jgi.p|Nanoce1779_2|609477, mRNA_9881 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609477
Unique NamemRNA_9881
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_45:133696..135531 -

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Properties
Property NameValue
TranscriptId609563
TrackFilteredModels2
ProteinId609477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:133696..135531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609477gene_9881Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609477mRNA_9881-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9881CDS_9881Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9881 ID=mRNA_9881|Name=jgi.p|Nanoce1779_2|609477|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ATTGGCGTATCGAATCATCAGCCTTTCCAAAGAAACCTCCATCCGGATCA
ATATTGACAACAAGTTCCAAGAAGTCCTCTCCAGCTGGAATGGGATGCTA
CGGGTGGTCGATCTCCGCATCCCTTTCCCTTACACCCACGTCGTGAACCT
CTTGACGTTCATTTTTGTCTTTGGGGCCCCCTTTATTTACACTGCCAACG
CTCAGGATTGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTTGCTCCTC
GGCGTTGCCTTTTACGGCCTGGAAGACATGGCGCGCAAGGTCGAAAACCC
CTTCGGCTGGGACGCAGAAGATCACGACTTGGAGGGCTTTGGGATCGGGC
TCAATTTAGACGGCCAAGAAATCGCGAAGATGTGCGGGGTCGTGGAGCCC
ATGGAGTTTATGCCGCACGCCGAACTATTTGACGACCTGACCGAGAAATA
CCAAGTGATTTCCTACAAAGAATACAGGCACACGGCGAGCGTCGTGATGG
AGAGAGAGGACTCGTTTCATGAATCGTAGGTAACTGTCTTTGTGTGGTGG
ATTGGAATCCGAAAAACGACAGAGAATCTGTGTTGTAGAGCATGGCACAT
ATGGAATGTTCTTCTCAGGTGTGTCGTTTGCGTCCTTTGTTTGGACACCG
CAGCAAACGCTCTTGACGATTCAGCCGGATACGTTCTCATCAATGGGTGA
TTTTCTGTAGGGAGTACGTGCACTCTGACACTCGGCATGTCTCAGTAGCG
AAACTCCTTGTTTCTACTTGACTGACTGGAATAGGTAAGAGGGAAAAAAG
TAAAAATTAAAAAAACTTCTGGCACGACCCGTGCTGGCAGTGCTGTTATT
GCTTGTCTTTTCCCTCCGCGTTTATTTTTCCCGGCATTATGTAATATCAC
TTCATATCTAGTTATCTTTTCGGCAGTTACATAGATAAATATGTTTCGAG
TCCTTGGGCGGTCTCGCGGCGCCCGAATCCTTCCGGATTGATCAGACTTA
AGAAAAAAGAGAACAGTTGTAGAAACCTTCAGCTTCAC
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protein sequence of jgi.p|Nanoce1779_2|609477

>mRNA_9881-protein ID=mRNA_9881-protein|Name=jgi.p|Nanoce1779_2|609477|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSL
LLGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGLNLDGQEIAKMCGVV
EPMEFMPHAELFDDLTEKYQVISYKEYRHTASVVMEREDSFHES*
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mRNA from alignment at scaffold_45:133696..135531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9881 ID=mRNA_9881|Name=jgi.p|Nanoce1779_2|609477|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at scaffold_45:133696..135531- (Nannochloropsis oceanica)
ATTGGCGTATCGAATCATCAGCCTTTCCAAAGAAACCTCCATCCGGATCA
ATATTGGTAAGCCCGCTTGCCCTCCCTCCCTCTCTCCCTCTCTCCCTCCC
TTCCTCTGTTCATATATATTTTTTATTTAAAAGAAAAAAAAACCGGTCGT
CCGAGCCAATAGGGAGAGGCCCTTCTTCCAGCCTTCCCTCCCTTTACCTC
CCTCTCTCTTTCTTGCGTTCCTGCCATTGCTCACCTTTCTCCTCTTCCTC
CCTCCCCCACCCTCCCTCCCTCAGACAACAAGTTCCAAGAAGTCCTCTCC
AGCTGGAATGGGATGCTACGGGTAGGCAAAGAGGGAGGGAGGGAGGGAGG
GAGAAGGGACTTGTAAAGCACAAAGCAAGGGAATTAAAAAAAGCCGATCC
CGTCCGCGGCACGCTCTCATTCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TCATCTTCGTCATATCCCAGGTGGTCGATCTCCGCATCCCTTTCCCTTAC
ACCCACGTCGTGAACCTCTTGACGTTCATTTTTGTCTTTGGGGCCCCCTT
TATTTACACTGCCAACGCTCAGGATTGGGCGGGAGACGACGTCATCCTCC
TCTCTTCCTTGCTCCTCGGCGTTGCCTTTTACGGCCTGGAAGACATGGCG
CGCAAGGTCCGTGTCTTCCTCCCTCCCTCCCTACCTCCTTCCCTCCTTCC
CTCCTTCCTTCCTTCCCTCACTTTAGTCTGTGACTGCATAGTCTGACAAT
CTTTTATGCACATTTGACTGCCATTCCCCCTTCTCAGTCTCTCCCTCTCT
CTTTCACTCACTCACTTTCTTGCGCTGATTCTCGCTCTCTCCTTCCTCAG
GTCGAAAACCCCTTCGGCTGGGACGCAGAAGATCACGACTTGGAGGGCTT
TGGGATCGGGCTCAATTTAGGTAAAGCAAGAAGAACAGAAATTACGAAAT
CAAGGGGATGGTTAAAGAAGGTGCGGGAAAACTGTTACGCTGTATCCCAG
CGGGCGACACGTTATCACCAGCCTTTTCCACCATGTCCGTGCACCTCTTT
GTCTCTGCGTTCACGTTTCTACAAACGTCACAGACATCTGCTACACACCC
TGATCCCAAACATCTCTCCTCCATCTTCCTTCCTTCCTCCCTCCTTCCCT
CCCACAGACGGCCAAGAAATCGCGAAGATGTGCGGGGTCGTGGAGCCCAT
GGAGTTTATGCCGCACGCCGAACTATTTGACGACCTGACCGAGAAATACC
AAGTGATTTCCTACAAAGAATACAGGCACACGGCGAGCGTCGTGATGGAG
AGAGAGGACTCGTTTCATGAATCGTAGGTAACTGTCTTTGTGTGGTGGAT
TGGAATCCGAAAAACGACAGAGAATCTGTGTTGTAGAGCATGGCACATAT
GGAATGTTCTTCTCAGGTGTGTCGTTTGCGTCCTTTGTTTGGACACCGCA
GCAAACGCTCTTGACGATTCAGCCGGATACGTTCTCATCAATGGGTGATT
TTCTGTAGGGAGTACGTGCACTCTGACACTCGGCATGTCTCAGTAGCGAA
ACTCCTTGTTTCTACTTGACTGACTGGAATAGGTAAGAGGGAAAAAAGTA
AAAATTAAAAAAACTTCTGGCACGACCCGTGCTGGCAGTGCTGTTATTGC
TTGTCTTTTCCCTCCGCGTTTATTTTTCCCGGCATTATGTAATATCACTT
CATATCTAGTTATCTTTTCGGCAGTTACATAGATAAATATGTTTCGAGTC
CTTGGGCGGTCTCGCGGCGCCCGAATCCTTCCGGATTGATCAGACTTAAG
AAAAAAGAGAACAGTTGTAGAAACCTTCAGCTTCAC
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Coding sequence (CDS) from alignment at scaffold_45:133696..135531-

>mRNA_9881 ID=mRNA_9881|Name=jgi.p|Nanoce1779_2|609477|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at scaffold_45:133696..135531- (Nannochloropsis oceanica)
ACGGCCAAGAAATCGCGAAGATGTGCGGGGTCGTGGAGCCCATGGAGTTT
ATGCCGCACGCCGAACTATTTGACGACCTGACCGAGAAATACCAAGTGAT
TTCCTACAAAGAATACAGGCACACGGCGAGCGTCGTGATGGAGAGAGAGG
ACTCGTTTCATGAATCGTAGGTCGAAAACCCCTTCGGCTGGGACGCAGAA
GATCACGACTTGGAGGGCTTTGGGATCGGGCTCAATTTAGGTGGTCGATC
TCCGCATCCCTTTCCCTTACACCCACGTCGTGAACCTCTTGACGTTCATT
TTTGTCTTTGGGGCCCCCTTTATTTACACTGCCAACGCTCAGGATTGGGC
GGGAGACGACGTCATCCTCCTCTCTTCCTTGCTCCTCGGCGTTGCCTTTT
ACGGCCTGGAAGACATGGCGCGCAAGATGCTACGGACGGCCAAGAAATCG
CGAAGATGTGCGGGGTCGTGGAGCCCATGGAGTTTATGCCGCACGCCGAA
CTATTTGACGACCTGACCGAGAAATACCAAGTGATTTCCTACAAAGAATA
CAGGCACACGGCGAGCGTCGTGATGGAGAGAGAGGACTCGTTTCATGAAT
CGTAGGTCGAAAACCCCTTCGGCTGGGACGCAGAAGATCACGACTTGGAG
GGCTTTGGGATCGGGCTCAATTTAGGTGGTCGATCTCCGCATCCCTTTCC
CTTACACCCACGTCGTGAACCTCTTGACGTTCATTTTTGTCTTTGGGGCC
CCCTTTATTTACACTGCCAACGCTCAGGATTGGGCGGGAGACGACGTCAT
CCTCCTCTCTTCCTTGCTCCTCGGCGTTGCCTTTTACGGCCTGGAAGACA
TGGCGCGCAAGATGCTACGGACGGCCAAGAAATCGCGAAGATGTGCGGGG
TCGTGGAGCCCATGGAGTTTATGCCGCACGCCGAACTATTTGACGACCTG
ACCGAGAAATACCAAGTGATTTCCTACAAAGAATACAGGCACACGGCGAG
CGTCGTGATGGAGAGAGAGGACTCGTTTCATGAATCGTAGGTCGAAAACC
CCTTCGGCTGGGACGCAGAAGATCACGACTTGGAGGGCTTTGGGATCGGG
CTCAATTTAGGTGGTCGATCTCCGCATCCCTTTCCCTTACACCCACGTCG
TGAACCTCTTGACGTTCATTTTTGTCTTTGGGGCCCCCTTTATTTACACT
GCCAACGCTCAGGATTGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTT
GCTCCTCGGCGTTGCCTTTTACGGCCTGGAAGACATGGCGCGCAAGATGC
TACGGACGGCCAAGAAATCGCGAAGATGTGCGGGGTCGTGGAGCCCATGG
AGTTTATGCCGCACGCCGAACTATTTGACGACCTGACCGAGAAATACCAA
GTGATTTCCTACAAAGAATACAGGCACACGGCGAGCGTCGTGATGGAGAG
AGAGGACTCGTTTCATGAATCGTAGGTCGAAAACCCCTTCGGCTGGGACG
CAGAAGATCACGACTTGGAGGGCTTTGGGATCGGGCTCAATTTAGGTGGT
CGATCTCCGCATCCCTTTCCCTTACACCCACGTCGTGAACCTCTTGACGT
TCATTTTTGTCTTTGGGGCCCCCTTTATTTACACTGCCAACGCTCAGGAT
TGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTTGCTCCTCGGCGTTGC
CTTTTACGGCCTGGAAGACATGGCGCGCAAGATGCTACGG
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Synonyms
Publications