jgi.p|Nanoce1779_2|319308, mRNA_10261 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|319308
Unique NamemRNA_10261
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length730
Alignment locationscaffold_47:55436..57150 -

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Properties
Property NameValue
TranscriptId319394
TrackFilteredModels2
ProteinId319308
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:55436..57150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|319308gene_10261Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|319308mRNA_10261-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10261CDS_10261Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10261 ID=mRNA_10261|Name=jgi.p|Nanoce1779_2|319308|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
CACTCAAATTCAAACATTTAAATTTAAACAGGTTAACGTCGAGGAAGGGG
CCGGTGGCGAGGAGGACGCCTCTGTCAGCACCACAGCCGAGAAGGTTAGC
GAGGTTGGCGATGATTCTACCAAGGCCGTTTCGGTCGTTGCTCCGGCCAT
GAAATCCGTTGGGAGCACGGGGTCCTTGCTCGTCCGCCTTCACCAGGGGC
AGGACCTGGCGCCGAAGGATTCTAACGGTTTCTCCGATCCGTTTGCCTCC
CTTTTCTACACCAATAAGTTGGTGGGTCAGACGCCTGTTTTCCCCAAAAC
ACTCTCTCCCAAGTTTGAGTGGAACAAGGAGTACGTGGTGCAAGACATTG
ATCGCGTCCGCTTCACCCTCCGAGTCTTCGACAAGGAGGAGATCGGATCG
AGTGATGCCATGGGAGACCTCGATATCGACATGAAGGAAATCTTCCCCAT
CAAAAATCAAGGCACGGGCGAGCGTGACTTCGTCGTCCTCAAGAAATGGA
TGCCACTGCGTGCTCCCGGGCCTGTCATTGAGACGACCAGGACAGCTGCC
GACTTGAAGCGTCGAGCCCCTGCTAAGAAAGAGACTGCAATTTCCAGGCT
GACCTGGGCAATCCCGAGGACGACCTCTCTCTAACCCCCTACCAGGGCAG
CGCACTGGATGCCATCGGCTCAGGCCTAGGAAAAGGTGTGGGGGCCATCG
GGAGTAAGATCGGAGCTGTGGGTGGTGGCG
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protein sequence of jgi.p|Nanoce1779_2|319308

>mRNA_10261-protein ID=mRNA_10261-protein|Name=jgi.p|Nanoce1779_2|319308|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MKSVGSTGSLLVRLHQGQDLAPKDSNGFSDPFASLFYTNKLVGQTPVFPK
TLSPKFEWNKEYVVQDIDRVRFTLRVFDKEEIGSSDAMGDLDIDMKEIFP
IKNQGTGERDFVVLKKWMPLRAPGPVIETTRTAADLKRRAPAKKETAISR
LTWAIPRTTSL*
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mRNA from alignment at scaffold_47:55436..57150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10261 ID=mRNA_10261|Name=jgi.p|Nanoce1779_2|319308|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at scaffold_47:55436..57150- (Nannochloropsis oceanica)
CACTCAAATTCAAACATTTAAATTTAAACAGGTTAACGTCGAGGAAGGGG
CCGGTGGCGAGGAGGACGCCTCTGTCAGCACCACAGCCGAGAAGGTACGT
TGATTACCCCTGTCGTTCCTCCCCTTCCTCCTTTCCTTCCTCCCTCCCTA
ACTCCTCCTCTTCGATCTCAAGCTCTTTAACACTATTAGGCGTACCTACC
ACTGAGCCCCTCTCTTCGTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCC
GCCCTCCCATCTCAGGTTAGCGAGGTTGGCGATGATTCTACCAAGGCCGT
TTCGGTCGTTGCTCCGGCCATGAAATCCGTTGGGAGCACGGGGTCCTTGC
TCGTCCGCCTTCACCAGGTGCTGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGGATGCCTTCAACGGAACTTCGCCGATGTGGATCTGACACTTGTC
CCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCTCCC
TCCCTCCCTTAGGGGCAGGACCTGGCGCCGAAGGATTCTAACGGTTTCTC
CGATCCGTTTGCCTCCCTTTTCTACACCAATAAGTTGGTGGGTCAGACGC
CTGTTTTCCCCAAAACACTCTCTCCCAAGTTTGAGTGGAACAAGGTACGC
CCTTCCTCCCTCCCTCCCTCACTCCCTCTTTCCGTTTCGATTTTCCATGT
CCTACTCGCCGTGTCCATCAATTCCCATCCTCCCTCCCTCATTCCCTCCC
TCCCTTCCTCCCTCCCTCCCTCCCTTCCCTCCTTTCTAGGAGTACGTGGT
GCAAGACATTGATCGCGTCCGCTTCACCCTCCGAGTCTTCGACAAGGAGG
AGATCGGATCGAGTGATGCCATGGGAGACCTCGATATCGACATGAAGGAA
ATCTTCCCCATCAAAAATCAAGGTGCGAAGTCCCTCCCTCCTTCCCCCCG
ACCTCGATCCGTATCTCTTCTCCCCGACTTTCCACCCACCCTCCCTCCCT
CCCTCCTTAGGCACGGGCGAGCGTGACTTCGTCGTCCTCAAGAAATGGAT
GCCACTGCGTGCTCCCGGGCCTGTCATTGAGACGACCAGGACAGCTGCCG
ACTTGAAGCGTCGAGCCCCTGCTAAGAAAGAGACTGGTACTTACCCTTCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCATCCCGCCTCTCTGTTCTTGCCTCCTTCCCTTCCTGC
TTCCTCCCATTCACCAGCCTCTCGGTCCATCCTCCCTCCGTCATGCTCTT
TTATGTCAACTTCACCGCTCTTCCCCCCTCCCTCTTTCCCTTCCTCCCTC
CAGGCTTCGGCCATGTCCTCCTGTCGTTCATTTTCCGTCCCACTGATATC
CCTCCCGGCCTCAGCAATTTCCAGGCTGACCTGGGCAATCCCGAGGTACG
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTGGTGTATTCCCTCCCTCCTTTCGTCCCTCCCTCCCTTGCAC
CATTCCCGGCACTCACATTTCTCCCTCCTTCCTCCCCCCCTTTCCTTCAT
CAGGACGACCTCTCTCTAACCCCCTACCAGGGCAGCGCACTGGATGCCAT
CGGCTCAGGCCTAGGAAAAGGTGTGGGGGCCATCGGGAGTAAGATCGGAG
CTGTGGGTGGTGGCG
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Coding sequence (CDS) from alignment at scaffold_47:55436..57150-

>mRNA_10261 ID=mRNA_10261|Name=jgi.p|Nanoce1779_2|319308|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_47:55436..57150- (Nannochloropsis oceanica)
GACGACCTCTCTCTAACAATTTCCAGGCTGACCTGGGCAATCCCGAGGCA
CGGGCGAGCGTGACTTCGTCGTCCTCAAGAAATGGATGCCACTGCGTGCT
CCCGGGCCTGTCATTGAGACGACCAGGACAGCTGCCGACTTGAAGCGTCG
AGCCCCTGCTAAGAAAGAGACTGGAGTACGTGGTGCAAGACATTGATCGC
GTCCGCTTCACCCTCCGAGTCTTCGACAAGGAGGAGATCGGATCGAGTGA
TGCCATGGGAGACCTCGATATCGACATGAAGGAAATCTTCCCCATCAAAA
ATCAAGGGGCAGGACCTGGCGCCGAAGGATTCTAACGGTTTCTCCGATCC
GTTTGCCTCCCTTTTCTACACCAATAAGTTGGTGGGTCAGACGCCTGTTT
TCCCCAAAACACTCTCTCCCAAGTTTGAGTGGAACAAGATGAAATCCGTT
GGGAGCACGGGGTCCTTGCTCGTCCGCCTTCACCAGGACGACCTCTCTCT
AACAATTTCCAGGCTGACCTGGGCAATCCCGAGGCACGGGCGAGCGTGAC
TTCGTCGTCCTCAAGAAATGGATGCCACTGCGTGCTCCCGGGCCTGTCAT
TGAGACGACCAGGACAGCTGCCGACTTGAAGCGTCGAGCCCCTGCTAAGA
AAGAGACTGGAGTACGTGGTGCAAGACATTGATCGCGTCCGCTTCACCCT
CCGAGTCTTCGACAAGGAGGAGATCGGATCGAGTGATGCCATGGGAGACC
TCGATATCGACATGAAGGAAATCTTCCCCATCAAAAATCAAGGGGCAGGA
CCTGGCGCCGAAGGATTCTAACGGTTTCTCCGATCCGTTTGCCTCCCTTT
TCTACACCAATAAGTTGGTGGGTCAGACGCCTGTTTTCCCCAAAACACTC
TCTCCCAAGTTTGAGTGGAACAAGATGAAATCCGTTGGGAGCACGGGGTC
CTTGCTCGTCCGCCTTCACCAGGACGACCTCTCTCTAACAATTTCCAGGC
TGACCTGGGCAATCCCGAGGCACGGGCGAGCGTGACTTCGTCGTCCTCAA
GAAATGGATGCCACTGCGTGCTCCCGGGCCTGTCATTGAGACGACCAGGA
CAGCTGCCGACTTGAAGCGTCGAGCCCCTGCTAAGAAAGAGACTGGAGTA
CGTGGTGCAAGACATTGATCGCGTCCGCTTCACCCTCCGAGTCTTCGACA
AGGAGGAGATCGGATCGAGTGATGCCATGGGAGACCTCGATATCGACATG
AAGGAAATCTTCCCCATCAAAAATCAAGGGGCAGGACCTGGCGCCGAAGG
ATTCTAACGGTTTCTCCGATCCGTTTGCCTCCCTTTTCTACACCAATAAG
TTGGTGGGTCAGACGCCTGTTTTCCCCAAAACACTCTCTCCCAAGTTTGA
GTGGAACAAGATGAAATCCGTTGGGAGCACGGGGTCCTTGCTCGTCCGCC
TTCACCAGGACGACCTCTCTCTAACAATTTCCAGGCTGACCTGGGCAATC
CCGAGGCACGGGCGAGCGTGACTTCGTCGTCCTCAAGAAATGGATGCCAC
TGCGTGCTCCCGGGCCTGTCATTGAGACGACCAGGACAGCTGCCGACTTG
AAGCGTCGAGCCCCTGCTAAGAAAGAGACTGGAGTACGTGGTGCAAGACA
TTGATCGCGTCCGCTTCACCCTCCGAGTCTTCGACAAGGAGGAGATCGGA
TCGAGTGATGCCATGGGAGACCTCGATATCGACATGAAGGAAATCTTCCC
CATCAAAAATCAAGGGGCAGGACCTGGCGCCGAAGGATTCTAACGGTTTC
TCCGATCCGTTTGCCTCCCTTTTCTACACCAATAAGTTGGTGGGTCAGAC
GCCTGTTTTCCCCAAAACACTCTCTCCCAAGTTTGAGTGGAACAAGATGA
AATCCGTTGGGAGCACGGGGTCCTTGCTCGTCCGCCTTCACCAGGACGAC
CTCTCTCTAACAATTTCCAGGCTGACCTGGGCAATCCCGAGGCACGGGCG
AGCGTGACTTCGTCGTCCTCAAGAAATGGATGCCACTGCGTGCTCCCGGG
CCTGTCATTGAGACGACCAGGACAGCTGCCGACTTGAAGCGTCGAGCCCC
TGCTAAGAAAGAGACTGGAGTACGTGGTGCAAGACATTGATCGCGTCCGC
TTCACCCTCCGAGTCTTCGACAAGGAGGAGATCGGATCGAGTGATGCCAT
GGGAGACCTCGATATCGACATGAAGGAAATCTTCCCCATCAAAAATCAAG
GGGCAGGACCTGGCGCCGAAGGATTCTAACGGTTTCTCCGATCCGTTTGC
CTCCCTTTTCTACACCAATAAGTTGGTGGGTCAGACGCCTGTTTTCCCCA
AAACACTCTCTCCCAAGTTTGAGTGGAACAAGATGAAATCCGTTGGGAGC
ACGGGGTCCTTGCTCGTCCGCCTTCACCAGGACGACCTCTCTCTAACAAT
TTCCAGGCTGACCTGGGCAATCCCGAGGCACGGGCGAGCGTGACTTCGTC
GTCCTCAAGAAATGGATGCCACTGCGTGCTCCCGGGCCTGTCATTGAGAC
GACCAGGACAGCTGCCGACTTGAAGCGTCGAGCCCCTGCTAAGAAAGAGA
CTGGAGTACGTGGTGCAAGACATTGATCGCGTCCGCTTCACCCTCCGAGT
CTTCGACAAGGAGGAGATCGGATCGAGTGATGCCATGGGAGACCTCGATA
TCGACATGAAGGAAATCTTCCCCATCAAAAATCAAGGGGCAGGACCTGGC
GCCGAAGGATTCTAACGGTTTCTCCGATCCGTTTGCCTCCCTTTTCTACA
CCAATAAGTTGGTGGGTCAGACGCCTGTTTTCCCCAAAACACTCTCTCCC
AAGTTTGAGTGGAACAAGATGAAATCCGTTGGGAGCACGGGGTCCTTGCT
CGTCCGCCTTCACCAG
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Synonyms
Publications