jgi.p|Nanoce1779_2|581711, mRNA_2818 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581711
Unique NamemRNA_2818
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_5:1277070..1277882 +

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Properties
Property NameValue
TranscriptId581797
TrackFilteredModels2
ProteinId581711
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1277070..1277882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581711gene_2818Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581711mRNA_2818-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2818CDS_2818Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2818 ID=mRNA_2818|Name=jgi.p|Nanoce1779_2|581711|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
GGGGAACGAGAGTATGGAGGACGAGGACCATGAGGACGAGGACGATGAGA
AGAGAAAGAAGAAGAAGGAGGAGGAGGGCGAGGAGGAGGAGGGGGAAAAG
GCGAAGGAGGAACAAGAGGAGGGGAGCGGGGGGGACATGGAGGCAAGAAA
TAGAGCGACAGGTGCCTGTGATCGCGCTATGGACTGCGAATGTCATATTC
ATCCTCAGAGCAGCAACAGCAGTATCGACCTTAGCGACCATAATAGCAGT
AATTAGCGTGAAGGAGGAGAAAAAAGGCAGCTTGAGGAACCTTCTAGGCG
TCATGCCGTGCCTGGACGATGAGGAAAGCGTGGTCTCACGCAAAAGGCCA
GTGCAGGGTAAGCCAAACATTACGTCCATGGCAGACAAGGATGCCCACTT
ATTTGTCAAGGATGGCCACGGGAGAGAGCATCACTTCTCTTGCCTGCCAT
CGACATCCTGTCTGATCGGCCCTGCCCTGGCACACTTGCCCTCGCCCTTA
CATGGGTCGTGCCATACTCAGGAGCCTACATGCACGGGCCTACCCCCGGC
ATCCTTTCACCATCAAGGGCAGCAGGGCCAGGGGTCCAAAGAATCGTTCT
CCATCAATAAAAATCATTCAGTCAGAATGAGCCATAAAGAAGGGCCGCTG
CTGTCAAATGCCTTGAGCTTGTCCAATTCCTGATCTTGTCCCGTCAAAAT
CATGTGCCCGCGCTTCCATAGGGGAAAGGTAAAAGAGAGGAAGAAAGCAA
GGAAAGCAAAGTCTGTGGAAAGGAACAGTAATAAAAGAAATTATAATGGG
CCGTAAGCCACAC
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protein sequence of jgi.p|Nanoce1779_2|581711

>mRNA_2818-protein ID=mRNA_2818-protein|Name=jgi.p|Nanoce1779_2|581711|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MRTRTMRRERRRRRRRARRRRGKRRRRNKRRGAGGTWRQEIERQVPVIAL
WTANVIFILRAATAVSTLATIIAVISVKEEKKGSLRNLLGVMPCLDDEES
VVSRKRPVQGKPNITSMADKDAHLFVKDGHGREHHFSCLPSTSCLIGPAL
AHLPSPLHGSCHTQEPTCTGLPPASFHHQGQQGQGSKESFSINKNHSVRM
SHKEGPLLSNALSLSNS*
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mRNA from alignment at scaffold_5:1277070..1277882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2818 ID=mRNA_2818|Name=jgi.p|Nanoce1779_2|581711|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at scaffold_5:1277070..1277882+ (Nannochloropsis oceanica)
GGGGAACGAGAGTATGGAGGACGAGGACCATGAGGACGAGGACGATGAGA
AGAGAAAGAAGAAGAAGGAGGAGGAGGGCGAGGAGGAGGAGGGGGAAAAG
GCGAAGGAGGAACAAGAGGAGGGGAGCGGGGGGGACATGGAGGCAAGAAA
TAGAGCGACAGGTGCCTGTGATCGCGCTATGGACTGCGAATGTCATATTC
ATCCTCAGAGCAGCAACAGCAGTATCGACCTTAGCGACCATAATAGCAGT
AATTAGCGTGAAGGAGGAGAAAAAAGGCAGCTTGAGGAACCTTCTAGGCG
TCATGCCGTGCCTGGACGATGAGGAAAGCGTGGTCTCACGCAAAAGGCCA
GTGCAGGGTAAGCCAAACATTACGTCCATGGCAGACAAGGATGCCCACTT
ATTTGTCAAGGATGGCCACGGGAGAGAGCATCACTTCTCTTGCCTGCCAT
CGACATCCTGTCTGATCGGCCCTGCCCTGGCACACTTGCCCTCGCCCTTA
CATGGGTCGTGCCATACTCAGGAGCCTACATGCACGGGCCTACCCCCGGC
ATCCTTTCACCATCAAGGGCAGCAGGGCCAGGGGTCCAAAGAATCGTTCT
CCATCAATAAAAATCATTCAGTCAGAATGAGCCATAAAGAAGGGCCGCTG
CTGTCAAATGCCTTGAGCTTGTCCAATTCCTGATCTTGTCCCGTCAAAAT
CATGTGCCCGCGCTTCCATAGGGGAAAGGTAAAAGAGAGGAAGAAAGCAA
GGAAAGCAAAGTCTGTGGAAAGGAACAGTAATAAAAGAAATTATAATGGG
CCGTAAGCCACAC
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Coding sequence (CDS) from alignment at scaffold_5:1277070..1277882+

>mRNA_2818 ID=mRNA_2818|Name=jgi.p|Nanoce1779_2|581711|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_5:1277070..1277882+ (Nannochloropsis oceanica)
ATGAGGACGAGGACGATGAGAAGAGAAAGAAGAAGAAGGAGGAGGAGGGC
GAGGAGGAGGAGGGGGAAAAGGCGAAGGAGGAACAAGAGGAGGGGAGCGG
GGGGGACATGGAGGCAAGAAATAGAGCGACAGGTGCCTGTGATCGCGCTA
TGGACTGCGAATGTCATATTCATCCTCAGAGCAGCAACAGCAGTATCGAC
CTTAGCGACCATAATAGCAGTAATTAGCGTGAAGGAGGAGAAAAAAGGCA
GCTTGAGGAACCTTCTAGGCGTCATGCCGTGCCTGGACGATGAGGAAAGC
GTGGTCTCACGCAAAAGGCCAGTGCAGGGTAAGCCAAACATTACGTCCAT
GGCAGACAAGGATGCCCACTTATTTGTCAAGGATGGCCACGGGAGAGAGC
ATCACTTCTCTTGCCTGCCATCGACATCCTGTCTGATCGGCCCTGCCCTG
GCACACTTGCCCTCGCCCTTACATGGGTCGTGCCATACTCAGGAGCCTAC
ATGCACGGGCCTACCCCCGGCATCCTTTCACCATCAAGGGCAGCAGGGCC
AGGGGTCCAAAGAATCGTTCTCCATCAATAAAAATCATTCAGTCAGAATG
AGCCATAAAGAAGGGCCGCTGCTGTCAAATGCCTTGAGCTTGTCCAATTC
CTGA
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Synonyms
Publications