jgi.p|Nanoce1779_2|580063, mRNA_2353 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580063
Unique NamemRNA_2353
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length575
Alignment locationscaffold_5:126307..126881 +

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Properties
Property NameValue
TranscriptId580149
TrackFilteredModels2
ProteinId580063
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:126307..126881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580063gene_2353Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580063mRNA_2353-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2353CDS_2353Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Nanoce1779_2|580063|organism=Nannochloropsis oceanica|type=mRNA|length=575bp
GGGCGCTTTGGTTGTTCGACACATGGAGTCCCTCACCCTGCTGCTGCTGC
TGCTGCTGCTTCCTCTTCCACCCTCCTCCTCCTCCTCCTCTGGCGACGAC
AACCCCTACCGTACCATGGTACTGGTACTGCTGATACTGGTGCTGCCGGC
ATTCATCCTCCCGTTGTGTCTTCCTTTGATTTCCGTCCGGCCCACCGCTC
TCGGGATAGAGCTCATCGAGCGCCCCGTCTACAAGCAAAGTGCCGCGAAA
TTTGTGCAATGCCACGGACACGCCTTGCGTGTTTGTAAGGCAAACGAAAC
AAGGCCTTCATCGAATCTGCAGGTGCTAGGAAATCCACTGCTTCCGTCAT
TTGCCCTTCTTTTCCTCCTCCTCGATGCACCTTGCTCCCCCCGCTGTTGC
TGCTGCTGCTAGTGTTGGGCTCGCGTGGAGAGGACGGCGGCGACCGCAGC
AATATCTCTTGCTCCCCGGCTCGGCCACTCGGCAGCGTACTCAAAACCAG
GGGCAAGGGCAGCATGGGCGTGGCCTCCTCGGTGTTGTTAGCAGGGTGGG
GCGGCGTTGTTTGGACCATAGCTGT
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protein sequence of jgi.p|Nanoce1779_2|580063

>mRNA_2353-protein ID=mRNA_2353-protein|Name=jgi.p|Nanoce1779_2|580063|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MESLTLLLLLLLLPLPPSSSSSSGDDNPYRTMVLVLLILVLPAFILPLCL
PLISVRPTALGIELIERPVYKQSAAKFVQCHGHALRVCKANETRPSSNLQ
VL
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mRNA from alignment at scaffold_5:126307..126881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Nanoce1779_2|580063|organism=Nannochloropsis oceanica|type=mRNA|length=575bp|location=Sequence derived from alignment at scaffold_5:126307..126881+ (Nannochloropsis oceanica)
GGGCGCTTTGGTTGTTCGACACATGGAGTCCCTCACCCTGCTGCTGCTGC
TGCTGCTGCTTCCTCTTCCACCCTCCTCCTCCTCCTCCTCTGGCGACGAC
AACCCCTACCGTACCATGGTACTGGTACTGCTGATACTGGTGCTGCCGGC
ATTCATCCTCCCGTTGTGTCTTCCTTTGATTTCCGTCCGGCCCACCGCTC
TCGGGATAGAGCTCATCGAGCGCCCCGTCTACAAGCAAAGTGCCGCGAAA
TTTGTGCAATGCCACGGACACGCCTTGCGTGTTTGTAAGGCAAACGAAAC
AAGGCCTTCATCGAATCTGCAGGTGCTAGGAAATCCACTGCTTCCGTCAT
TTGCCCTTCTTTTCCTCCTCCTCGATGCACCTTGCTCCCCCCGCTGTTGC
TGCTGCTGCTAGTGTTGGGCTCGCGTGGAGAGGACGGCGGCGACCGCAGC
AATATCTCTTGCTCCCCGGCTCGGCCACTCGGCAGCGTACTCAAAACCAG
GGGCAAGGGCAGCATGGGCGTGGCCTCCTCGGTGTTGTTAGCAGGGTGGG
GCGGCGTTGTTTGGACCATAGCTGT
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Coding sequence (CDS) from alignment at scaffold_5:126307..126881+

>mRNA_2353 ID=mRNA_2353|Name=jgi.p|Nanoce1779_2|580063|organism=Nannochloropsis oceanica|type=CDS|length=307bp|location=Sequence derived from alignment at scaffold_5:126307..126881+ (Nannochloropsis oceanica)
ATGGAGTCCCTCACCCTGCTGCTGCTGCTGCTGCTGCTTCCTCTTCCACC
CTCCTCCTCCTCCTCCTCTGGCGACGACAACCCCTACCGTACCATGGTAC
TGGTACTGCTGATACTGGTGCTGCCGGCATTCATCCTCCCGTTGTGTCTT
CCTTTGATTTCCGTCCGGCCCACCGCTCTCGGGATAGAGCTCATCGAGCG
CCCCGTCTACAAGCAAAGTGCCGCGAAATTTGTGCAATGCCACGGACACG
CCTTGCGTGTTTGTAAGGCAAACGAAACAAGGCCTTCATCGAATCTGCAG
GTGCTAG
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Synonyms
Publications