jgi.p|Nanoce1779_2|581428, mRNA_2761 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581428
Unique Name	mRNA_2761
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2727
Alignment location	scaffold_5:1119834..1122862 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581514
Track	FilteredModels2
ProteinId	581428

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1119834..1122862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581428	gene_2761	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581428	mRNA_2761-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2761	CDS_2761	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1119834..1122862+
coding sequence from alignment at scaffold_5:1119834..1122862+

mRNA sequence

>mRNA_2761 ID=mRNA_2761|Name=jgi.p|Nanoce1779_2|581428|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp
ACAGAGCGGGCCCCAACGATGATGATGGTGCGCATCAAGGCGGCAGGATC
ATTCCTGTCCGTGGCGTGGCTGGCGGGGACTATGGCCGCTCAGGCGGCAG
ATCCCATGTCCTGCTCCAACTCCCACTTCCTTGCCTTGGTCGTGCCCGAG
GGCAGCTCCGTCGACGTCCTGCGCATCCCCACGCCCGCAACGCACATTGC
GTCCAACAAAGCCCCTGAAATCTCCGCGGCAGAACTGGAAGAAGTGCACC
ACCGCGTGCTGGGCCACCCGGCGCATGCCTACAAACAAGCCTTGCCTTCT
CTGGACGTCTTTGCGTCGCACGGCGCAGGCGCGGTGTTTGTTGCTCTATT
AGATGGCGTGGAGACGACAACAAGCTACGTCCAAGGGCTGCAGGCGGCTC
GAGGCTTGTATCAGGCGCGCGTGGGAGGGTAAGTGAAGAAGGAAGGAGGA
GGGAAGGAGAGAGGTAAGAGCAGCCCGGCAGACGTGAGGAGACAGGCAGG
ACGTACATGTAGACCTTTGTCATCTACACATCCCTTGTGATTCATTTTTC
CCCTCACCTTTCCTGTACAGTCTTAAGGACCTGCATGCTGTAGCTAAACG
CTACGCGGGCAATGCCACCTCCTCCTCCGCGTCTTCCTCCTCGTCCTCCT
CCTCTTTCGTCGCCTGCATCGCTTGCGACCCAGCCACGCGTGACTTGCCC
GTTTGCCAGCAGCAGCAGCAGCAGCAGGAAGTGGTGGCAATTGATCCGCT
GTCGCAAAAGATTGATCTGTCCTTCATCGAGAAGGAGATGGAGGCGGTGG
CCTCGGCGACCGAGATTGGTAACACGTTCAACGTCCACGGAGCGGCTGAT
CGCCGTTTCCTCTCCGAGCTCCAGGCCCTGCTTAAGCTCGTCACCCTCCT
TCCCTCCACCCCTTCCCCCCCCTCGTCCTCCCCTGACTTCATCCTTTTCG
CGGCTGATGGATTGCGGACCCTGCAGCTCACGTACGGCCCTTCCTCCCCC
CCCTCGTCTCTGGCGAAGAGGATGATGGACGTGGCCATGGCCAAGACCAA
TCAGGTGTTGGGGGTGAAATACGGGGAGAAAGGTGGCGTGATCTCTGAAG
TCTTGTTGAGGCAGACGGTGAGGAAGGGAAGGGGAAATGGGAGGGAATGA
TAATGCTCACTTTAACATGCAACAACGTGGAAAGGTAGATTGATGGACAG
GACAGATGGCAGATGGATAGATAGATAGATAGATAGATGTGTAATCTACT
CTCTCTCTACTTCTCTTTGGATGCACTCATATCTCTGACTGCCTCTCTAT
CTCATTTTATACAGATGCATTCATGTAACTGTCTGCATCCATCTCTCAAT
CTCTATCTCTATCTCTATCTCTATCTTTTCTCGTGTATCTGTCTGCATTT
CTCACCGTATATAATTCATTGAAAACCACAGGGAGCCGTAACAGAGCCGA
TTGCCCCGAGAAGACGCCTGCAGGACGGGGACTCTGATAGCACACCCCTC
ACCGAGGAGGACATTTTTAATGTACGTCCATTGGCTTAACTCCCCTTCGG
AGAAGGGGAAGGAAGGGTGAAGACACCTTCTCTGTTTGCATGGGTCGTGG
AGTCTTACCCGTGAACGTTTTGAGCAGTCTTTGTCTTACCCCTCCTCCCT
TCCCTCTCTTTCTCCCTCCCTAGGTAAACATCCTGACCTGGACCACCGTG
GGCCTCATTCTCGTCCTGCTGCTGTCGCTCTGTCTCCTTTATGGTGCGGA
TTCGGGCCCCAGGGATTCCTTGTTGTACGCGAAGTTCTTGGCAGACACCT
CGGGAGGGAAGATGGATTAAGGCGACAGGAGTAAAATGCTTCAAGGAAAA
TGAACGTGGGAAATGGTTTGTGTGTTTGGTATGAAGGGAGGGACGGGGAG
GAAGGGAGGAGAGTGTAAAGAGGTGCGATGATGGCAGAGGAGGACCGTAC
GAATACATACGGAAATACAAGAGTCAAAGAAAAAACAAGAAAGGCGCTCA
TGATGCCTGTGTTGGTTATGCTCACGTGCTTGCTTACGGTGTTGCTTGTC
AACCTCCCCGCTCTTTCTTCCTTTCTTCACAATCAGACGCAGATCCCCCA
CTTCCTACGCACACAGGGCCGGCAGAGAGCATGGAAGAACCATTACAACA
AGGAGACCCACAGCGGCGGAAGCATATCACAAAACGGCCCGCGGAAGGGC
CGTTTTGCGGGGATAGGCCTGCCTCCTGTACCTACTCTAATTATCCGCAA
TTGCAGCCCCAACAGCATCCGCAGCAGCATGAGAGGGATGACGAGGAAGA
GGAACAGCGTAAGCGGGTCCGTGGCAGTGCTGCTATTGGTACTCTCACAA
CGAGCGGCAGCACAAGCATCCTCATAGTCCTCGACAGTGACGAGGAGGTG
GCGGACGAGGAGCGTCTAGGGGAAGAGAGGATAGCACGAACGCAATCGGC
AACAACAAATAATGCACCAGTTTCACCGTTGCTGCCGATACCACCCTGTC
TACCCAGATCTTCTCATTGCCATCACCCCCGTCTTCACGCCCTCCTTGCC
TCCCTTTCCTCCTCCTCATCCACCTCTTTCGAACTCCCTTCCCTCATCAT
CGTCGACTTGGACTACACTCTTTGGAAAGGCAACATTTCGGATCAACTTC
CTCCCTTTGCCGCAACCAACCATCCCGACCACGTGCACGTTGGCGGCGTC
TTCAGTAGTGGCGGTTGGGGAGGAGGG

protein sequence of jgi.p|Nanoce1779_2|581428

>mRNA_2761-protein ID=mRNA_2761-protein|Name=jgi.p|Nanoce1779_2|581428|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MMAEEDRTNTYGNTRVKEKTRKALMMPVLVMLTCLLTVLLVNLPALSSFL
HNQTQIPHFLRTQGRQRAWKNHYNKETHSGGSISQNGPRKGRFAGIGLPP
VPTLIIRNCSPNSIRSSMRGMTRKRNSVSGSVAVLLLVLSQRAAAQASS*

mRNA from alignment at scaffold_5:1119834..1122862+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2761 ID=mRNA_2761|Name=jgi.p|Nanoce1779_2|581428|organism=Nannochloropsis oceanica|type=mRNA|length=3029bp|location=Sequence derived from alignment at scaffold_5:1119834..1122862+ (Nannochloropsis oceanica)
ACAGAGCGGGCCCCAACGATGATGATGGTGCGCATCAAGGCGGCAGGATC
ATTCCTGTCCGTGGCGTGGCTGGCGGGGACTATGGCCGCTCAGGCGGCAG
ATCCCATGTCCTGCTCCAACTCCCACTTCCTTGCCTTGGTCGTGCCCGAG
GGCAGCTCCGTCGACGTCCTGCGCATCCCCACGGTACGTCTGCAGGTGCT
ATTTTGGTGGAAAGTGGTAGTCTTTTTGGTCCGGGCCTTATCTTTTGATC
TCGTCATCTCCGTCCGCCGTCACTCGTCCTCATCGCATCTCCGCACCGTT
CTCCTCCGTCTCCTTCCGCTTCCTCCCCCCTCATGCACAGCCCGCAACGC
ACATTGCGTCCAACAAAGCCCCTGAAATCTCCGCGGCAGAACTGGAAGAA
GTGCACCACCGCGTGCTGGGCCACCCGGCGCATGCCTACAAACAAGCCTT
GCCTTCTCTGGACGTCTTTGCGTCGCACGGCGCAGGCGCGGTGTTTGTTG
CTCTATTAGATGGCGTGGAGACGACAACAAGCTACGTCCAAGGGCTGCAG
GCGGCTCGAGGCTTGTATCAGGCGCGCGTGGGAGGGTAAGTGAAGAAGGA
AGGAGGAGGGAAGGAGAGAGGTAAGAGCAGCCCGGCAGACGTGAGGAGAC
AGGCAGGACGTACATGTAGACCTTTGTCATCTACACATCCCTTGTGATTC
ATTTTTCCCCTCACCTTTCCTGTACAGTCTTAAGGACCTGCATGCTGTAG
CTAAACGCTACGCGGGCAATGCCACCTCCTCCTCCGCGTCTTCCTCCTCG
TCCTCCTCCTCTTTCGTCGCCTGCATCGCTTGCGACCCAGCCACGCGTGA
CTTGCCCGTTTGCCAGCAGCAGCAGCAGCAGCAGGAAGTGGTGGCAATTG
ATCCGCTGTCGCAAAAGATTGATCTGTCCTTCATCGAGAAGGAGATGGAG
GCGGTGGCCTCGGCGACCGAGATTGGTAACACGTTCAACGTCCACGGAGC
GGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGCGTGGATTACCG
CATTGTCTCTTCTGATGATCGTTGGTTGTCATGACGCTATTATGTTCTCT
CTCTCATTTTCCCTCATTCCTTCTACCTTCCCCCCCTCCCTCGCAGGCTG
ATCGCCGTTTCCTCTCCGAGCTCCAGGCCCTGCTTAAGCTCGTCACCCTC
CTTCCCTCCACCCCTTCCCCCCCCTCGTCCTCCCCTGACTTCATCCTTTT
CGCGGCTGATGGATTGCGGACCCTGCAGCTCACGTACGGCCCTTCCTCCC
CCCCCTCGTCTCTGGCGAAGAGGATGATGGACGTGGCCATGGCCAAGACC
AATCAGGTGTTGGGGGTGAAATACGGGGAGAAAGGTGGCGTGATCTCTGA
AGTCTTGTTGAGGCAGACGGTGAGGAAGGGAAGGGGAAATGGGAGGGAAT
GATAATGCTCACTTTAACATGCAACAACGTGGAAAGGTAGATTGATGGAC
AGGACAGATGGCAGATGGATAGATAGATAGATAGATAGATGTGTAATCTA
CTCTCTCTCTACTTCTCTTTGGATGCACTCATATCTCTGACTGCCTCTCT
ATCTCATTTTATACAGATGCATTCATGTAACTGTCTGCATCCATCTCTCA
ATCTCTATCTCTATCTCTATCTCTATCTTTTCTCGTGTATCTGTCTGCAT
TTCTCACCGTATATAATTCATTGAAAACCACAGGGAGCCGTAACAGAGCC
GATTGCCCCGAGAAGACGCCTGCAGGACGGGGACTCTGATAGCACACCCC
TCACCGAGGAGGACATTTTTAATGTACGTCCATTGGCTTAACTCCCCTTC
GGAGAAGGGGAAGGAAGGGTGAAGACACCTTCTCTGTTTGCATGGGTCGT
GGAGTCTTACCCGTGAACGTTTTGAGCAGTCTTTGTCTTACCCCTCCTCC
CTTCCCTCTCTTTCTCCCTCCCTAGGTAAACATCCTGACCTGGACCACCG
TGGGCCTCATTCTCGTCCTGCTGCTGTCGCTCTGTCTCCTTTATGGTGCG
GATTCGGGCCCCAGGGATTCCTTGTTGTACGCGAAGTTCTTGGCAGACAC
CTCGGGAGGGAAGATGGATTAAGGCGACAGGAGTAAAATGCTTCAAGGAA
AATGAACGTGGGAAATGGTTTGTGTGTTTGGTATGAAGGGAGGGACGGGG
AGGAAGGGAGGAGAGTGTAAAGAGGTGCGATGATGGCAGAGGAGGACCGT
ACGAATACATACGGAAATACAAGAGTCAAAGAAAAAACAAGAAAGGCGCT
CATGATGCCTGTGTTGGTTATGCTCACGTGCTTGCTTACGGTGTTGCTTG
TCAACCTCCCCGCTCTTTCTTCCTTTCTTCACAATCAGACGCAGATCCCC
CACTTCCTACGCACACAGGGCCGGCAGAGAGCATGGAAGAACCATTACAA
CAAGGAGACCCACAGCGGCGGAAGCATATCACAAAACGGCCCGCGGAAGG
GCCGTTTTGCGGGGATAGGCCTGCCTCCTGTACCTACTCTAATTATCCGC
AATTGCAGCCCCAACAGCATCCGCAGCAGCATGAGAGGGATGACGAGGAA
GAGGAACAGCGTAAGCGGGTCCGTGGCAGTGCTGCTATTGGTACTCTCAC
AACGAGCGGCAGCACAAGCATCCTCATAGTCCTCGACAGTGACGAGGAGG
TGGCGGACGAGGAGCGTCTAGGGGAAGAGAGGATAGCACGAACGCAATCG
GCAACAACAAATAATGCACCAGTTTCACCGTTGCTGCCGATACCACCCTG
TCTACCCAGATCTTCTCATTGCCATCACCCCCGTCTTCACGCCCTCCTTG
CCTCCCTTTCCTCCTCCTCATCCACCTCTTTCGAACTCCCTTCCCTCATC
ATCGTCGACTTGGACTACACTCTTTGGAAAGGCAACATTTCGGATCAACT
TCCTCCCTTTGCCGCAACCAACCATCCCGACCACGTGCACGTTGGCGGCG
TCTTCAGTAGTGGCGGTTGGGGAGGAGGG

Coding sequence (CDS) from alignment at scaffold_5:1119834..1122862+

>mRNA_2761 ID=mRNA_2761|Name=jgi.p|Nanoce1779_2|581428|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_5:1119834..1122862+ (Nannochloropsis oceanica)
ATGATGGCAGAGGAGGACCGTACGAATACATACGGAAATACAAGAGTCAA
AGAAAAAACAAGAAAGGCGCTCATGATGCCTGTGTTGGTTATGCTCACGT
GCTTGCTTACGGTGTTGCTTGTCAACCTCCCCGCTCTTTCTTCCTTTCTT
CACAATCAGACGCAGATCCCCCACTTCCTACGCACACAGGGCCGGCAGAG
AGCATGGAAGAACCATTACAACAAGGAGACCCACAGCGGCGGAAGCATAT
CACAAAACGGCCCGCGGAAGGGCCGTTTTGCGGGGATAGGCCTGCCTCCT
GTACCTACTCTAATTATCCGCAATTGCAGCCCCAACAGCATCCGCAGCAG
CATGAGAGGGATGACGAGGAAGAGGAACAGCGTAAGCGGGTCCGTGGCAG
TGCTGCTATTGGTACTCTCACAACGAGCGGCAGCACAAGCATCCTCATAG

Synonyms

Publications