jgi.p|Nanoce1779_2|318632, mRNA_10250 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|318632
Unique NamemRNA_10250
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length944
Alignment locationscaffold_47:5267..7568 -

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Properties
Property NameValue
TranscriptId318718
TrackFilteredModels2
ProteinId318632
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:5267..7568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318632gene_10250Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|318632mRNA_10250-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10250CDS_10250Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10250 ID=mRNA_10250|Name=jgi.p|Nanoce1779_2|318632|organism=Nannochloropsis oceanica|type=mRNA|length=944bp
TGCGGAAATGCAGCAGCCTCCTCCTCTCCTCTCATTCTCTTCCCTTGTGT
TTCTTCCATTGCTCCCCCATCCCTCCTCAATGCCTTTCCTATATCGTCCA
AGAACACCTTCACCTCCTCCATCCCCTTTCCTTCTCCCGTCTTGCCTCCG
ACTCCAGAGGCGACTCTTCTGGTTGATTTTGTTGTTGTTGTTGTTGCTGC
TGCTGCTGCTGCTGGTGGTGGTGGTGCTGGTGCTGGTGCTGGTGCTCCTC
CCCCTTGCCTCCCGCCTCCCCTCGGGATATAGCCAGCGTCGCCAACGTAG
CCATGGCGTCACTCGCCGCTTTGGCCTTCTCCTCCTCCTCCTCCGCCACC
CCTCCCTCCCTTCCTGCTTCCCCCTCTCCCCCCTCTTCGGCATTGAAGAT
CAATGGGCCCAAGGGCGCGGCTTCAAGGGCAGCAGCAGAAGCATCCGTTG
CAACAGCAGCCGCACGCGTGCCCGTCTCTCGGGTCATTAATGTGCGTCGA
CTATTTCTCCTTCTCGTGGACGTGCTGGCAGCAGCAGCGGCAGGTCTTCC
TCCTGTACCTCCCGGCGATATGGCATCTGCTGTCCCTCCTTCTGCCGTTT
CTCCTGTAGCTCTTCCTACTACTACTGCTCCTCCTCCACCTCCTCCTCCT
CCTCCTGCTGCTGTTCCATTTCTTGATTTTCGTGGGGGCTTGCCGGTGGC
AGCTCGCATCTTGGCGACATACCTACAGGAGCAGAGAAGGGAAGAGGGGA
AAAAATTAATATATCTGAATAAAGAAGTAAATCACCAAGACATACATAGT
ATATGTATATATGTTAATCAAAAGGACAGAACCAGGAGCCAAGATGACCA
GAAAGATAACCACTACAACAACTACACTTGAAAAACATACCCCTCCCCCC
TTCCCTTCTTCCCTCCTTCCCTCCTTCCATCCCTTCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|318632

>mRNA_10250-protein ID=mRNA_10250-protein|Name=jgi.p|Nanoce1779_2|318632|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MASLAALAFSSSSSATPPSLPASPSPPSSALKINGPKGAASRAAAEASVA
TAAARVPVSRVINVRRLFLLLVDVLAAAAAGLPPVPPGDMASAVPPSAVS
PVALPTTTAPPPPPPPPPAAVPFLDFRGGLPVAARILATYLQEQRREEGK
KLIYLNKEVNHQDIHSICIYVNQKDRTRSQDDQKDNHYNNYT*
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mRNA from alignment at scaffold_47:5267..7568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10250 ID=mRNA_10250|Name=jgi.p|Nanoce1779_2|318632|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at scaffold_47:5267..7568- (Nannochloropsis oceanica)
TGCGGAAATGCAGCAGCCTCCTCCTCTCCTCTCATTCTCTTCCCTTGTGT
TTCTTCCATTGCTCCCCCATCCCTCCTCAATGCCTTTCCTATATCGTCCA
AGAACACCTTCACCTCCTCCATCCCCTTTCCTTCCTCCTTCCCTCCCTCC
TTCCCTCCCTCCCTCCTTCCCGTCCACCCCTCAACGGCCGCAAAAACGTT
TTCCTCCTCACTCCACAATAAGACCAGGGCATCAAGGCAGAGAGAGCGGG
GCAAGGAGTCCTCCTCCGTGCCTCGCAGCAGCAAGCCTACGTAGTCTTCG
AAAGCACGACGGGCAGGACTGACGGGAAGGAGGGAGCAAGGGAGGGAGGG
AGGGAGGGAGGGAGGAGGACGAGGGTAAGAAGGTGAGTGATTGAAATAAG
TGCATTGTCCAATCCCTTTTAGATAGCCATGACAATAATGAGGAAGGATG
GAGGGAGAAAGGGAGGGAGGGAATGAAGGAGGGAAGGTCATCTATAGATC
GTACCTACCTCGGTTCTCCGCTTGAGGCATGGCAGGGGTACGCGCATCTT
CCCTCATCATACGCTGCCGTCAGTACTGGCAAAACAATTTTTTCTCCTCC
CTCATTCCCTCCTTCTCCTCTTTCGTCCCCCTCCCCTCCATGTCTACCAG
TGGCCGCTTCTGAGGTGGATGAGGAAGAGGAAGGGAGGGAGGAAGGAGTA
GCCGCAGCTGCAGCTTCTCCTGACGAAAGGGAAGGGAGACTTGCAGCAGC
TGCAGCAGCCGCAGCAGCAGCGGTAGGGGCAAGGAGGTTGGACTGGTACG
TGTTGACAGTAACATAAGAAGGGGCAGAGGGAGGGAGGGAGGGAGGGAGT
GAGGGAGGGGTAGCGTCCTCTTCCTCCTCCTTCTCCCGTCTTGCCTCCGA
CTCCAGAGGCGACTCTTCTGGTTGATTTTGTTGTTGTTGTTGTTGCTGCT
GCTGCTGCTGCTGGTGGTGGTGGTGCTGGTGCTGGTGCTGGTGCTCCTCC
CCCTTGCCTCCCGCCTCCCCTCGGGATATAGCCAGCGTCGCCAACGTAGC
CATGGCGTCACTCGCCGCTTTGGCCTTCTCCTCCTCCTCCTCCGCCACCC
CTCCCTCCCTTCCTGCTTCCCCCTCTCCCCCCTCTTCGGCATTGAAGATC
AATGGGCCCAAGGGCGCGGCTTCAAGGGCAGCAGCAGAAGCATCCGTTGC
AACAGCAGCCGCACGCGTGCCCGTCTCTCGGGTCATTAATGTGCGTCGAC
TATTTCTCCTTCTCGTGGACGTGCTGGCAGCAGCAGCGGCAGGGTCTTCC
TCCCCCTCCTTCGCCAAATCCCTTCCGTTTCTGTTGATGGCTCCCTCCCC
ATCCTCCCTCTCCTCCTCCTTCCCTCCCCCCTTAATAGTCGCCATATCTC
CTTCTCCGCCTCCTTTTTCGCCTCCCGTCCTCCCTCCCCTCCTCGTCCTC
ACCAATGGAGCCTCAACAGCTGCTGCTCCTGCTCCTGCTGCCCCTACTCC
TCTAGCCGTCCTCCTCCTCTTGCTCACGCGTATAGTTTCTCCCTCTTCCC
CTTCCTCCTCCTCTTCCTCCCTCGCGTCCTCCCCCGGTCCCTCTGTCCTT
TTGTCCTCCTCGTACTGGGTCGTCACAGGAGGAGAACGTGATGCAGCAGA
CATCTCCTCCCTCCGTCTCTCCTCCCTTCCCTCCTGCTCATTTTCCTCCC
CCACCACGTCTCCCTCCTTTCCTCCTTCTTCTTCCCCTCCTTCCGTTCCA
CCGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCTGTGGC
CGTTCCTTCCGCTTCGGCCTCTGCCTCGGCAGCCGCTGCAGCCGCTGCCA
TGTCCATCAACCCTCCCCCCCCTCTTCCCCCCTCTCCACCTACCCCTTCT
TCTCTTCCTCCTGTACCTCCCGGCGATATGGCATCTGCTGTCCCTCCTTC
TGCCGTTTCTCCTGTAGCTCTTCCTACTACTACTGCTCCTCCTCCACCTC
CTCCTCCTCCTCCTGCTGCTGTTCCATTTCTTGATTTTCGTGGGGGCTTG
CCGGTGGCAGCTCGCATCTTGGCGACATACCTACAGGAGCAGAGAAGGGA
AGAGGGGAAAAAATTAATATATCTGAATAAAGAAGTAAATCACCAAGACA
TACATAGTATATGTATATATGTTAATCAAAAGGACAGAACCAGGAGCCAA
GATGACCAGAAAGATAACCACTACAACAACTACACTTGAAAAACATACCC
CTCCCCCCTTCCCTTCTTCCCTCCTTCCCTCCTTCCATCCCTTCCTCCCT
CC
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Coding sequence (CDS) from alignment at scaffold_47:5267..7568-

>mRNA_10250 ID=mRNA_10250|Name=jgi.p|Nanoce1779_2|318632|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_47:5267..7568- (Nannochloropsis oceanica)
TCTTCCTCCTGTACCTCCCGGCGATATGGCATCTGCTGTCCCTCCTTCTG
CCGTTTCTCCTGTAGCTCTTCCTACTACTACTGCTCCTCCTCCACCTCCT
CCTCCTCCTCCTGCTGCTGTTCCATTTCTTGATTTTCGTGGGGGCTTGCC
GGTGGCAGCTCGCATCTTGGCGACATACCTACAGGAGCAGAGAAGGGAAG
AGGGGAAAAAATTAATATATCTGAATAAAGAAGTAAATCACCAAGACATA
CATAGTATATGTATATATGTTAATCAAAAGGACAGAACCAGGAGCCAAGA
TGACCAGAAAGATAACCACTACAACAACTACACTTGAATGGCGTCACTCG
CCGCTTTGGCCTTCTCCTCCTCCTCCTCCGCCACCCCTCCCTCCCTTCCT
GCTTCCCCCTCTCCCCCCTCTTCGGCATTGAAGATCAATGGGCCCAAGGG
CGCGGCTTCAAGGGCAGCAGCAGAAGCATCCGTTGCAACAGCAGCCGCAC
GCGTGCCCGTCTCTCGGGTCATTAATGTGCGTCGACTATTTCTCCTTCTC
GTGGACGTGCTGGCAGCAGCAGCGGCAGGTCTTCCTCCTGTACCTCCCGG
CGATATGGCATCTGCTGTCCCTCCTTCTGCCGTTTCTCCTGTAGCTCTTC
CTACTACTACTGCTCCTCCTCCACCTCCTCCTCCTCCTCCTGCTGCTGTT
CCATTTCTTGATTTTCGTGGGGGCTTGCCGGTGGCAGCTCGCATCTTGGC
GACATACCTACAGGAGCAGAGAAGGGAAGAGGGGAAAAAATTAATATATC
TGAATAAAGAAGTAAATCACCAAGACATACATAGTATATGTATATATGTT
AATCAAAAGGACAGAACCAGGAGCCAAGATGACCAGAAAGATAACCACTA
CAACAACTACACTTGAATGGCGTCACTCGCCGCTTTGGCCTTCTCCTCCT
CCTCCTCCGCCACCCCTCCCTCCCTTCCTGCTTCCCCCTCTCCCCCCTCT
TCGGCATTGAAGATCAATGGGCCCAAGGGCGCGGCTTCAAGGGCAGCAGC
AGAAGCATCCGTTGCAACAGCAGCCGCACGCGTGCCCGTCTCTCGGGTCA
TTAATGTGCGTCGACTATTTCTCCTTCTCGTGGACGTGCTGGCAGCAGCA
GCGGCAGG
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Synonyms
Publications