jgi.p|Nanoce1779_2|580670, mRNA_2526 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580670
Unique Name	mRNA_2526
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2520
Alignment location	scaffold_5:561503..564022 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580756
Track	FilteredModels2
ProteinId	580670

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:561503..564022 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580670	gene_2526	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580670	mRNA_2526-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2526	CDS_2526	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:561503..564022-
coding sequence from alignment at scaffold_5:561503..564022-

mRNA sequence

>mRNA_2526 ID=mRNA_2526|Name=jgi.p|Nanoce1779_2|580670|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp
ACGAGTACGAAACGGCCAGCAGCAGCGAGGATGTCGGCGACGACGACGAC
GACAGCAGCAGTGAAGACGACGAGAGCCGCGGGCGGCACCGCAAGCGGAC
GCGTCTCTCGAGAAAGCCCACTAAGAGGATGGGCCAACGGAAGGGCCTTC
CGTCCCAGGCGGAGATGAAGGAAGCGGAAGAGCAGGACCCTAATTACAAT
GCCCTCGCGTGCCTGGTCCAATTTCTGAGAGGCGCGGATGCGGCGTCGGC
CGAGGTGGTGGAAGAGCATCTGAAGCCCCGGGAGATGATGCGGCCGTTTC
AGGAGGTTCAAATGGCGGCGATCAATGCCAAGGCGGCCAGCATGCCCCCT
AGGGTCGTAAAGCTTAAGGAGGAGCAGCCCAAGCCTTACAAGAAGGTACG
ACGCATGGTGTTCCACGCCTCAATGAAGGGCGAGGTCGATATCTTTAAAG
ATGATTCGAACGATCACCAATGCCAGTGTCTGAGTGTCGAAGAGGCTGCT
GATTTAACCCCCGCGAGTCGGGAGGACCGGGGTGTGTGCTGTAATGAGAT
GTGCTTGAATCGCTCCTTGAACGTGGAATGCAGTGAGGAGACCTGCCGGT
TTGCGGCTACGGGAGAATGTAGAAATCAAAGGATTGGACGTAAGCTGCAG
GCACCATTTCGAGTATTTCGTACGGAAGGTCGTGGGTGGGGGTTGATGGC
GGTTGAGGATGTGGAGGTTGGTACGTTTGTGAGTGAGTATGTAGGGGAGG
TGATAGACGATGAGGAGGTGGCGCGCCGGTTGTGGTTGGCCAAGGAGGAG
GAAGGAGCGGGAGCAGACTTCTATATGGTGGAAGCAATGGGTGCTACGGT
GGATGCGCGGTTTTTTGGGAATGAGAGTAGATTTTTGAATCATTCATGTG
ATCCTAATTGCCGGTTAGAGAAGTGGAACGTTGGGGGATGTTATCGGCTG
GGCATTTTTGCGATTAAGCCCATTCCCGCGGGCGCGGAGTATTGTTGGGA
TTATCAGTTCTGTAACTTCGAGGGGAGCAAGCCGAAGGCCTGTCGATGTG
GTGCGGTGACGTGTCGGAAGGTCCTGGCGGGAAAGGCTTATCGGGACGAG
GCCGCGGCGCAAGCGCAGGTGCAGGTGCCTGTGTCGGTGCGTGTGGAGAA
GCTTCAGCGGGCCGTTCAGGAGATGGAAGCATTCCGGGCGATGCTTAAAG
AGAAGCCCTTGTATGATCTGGATCCTCTGGTGCTGTTTTTCAATGGAAGG
ACTGCGCCGGAGGAGATTGAACAAGCGCAGCGGGCGCGGTTATGGCTTTC
CCGGGACGGGCCGGGCGTGTCGGCCAGGGAGAAGGAAAGGATGGAGCGAA
TGCAGCGGAAAGCAGTGGCTGCAGGAAAGTTTTTGCAGGGCAATACGGAT
GCTTGGCCGGCGACGGCCAGTGTCGCCCCGGTTACCACGATGACCATGGT
AATCAACCCTACCACAACAATCAGTGGCACCACCGCCACCAATAGTCAGC
TGCTACGCAACCAGGCCTTGCAATCACGGCTCGATGCCATGCTGGCCACC
GCGGCCAAGGAGTTAAAGACGCATGAAACGAAGCGTGCGGAAGCAGCAGC
AGTGGTGACAGCGGCGACGACCAGGAAGGGTGGGAAGAAGATGGGGGCCA
CCGGAAAGAATGCCGCAAGGCCGCAGGCGGAGGAGAGGCAAATTTTGCAG
CGTCGCGTCCAGGCCAAGATACTAGATGAGTTGACGGAGCTAGCAGAGCA
GCGGGGGATGAAGGCTTCGACGTCCACGACTAGCCGTCGGTACAGCCCGC
GGCGCTTGGGACTGTTGTCATTGCGTGAGAAGAGGTGGCACGAGGCGACC
TTATTGCCATTTGCGGAAAAATTAGTCGGGGAAGCACGAATGCAGGGCTG
GCATGAGAGTCGATGGCAAGCGGTGAGTGATATGATTGTGTTTATGAAGC
AGAGCGAAAGTAAGGGCTTGTGGGGGGACATGAGCGAGGACATTTGCTAT
TCCTGTGGATGTTCTGGTGATCTGGTCTGCTGTGATGCTTGCACCAGTGC
TTATCATGTAAGCTGTGCAGGCTTGTACGAAGTTCCCGATGAGAGCCAGT
GGTTCTGCACACGCTGTAAGCGGAAGACGGGAGGTGGAAGTCGGAGGCAG
CGATAGCGGGGTTAGGTCAGAAAGGGAAAATAGACGCTGTGCTCTGGAGG
TTGAGCAAGAATACTGAGGTGCGTTACCAACGTTGAAAAAGAAGAAAGTA
GTAAATATGAAGTAACAGCATAGTAGATAGACATTGAGGATAGGTATCGC
CAGCTGTGAAAATGGTTTGAGTGAGGGACTAAGGAAGAGCGGAATATTGG
ACAAGAAAATATTGCCTCCAGAGCTCAAGAGAGAGAAGTAACTACACAAC
ACGGGAATATGGAAGGGTTGTTACAGAATGCATACGATAGTGCGTGTTGA
AGTAAGTGCCCCTGAGGAGCTGCTGGGATTAAAGACAAAGAAAAATCGCA
ATTCAATAAATAAAAACAAA

protein sequence of jgi.p|Nanoce1779_2|580670

>mRNA_2526-protein ID=mRNA_2526-protein|Name=jgi.p|Nanoce1779_2|580670|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp
MGQRKGLPSQAEMKEAEEQDPNYNALACLVQFLRGADAASAEVVEEHLKP
REMMRPFQEVQMAAINAKAASMPPRVVKLKEEQPKPYKKVRRMVFHASMK
GEVDIFKDDSNDHQCQCLSVEEAADLTPASREDRGVCCNEMCLNRSLNVE
CSEETCRFAATGECRNQRIGRKLQAPFRVFRTEGRGWGLMAVEDVEVGTF
VSEYVGEVIDDEEVARRLWLAKEEEGAGADFYMVEAMGATVDARFFGNES
RFLNHSCDPNCRLEKWNVGGCYRLGIFAIKPIPAGAEYCWDYQFCNFEGS
KPKACRCGAVTCRKVLAGKAYRDEAAAQAQVQVPVSVRVEKLQRAVQEME
AFRAMLKEKPLYDLDPLVLFFNGRTAPEEIEQAQRARLWLSRDGPGVSAR
EKERMERMQRKAVAAGKFLQGNTDAWPATASVAPVTTMTMVINPTTTISG
TTATNSQLLRNQALQSRLDAMLATAAKELKTHETKRAEAAAVVTAATTRK
GGKKMGATGKNAARPQAEERQILQRRVQAKILDELTELAEQRGMKASTST
TSRRYSPRRLGLLSLREKRWHEATLLPFAEKLVGEARMQGWHESRWQAVS
DMIVFMKQSESKGLWGDMSEDICYSCGCSGDLVCCDACTSAYHVSCAGLY
EVPDESQWFCTRCKRKTGGGSRRQR*

mRNA from alignment at scaffold_5:561503..564022-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2526 ID=mRNA_2526|Name=jgi.p|Nanoce1779_2|580670|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp|location=Sequence derived from alignment at scaffold_5:561503..564022- (Nannochloropsis oceanica)
ACGAGTACGAAACGGCCAGCAGCAGCGAGGATGTCGGCGACGACGACGAC
GACAGCAGCAGTGAAGACGACGAGAGCCGCGGGCGGCACCGCAAGCGGAC
GCGTCTCTCGAGAAAGCCCACTAAGAGGATGGGCCAACGGAAGGGCCTTC
CGTCCCAGGCGGAGATGAAGGAAGCGGAAGAGCAGGACCCTAATTACAAT
GCCCTCGCGTGCCTGGTCCAATTTCTGAGAGGCGCGGATGCGGCGTCGGC
CGAGGTGGTGGAAGAGCATCTGAAGCCCCGGGAGATGATGCGGCCGTTTC
AGGAGGTTCAAATGGCGGCGATCAATGCCAAGGCGGCCAGCATGCCCCCT
AGGGTCGTAAAGCTTAAGGAGGAGCAGCCCAAGCCTTACAAGAAGGTACG
ACGCATGGTGTTCCACGCCTCAATGAAGGGCGAGGTCGATATCTTTAAAG
ATGATTCGAACGATCACCAATGCCAGTGTCTGAGTGTCGAAGAGGCTGCT
GATTTAACCCCCGCGAGTCGGGAGGACCGGGGTGTGTGCTGTAATGAGAT
GTGCTTGAATCGCTCCTTGAACGTGGAATGCAGTGAGGAGACCTGCCGGT
TTGCGGCTACGGGAGAATGTAGAAATCAAAGGATTGGACGTAAGCTGCAG
GCACCATTTCGAGTATTTCGTACGGAAGGTCGTGGGTGGGGGTTGATGGC
GGTTGAGGATGTGGAGGTTGGTACGTTTGTGAGTGAGTATGTAGGGGAGG
TGATAGACGATGAGGAGGTGGCGCGCCGGTTGTGGTTGGCCAAGGAGGAG
GAAGGAGCGGGAGCAGACTTCTATATGGTGGAAGCAATGGGTGCTACGGT
GGATGCGCGGTTTTTTGGGAATGAGAGTAGATTTTTGAATCATTCATGTG
ATCCTAATTGCCGGTTAGAGAAGTGGAACGTTGGGGGATGTTATCGGCTG
GGCATTTTTGCGATTAAGCCCATTCCCGCGGGCGCGGAGTATTGTTGGGA
TTATCAGTTCTGTAACTTCGAGGGGAGCAAGCCGAAGGCCTGTCGATGTG
GTGCGGTGACGTGTCGGAAGGTCCTGGCGGGAAAGGCTTATCGGGACGAG
GCCGCGGCGCAAGCGCAGGTGCAGGTGCCTGTGTCGGTGCGTGTGGAGAA
GCTTCAGCGGGCCGTTCAGGAGATGGAAGCATTCCGGGCGATGCTTAAAG
AGAAGCCCTTGTATGATCTGGATCCTCTGGTGCTGTTTTTCAATGGAAGG
ACTGCGCCGGAGGAGATTGAACAAGCGCAGCGGGCGCGGTTATGGCTTTC
CCGGGACGGGCCGGGCGTGTCGGCCAGGGAGAAGGAAAGGATGGAGCGAA
TGCAGCGGAAAGCAGTGGCTGCAGGAAAGTTTTTGCAGGGCAATACGGAT
GCTTGGCCGGCGACGGCCAGTGTCGCCCCGGTTACCACGATGACCATGGT
AATCAACCCTACCACAACAATCAGTGGCACCACCGCCACCAATAGTCAGC
TGCTACGCAACCAGGCCTTGCAATCACGGCTCGATGCCATGCTGGCCACC
GCGGCCAAGGAGTTAAAGACGCATGAAACGAAGCGTGCGGAAGCAGCAGC
AGTGGTGACAGCGGCGACGACCAGGAAGGGTGGGAAGAAGATGGGGGCCA
CCGGAAAGAATGCCGCAAGGCCGCAGGCGGAGGAGAGGCAAATTTTGCAG
CGTCGCGTCCAGGCCAAGATACTAGATGAGTTGACGGAGCTAGCAGAGCA
GCGGGGGATGAAGGCTTCGACGTCCACGACTAGCCGTCGGTACAGCCCGC
GGCGCTTGGGACTGTTGTCATTGCGTGAGAAGAGGTGGCACGAGGCGACC
TTATTGCCATTTGCGGAAAAATTAGTCGGGGAAGCACGAATGCAGGGCTG
GCATGAGAGTCGATGGCAAGCGGTGAGTGATATGATTGTGTTTATGAAGC
AGAGCGAAAGTAAGGGCTTGTGGGGGGACATGAGCGAGGACATTTGCTAT
TCCTGTGGATGTTCTGGTGATCTGGTCTGCTGTGATGCTTGCACCAGTGC
TTATCATGTAAGCTGTGCAGGCTTGTACGAAGTTCCCGATGAGAGCCAGT
GGTTCTGCACACGCTGTAAGCGGAAGACGGGAGGTGGAAGTCGGAGGCAG
CGATAGCGGGGTTAGGTCAGAAAGGGAAAATAGACGCTGTGCTCTGGAGG
TTGAGCAAGAATACTGAGGTGCGTTACCAACGTTGAAAAAGAAGAAAGTA
GTAAATATGAAGTAACAGCATAGTAGATAGACATTGAGGATAGGTATCGC
CAGCTGTGAAAATGGTTTGAGTGAGGGACTAAGGAAGAGCGGAATATTGG
ACAAGAAAATATTGCCTCCAGAGCTCAAGAGAGAGAAGTAACTACACAAC
ACGGGAATATGGAAGGGTTGTTACAGAATGCATACGATAGTGCGTGTTGA
AGTAAGTGCCCCTGAGGAGCTGCTGGGATTAAAGACAAAGAAAAATCGCA
ATTCAATAAATAAAAACAAA

Coding sequence (CDS) from alignment at scaffold_5:561503..564022-

>mRNA_2526 ID=mRNA_2526|Name=jgi.p|Nanoce1779_2|580670|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_5:561503..564022- (Nannochloropsis oceanica)
ATGGGCCAACGGAAGGGCCTTCCGTCCCAGGCGGAGATGAAGGAAGCGGA
AGAGCAGGACCCTAATTACAATGCCCTCGCGTGCCTGGTCCAATTTCTGA
GAGGCGCGGATGCGGCGTCGGCCGAGGTGGTGGAAGAGCATCTGAAGCCC
CGGGAGATGATGCGGCCGTTTCAGGAGGTTCAAATGGCGGCGATCAATGC
CAAGGCGGCCAGCATGCCCCCTAGGGTCGTAAAGCTTAAGGAGGAGCAGC
CCAAGCCTTACAAGAAGGTACGACGCATGGTGTTCCACGCCTCAATGAAG
GGCGAGGTCGATATCTTTAAAGATGATTCGAACGATCACCAATGCCAGTG
TCTGAGTGTCGAAGAGGCTGCTGATTTAACCCCCGCGAGTCGGGAGGACC
GGGGTGTGTGCTGTAATGAGATGTGCTTGAATCGCTCCTTGAACGTGGAA
TGCAGTGAGGAGACCTGCCGGTTTGCGGCTACGGGAGAATGTAGAAATCA
AAGGATTGGACGTAAGCTGCAGGCACCATTTCGAGTATTTCGTACGGAAG
GTCGTGGGTGGGGGTTGATGGCGGTTGAGGATGTGGAGGTTGGTACGTTT
GTGAGTGAGTATGTAGGGGAGGTGATAGACGATGAGGAGGTGGCGCGCCG
GTTGTGGTTGGCCAAGGAGGAGGAAGGAGCGGGAGCAGACTTCTATATGG
TGGAAGCAATGGGTGCTACGGTGGATGCGCGGTTTTTTGGGAATGAGAGT
AGATTTTTGAATCATTCATGTGATCCTAATTGCCGGTTAGAGAAGTGGAA
CGTTGGGGGATGTTATCGGCTGGGCATTTTTGCGATTAAGCCCATTCCCG
CGGGCGCGGAGTATTGTTGGGATTATCAGTTCTGTAACTTCGAGGGGAGC
AAGCCGAAGGCCTGTCGATGTGGTGCGGTGACGTGTCGGAAGGTCCTGGC
GGGAAAGGCTTATCGGGACGAGGCCGCGGCGCAAGCGCAGGTGCAGGTGC
CTGTGTCGGTGCGTGTGGAGAAGCTTCAGCGGGCCGTTCAGGAGATGGAA
GCATTCCGGGCGATGCTTAAAGAGAAGCCCTTGTATGATCTGGATCCTCT
GGTGCTGTTTTTCAATGGAAGGACTGCGCCGGAGGAGATTGAACAAGCGC
AGCGGGCGCGGTTATGGCTTTCCCGGGACGGGCCGGGCGTGTCGGCCAGG
GAGAAGGAAAGGATGGAGCGAATGCAGCGGAAAGCAGTGGCTGCAGGAAA
GTTTTTGCAGGGCAATACGGATGCTTGGCCGGCGACGGCCAGTGTCGCCC
CGGTTACCACGATGACCATGGTAATCAACCCTACCACAACAATCAGTGGC
ACCACCGCCACCAATAGTCAGCTGCTACGCAACCAGGCCTTGCAATCACG
GCTCGATGCCATGCTGGCCACCGCGGCCAAGGAGTTAAAGACGCATGAAA
CGAAGCGTGCGGAAGCAGCAGCAGTGGTGACAGCGGCGACGACCAGGAAG
GGTGGGAAGAAGATGGGGGCCACCGGAAAGAATGCCGCAAGGCCGCAGGC
GGAGGAGAGGCAAATTTTGCAGCGTCGCGTCCAGGCCAAGATACTAGATG
AGTTGACGGAGCTAGCAGAGCAGCGGGGGATGAAGGCTTCGACGTCCACG
ACTAGCCGTCGGTACAGCCCGCGGCGCTTGGGACTGTTGTCATTGCGTGA
GAAGAGGTGGCACGAGGCGACCTTATTGCCATTTGCGGAAAAATTAGTCG
GGGAAGCACGAATGCAGGGCTGGCATGAGAGTCGATGGCAAGCGGTGAGT
GATATGATTGTGTTTATGAAGCAGAGCGAAAGTAAGGGCTTGTGGGGGGA
CATGAGCGAGGACATTTGCTATTCCTGTGGATGTTCTGGTGATCTGGTCT
GCTGTGATGCTTGCACCAGTGCTTATCATGTAAGCTGTGCAGGCTTGTAC
GAAGTTCCCGATGAGAGCCAGTGGTTCTGCACACGCTGTAAGCGGAAGAC
GGGAGGTGGAAGTCGGAGGCAGCGATAG

Synonyms

Publications