTCTAGGCTGTCCATGC
CTTTGAATGCTGTCATTCAGACATGTGGATACATAGCCATGGTCTGCTTC
GCCTTGCTCCTCTTTCCACAGATCTTCCTCAACCAAGCCCGTCGCTCTAC
CGAGGGCCTCTCCCTCTCCCTCGTCCTCTTATGGCATGCCTCCGCGGTCT
TGATAATCCCCTATTTATTGTACTTAGGCGAGACCTTGCCCCTGTTGTTG
CAATGGGCAGTCTTTGCCTTGGCCAGTGTATTGTTGGAACTGCAATTTTA
CACGTTTCGGAAGGGGAAGGGAGGGGAGGAGGGAGGGGAGGAACAAGAGA
TGGCAGTTGAAGAGCTCGAAGCTGTTGTAGTCAAAGAGGAGGGCGATAAG
TGGGAAGAAAGTATGGATCCACAAGTCAGAAAACTGAAAACTCATGCCAC
CAGCGCCCCCTCCCCCTCGTCCTTCCCCTCCTCCCCTCCCGCACCACCAA
CATCATCCCCCACCCCCTTCCTCCACCTCCTCCTCCTGGGCCTCGCCCTG
CTCCTCCTCACTGTTGGCAGCGTCATCGCCTTGCTCTCCCTCTTCAATGC
CGTCCGATCCAGCACAAGCGGCGCTTTTTTCATCAAGGTTGTCGGGAGCG
GGATCGCCTCCCTCCTGCTCGCCGTGGGGTTCCTACCTCAACTGGTCCTC
ATGTGCAAGACACGCAGCAGCCAGGGACTCTCCCTCGGTCTCCCCCTCCT
TGATGTGACAGGGTCTTCCCTTTCCATCCTTGTCCTCTGCCTCGAGGCGA
AGGAGGAAGGGGACGACGTGAATGTGGGAGGCGTGGTCCCGTATGCGATT
ATTGTGGGGTTTCAGGTCCTGGTCATTGTCATCGCCTTGGTCATCTTTCC
TGATCCCAATCGTTTCACAAGTAACGGGTTGAGGGAAGGCAGCTTGCAAG
AGTTTTTTGGAGGAAATCATTGAATGCGAAGTGCCAAGCCCCACTCTGTA
TCTATTTCTCGCTGCCCTTTGCCATGCACGCATGCACGCCTCTACTCCTC
CATATTTCCAAAGAGATATGACCCCACCTTAATATACTCTCTCTCTGTGC
AAATTTTTCATTCCAAGCTGCTTCTGCAAAGGCACTCGCACATAACAAAA
CCAACCCTCCCTTCCCGCCTCCTCCCTCCTTCTTCCTCTCTCCCTCCTCC
GTCCATCTCTAGGCTGTCCATGCCTTTGAATGCTGTCATTCAGACATGTG
GATACATAGCCATGGTCTGCTTCGCCTTGCTCCTCTTTCCACAGATCTTC
CTCAACCAAGCCCGTCGCTCTACCGAGGGCCTCTCCCTCTCCCTCGTCCT
CTTATGGCATGCCTCCGCGGTCTTGATAATCCCCTATTTATTGTACTTAG
GCGAGACCTTGCCCCTGTTGTTGCAATGGGCAGTCTTTGCCTTGGCCAGT
GTATTGTTGGAACTGCAATTTTACACGTTTCGGAAGGGGAAGGGAGGGGA
GGAGGGAGGGGAGGAACAAGAGATGGCAGTTGAAGAGCTCGAAGCTGTTG
TAGTCAAAGAGGAGGGCGATAAGTGGGAAGAAAGTATGGATCCACAAGTC
AGAAAACTGAAAACTCATGCCACCAGCGCCCCCTCCCCCTCGTCCTTCCC
CTCCTCCCCTCCCGCACCACCAACATCATCCCCCACCCCCTTCCTCCACC
TCCTCCTCCTGGGCCTCGCCCTGCTCCTCCTCACTGTTGGCAGCGTCATC
GCCTTGCTCTCCCTCTTCAATGCCGTCCGATCCAGCACAAGCGGCGCTTT
TTTCATCAAGGTTGTCGGGAGCGGGATCGCCTCCCTCCTGCTCGCCGTGG
GGTTCCTACCTCAACTGGTCCTCATGTGCAAGACACGCAGCAGCCAGGGA
CTCTCCCTCGGTCTCCCCCTCCTTGATGTGACAGGGTCTTCCCTTTCCAT
CCTTGTCCTCTGCCTCGAGGCGAAGGAGGAAGGGGACGACGTGAATGTGG
GAGGCGTGGTCCCGTATGCGATTATTGTGGGGTTTCAGGTCCTGGTCATT
GTCATCGCCTTGGTCATCTTTCCTGATCCCAATCGTTTCACAAGTAACGG
GTTGAGGGAAGGCAGCTTGCAAGAGTTTTTTGGAGGAAATCATTGA
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Synonyms
Publications