jgi.p|Nanoce1779_2|610346, mRNA_9984 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610346
Unique NamemRNA_9984
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length543
Alignment locationscaffold_49:97338..98148 +

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Properties
Property NameValue
TranscriptId610432
TrackFilteredModels2
ProteinId610346
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:97338..98148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610346gene_9984Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610346mRNA_9984-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9984CDS_9984Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9984 ID=mRNA_9984|Name=jgi.p|Nanoce1779_2|610346|organism=Nannochloropsis oceanica|type=mRNA|length=543bp
AACAGAGCAACATGTCCTCATTTTTGGTTGCCACCACCCGGCAGTGCTGC
CGGCGGGTAAGCATGCTCCCGACCACCAGGTGGACATCAGCCCCGCTCTC
TGTGCAAGCAACAACAGCAGCGGCGTCCTATCACAAGACCGCTACGGGGC
CCGTGGGCTTGGAAGTGAACCCCAACTCCCGTGACGACTTTATCAAGCAA
CAAAAGACCTTGTTGGAGAAGGTCAAGAAATTTCCTGCTGACGCGGAGTA
TCGCAAGGTGATTACGTCCATCGCGACCTATCGTCTGGGAAAAGCCGAGG
CCATCACAGACCCTGTTGCCTTAGAGAAGGAATTGGACGATGGGCAGTTG
GAGGAGATGCTGGCGCAGGGGGAGGATGAGTTGATGTTGATGGATGATTA
TGAGGAGAGGAAATATTGGGAGACGGAGGAGGTCAAGGCGGCTTTTAGGG
ACTAGAGAAGGAGGGAGGGAAGAAGGGAGGGGTGGTAGTGGCATTAGAGG
AGAGGGGTAGAAGGATGGGATGGAGGGAGAGAGAAGCAGCTGC
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protein sequence of jgi.p|Nanoce1779_2|610346

>mRNA_9984-protein ID=mRNA_9984-protein|Name=jgi.p|Nanoce1779_2|610346|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MSSFLVATTRQCCRRVSMLPTTRWTSAPLSVQATTAAASYHKTATGPVGL
EVNPNSRDDFIKQQKTLLEKVKKFPADAEYRKVITSIATYRLGKAEAITD
PVALEKELDDGQLEEMLAQGEDELMLMDDYEERKYWETEEVKAAFRD*
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mRNA from alignment at scaffold_49:97338..98148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9984 ID=mRNA_9984|Name=jgi.p|Nanoce1779_2|610346|organism=Nannochloropsis oceanica|type=mRNA|length=811bp|location=Sequence derived from alignment at scaffold_49:97338..98148+ (Nannochloropsis oceanica)
AACAGAGCAACATGTCCTCATTTTTGGTTGCCACCACCCGGCAGTGCTGC
CGGCGGGTAAGCATGCTCCCGACCACCAGGTGGACATCAGCCCCGCTCTC
TGTGCAAGCAACAACAGCAGCGGCGTCCTATCACAAGACCGCTACGGGGC
CCGTGGGCTTGGAAGTGAACCCCAACTCCCGTGACGACTTTATCAAGCAA
CAAAAGACCTTGTTGGAGAAGGTCAAGGTGTGTGGGGGGTGGGGTGGAAG
AGGATAAAGGGGGAAAGGAGAGGAGGAGGATGGGAAGAGGCGGAGGGATA
GGGTGACGGGGAATGAAAGCTAGTTGAAAGCACATGTGTGCTTTTCTTGT
GCATGAGAGCCTGGACAATAGCATTTGGTGTGGAGTACCGTGGTTATGCG
GACACTAAAGTTTCATGAATTCTCTGATTATAGAACAAGGGCGTTCACAG
CCATACCTCCCTCCCCTCCTCCCTTCTCTCCTTCCCTCAAAACAGAAATT
TCCTGCTGACGCGGAGTATCGCAAGGTGATTACGTCCATCGCGACCTATC
GTCTGGGAAAAGCCGAGGCCATCACAGACCCTGTTGCCTTAGAGAAGGAA
TTGGACGATGGGCAGTTGGAGGAGATGCTGGCGCAGGGGGAGGATGAGTT
GATGTTGATGGATGATTATGAGGAGAGGAAATATTGGGAGACGGAGGAGG
TCAAGGCGGCTTTTAGGGACTAGAGAAGGAGGGAGGGAAGAAGGGAGGGG
TGGTAGTGGCATTAGAGGAGAGGGGTAGAAGGATGGGATGGAGGGAGAGA
GAAGCAGCTGC
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Coding sequence (CDS) from alignment at scaffold_49:97338..98148+

>mRNA_9984 ID=mRNA_9984|Name=jgi.p|Nanoce1779_2|610346|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_49:97338..98148+ (Nannochloropsis oceanica)
ATGTCCTCATTTTTGGTTGCCACCACCCGGCAGTGCTGCCGGCGGGTAAG
CATGCTCCCGACCACCAGGTGGACATCAGCCCCGCTCTCTGTGCAAGCAA
CAACAGCAGCGGCGTCCTATCACAAGACCGCTACGGGGCCCGTGGGCTTG
GAAGTGAACCCCAACTCCCGTGACGACTTTATCAAGCAACAAAAGACCTT
GTTGGAGAAGGTCAAGAAATTTCCTGCTGACGCGGAGTATCGCAAGGTGA
TTACGTCCATCGCGACCTATCGTCTGGGAAAAGCCGAGGCCATCACAGAC
CCTGTTGCCTTAGAGAAGGAATTGGACGATGGGCAGTTGGAGGAGATGCT
GGCGCAGGGGGAGGATGAGTTGATGTTGATGGATGATTATGAGGAGAGGA
AATATTGGGAGACGGAGGAGGTCAAGGCGGCTTTTAGGGACTAGATGTCC
TCATTTTTGGTTGCCACCACCCGGCAGTGCTGCCGGCGGGTAAGCATGCT
CCCGACCACCAGGTGGACATCAGCCCCGCTCTCTGTGCAAGCAACAACAG
CAGCGGCGTCCTATCACAAGACCGCTACGGGGCCCGTGGGCTTGGAAGTG
AACCCCAACTCCCGTGACGACTTTATCAAGCAACAAAAGACCTTGTTGGA
GAAGGTCAAGAAATTTCCTGCTGACGCGGAGTATCGCAAGGTGATTACGT
CCATCGCGACCTATCGTCTGGGAAAAGCCGAGGCCATCACAGACCCTGTT
GCCTTAGAGAAGGAATTGGACGATGGGCAGTTGGAGGAGATGCTGGCGCA
GGGGGAGGATGAGTTGATGTTGATGGATGATTATGAGGAGAGGAAATATT
GGGAGACGGAGGAGGTCAAGGCGGCTTTTAGGGACTAG
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Synonyms
Publications