jgi.p|Nanoce1779_2|668994, gene_2372 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668994
Unique Name	gene_2372
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_5:181919..188074 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669080
ProteinId	668994
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:181919..188074 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL071	ncniL071	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G00590	NO07G00590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668994	mRNA_2372-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668994	mRNA_2372	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|668994

>mRNA_2372-protein ID=mRNA_2372-protein|Name=jgi.p|Nanoce1779_2|668994|organism=Nannochloropsis oceanica|type=polypeptide|length=1531bp
MDAGQQRFVEAITRLNGTLDEIQRGKCLVQRDLHALIHTLRESREWMVAL
DVAAKKATAAAARSTCSSNTNDEKEGMGGGRDGGREGGLGEEGDEGGDKE
KELMKKYEDKGEAKNKLEGADDNTIITSTTTSTHSTASDEKTQQALALFR
YALLQQATKLSDRLRKIGPPRHEETRQARLVIKAVALYLLWLRSGAGTEE
GQCERVKVTAKVAIDLYGAAACETEKQGGDEEEEEKEEEKQGGFREECVQ
AATLCVDTWRALGEGEGGWEGGWAAARGMESEAVVVAASKSVEVLLDLIW
KRRSTERGRKGGRGGGLTQKEAQEVTRLTVILLEIASAMPKLLLKRAITV
ASDMGRRLVRQRGGGGGRGEGERGGEGKGWSAMACHRQARDIIIATLQTL
EPLLGSTNTTTGSNSNSNSNSSSNTSDSTHTRASSLPPCPPRWVLLTRAS
LLWLLSDVYSQLHDLGKALLCLQELESLQQTHACTSSSSSSSSPPLFLAQ
PKLELAKVSYLLRGGTEEGQEGATIVILRLVDRDLPSALKGARALIACGR
YHPQTFAVFDSILTRCCSFPSSSSSSSFSSSGGMGGDGREAGKEKDLQAA
SILLEQASLLGSALQATSSTHPPSTYQALISRLLSTLTPLLLPSSPFSST
RVSFPLSLSPSLLTETDRNTLKSVLQKALWHTHSQAYNTLPTVEEGEEGR
EEGNEGRSSWHTTQRLCDLLLAVTSAEDEGGKESVLCTKAHAVWEEGGRE
EEAVAVAREACEVRGYRSEKARLNLFWLSTLMAMREGGREGGGKKEEALL
GLMKELVAGVEGGVKTEGGRSGRKKELLEALESMARVVAETMMSEGGREG
GREGEREGGREGRSMASRILKTILAEALRVWKECHDEEGREGGKNGKVGR
GRKTMMAVLSPSSSSSSSSPPSTSSSSPVNPLQLCRAFFEATLSCYHIPI
PSSISSSSPSAFPGARGTNSNAGEALSSSALPPSSSLLTYPQDVFSLPDA
AVEIWRGIVTFALPALDAVSSSNRSNISSPKNSTEEEGGGEGGKGQAAAA
AAAVMQQEDLKWFKALCMNFGIAAAAAATTTASSSCSLSSPSPSAQPQLP
PQNFFVAAHRFHEAVHGPSSLPASSTIEEDKHGLLLLFLAITSSLSSRSS
SSSSSSSSSFSSSFTASSPLTLPPSLLTPDESIYYLSQITRAKQRLSSFT
SSSSSSFSSSSSKLPSLTPLFHNLRVTALLLEVLIRASSSSPSSASSSSR
PSSHASSSRPPSFSGREGGKEDDPTLVLPALIRKEHITLLSLPFEVLHAL
ARLCLRPSFLTSPTPSLRTSALALFRLALQKQQQPQLRTPSSSSFSSSSS
TQSHSTEGPTKEEGREGGREKALWVYLDLYHAVGSTRASLEIVKEFQAEA
KTGFLSPTPTPTLLRVASRLAAALYNEGVGKLEMMSGGEEGEEEGGAEAC
LEASLALLSWSEESFKKNYSEQIESMLAVCRELKEVDRKGGREGGGGAAS
VEAGIEGEKKGGKEDGGHALDRGQIVDTYV*

Synonyms

Publications