jgi.p|Nanoce1779_2|356826, mRNA_10788 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|356826
Unique NamemRNA_10788
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1357
Alignment locationscaffold_59:39213..40569 +

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Properties
Property NameValue
TranscriptId356912
TrackFilteredModels2
ProteinId356826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:39213..40569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|356826gene_10788Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|356826mRNA_10788-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10788CDS_10788Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10788 ID=mRNA_10788|Name=jgi.p|Nanoce1779_2|356826|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp
GCCGCCCCGTAGGTCTCCTTCGGAGCCTAAATCTTTGCCGATGGTAGAGC
GTCTTTTGCTGCCACGATATCATCCCTTTTCTCTCTGGCCAACGTCTCCT
TATTCTTCCTGTTTTGTGTAGATGGGTGGGAAAGAGGGGAGAGATTAAAA
GGAGGAAGGACATCACACACTGCGGCCTTTCTTGCCCACAATATGACAAA
TAGATGACGAAAGGATGATGTCCTTTCTTAGATTGACGTACAATCGCTGC
AATCTCTCCACCCCATCTTTCTCTCATTTCACATCTTGTACGGAGCCATC
GTGGGCGGGCCCAGGGAAGACGACTCGCACCACGATAAATGCGCGGACTT
CATCACGTAAGGGGATGAGGGGGGATGGGGAAGGGAAGGAGAGAAGGAGG
AGGGAAGGGAGGGAGGGAGGGAGGGGTTGTAATGTCACGGACGGAGATAA
AGGGAGGATGCGAGGGAGGGAGGAGGGAGAGAGGGAGAGAGGGAGGGCGC
TTGATTCCGCTTTGACTTTGATTGTTTCTACCAAAATATTTATTTATACA
TATGCACACGATAAAACGACAGGAACGAGGTTGCCCTGGACTACAGTGCT
GGTAAGTCACGGACACCACCGTATATCCTACTCCTACTCCTTCCCAGAGC
TCTCATTTCTTCCGACCTCCCTCTCTCCCTCTCTCCCTCCCGAATCCCTC
CATAGGTTTCCAGGGGGCTGTAGCCGGGTTGAAGCAATTGAGTGCCCAAA
ACATTCTCGGGGACGACCGGTAGGAGAGGGAAAAGGGAGTATAGAAGTGA
AGCAAAGAGAAGGGAAGCAACGCAACGAGAAGAAAAGAGAGGTAAAGAGA
GGACAGAATGAGACAGAAAGCAACAAGAGGAAAATGCGGAAATGGCCTAG
AAAATCAAGAAGGGGGAAGACAGCCGGTGAAACAGGGAGATGTGAACGAA
AGTAACAACATTCTGCGTACTGCTTGTGACTTGCACGTGTAGCTGTATAT
GCGTATGTAGAGTGTACGGCAACAAGGACGTGCACTTGGATGCACGTGAA
GAAAGGAGGGGGGAATGTGGAAGAGACGTAAGGAAGAAGGGAAGGTAGAG
GCGATGACGAAGGATGTGTGCAGTGGAATTGCACAGAGATCGGCGTCGCT
TGCGTGCTTGAGTGAAGTAGGGCGATGCTTCTTGAACGGAGAAAGCAGAG
GAGACAGAAGGGGGGGGGAAGAAAAGAGAAAAGAAGGGACAGACTAAAGG
CATCCGAGAGAAAGAAATCAATTGCTTTGATAGGCCTCAAGCTGTTGGAG
GAAGGACAGAAAGCACATAGCGAGTGAGAACTGAGTGGAAGAAGGAAAAA
ATGGGCA
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protein sequence of jgi.p|Nanoce1779_2|356826

>mRNA_10788-protein ID=mRNA_10788-protein|Name=jgi.p|Nanoce1779_2|356826|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MMSFLRLTYNRCNLSTPSFSHFTSCTEPSWAGPGKTTRTTINARTSSRKG
MRGDGEGKERRRREGREGGRGCNVTDGDKGRMRGREEGERERGRALDSAL
TLIVSTKIFIYTYAHDKTTGTRLPWTTVLVSHGHHRISYSYSFPELSFLP
TSLSPSLPPESLHRFPGGCSRVEAIECPKHSRGRPVGEGKGSIEVKQREG
KQRNEKKREVKRGQNETESNKRKMRKWPRKSRRGKTAGETGRCERK*
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mRNA from alignment at scaffold_59:39213..40569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10788 ID=mRNA_10788|Name=jgi.p|Nanoce1779_2|356826|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp|location=Sequence derived from alignment at scaffold_59:39213..40569+ (Nannochloropsis oceanica)
GCCGCCCCGTAGGTCTCCTTCGGAGCCTAAATCTTTGCCGATGGTAGAGC
GTCTTTTGCTGCCACGATATCATCCCTTTTCTCTCTGGCCAACGTCTCCT
TATTCTTCCTGTTTTGTGTAGATGGGTGGGAAAGAGGGGAGAGATTAAAA
GGAGGAAGGACATCACACACTGCGGCCTTTCTTGCCCACAATATGACAAA
TAGATGACGAAAGGATGATGTCCTTTCTTAGATTGACGTACAATCGCTGC
AATCTCTCCACCCCATCTTTCTCTCATTTCACATCTTGTACGGAGCCATC
GTGGGCGGGCCCAGGGAAGACGACTCGCACCACGATAAATGCGCGGACTT
CATCACGTAAGGGGATGAGGGGGGATGGGGAAGGGAAGGAGAGAAGGAGG
AGGGAAGGGAGGGAGGGAGGGAGGGGTTGTAATGTCACGGACGGAGATAA
AGGGAGGATGCGAGGGAGGGAGGAGGGAGAGAGGGAGAGAGGGAGGGCGC
TTGATTCCGCTTTGACTTTGATTGTTTCTACCAAAATATTTATTTATACA
TATGCACACGATAAAACGACAGGAACGAGGTTGCCCTGGACTACAGTGCT
GGTAAGTCACGGACACCACCGTATATCCTACTCCTACTCCTTCCCAGAGC
TCTCATTTCTTCCGACCTCCCTCTCTCCCTCTCTCCCTCCCGAATCCCTC
CATAGGTTTCCAGGGGGCTGTAGCCGGGTTGAAGCAATTGAGTGCCCAAA
ACATTCTCGGGGACGACCGGTAGGAGAGGGAAAAGGGAGTATAGAAGTGA
AGCAAAGAGAAGGGAAGCAACGCAACGAGAAGAAAAGAGAGGTAAAGAGA
GGACAGAATGAGACAGAAAGCAACAAGAGGAAAATGCGGAAATGGCCTAG
AAAATCAAGAAGGGGGAAGACAGCCGGTGAAACAGGGAGATGTGAACGAA
AGTAACAACATTCTGCGTACTGCTTGTGACTTGCACGTGTAGCTGTATAT
GCGTATGTAGAGTGTACGGCAACAAGGACGTGCACTTGGATGCACGTGAA
GAAAGGAGGGGGGAATGTGGAAGAGACGTAAGGAAGAAGGGAAGGTAGAG
GCGATGACGAAGGATGTGTGCAGTGGAATTGCACAGAGATCGGCGTCGCT
TGCGTGCTTGAGTGAAGTAGGGCGATGCTTCTTGAACGGAGAAAGCAGAG
GAGACAGAAGGGGGGGGGAAGAAAAGAGAAAAGAAGGGACAGACTAAAGG
CATCCGAGAGAAAGAAATCAATTGCTTTGATAGGCCTCAAGCTGTTGGAG
GAAGGACAGAAAGCACATAGCGAGTGAGAACTGAGTGGAAGAAGGAAAAA
ATGGGCA
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Coding sequence (CDS) from alignment at scaffold_59:39213..40569+

>mRNA_10788 ID=mRNA_10788|Name=jgi.p|Nanoce1779_2|356826|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_59:39213..40569+ (Nannochloropsis oceanica)
ATGATGTCCTTTCTTAGATTGACGTACAATCGCTGCAATCTCTCCACCCC
ATCTTTCTCTCATTTCACATCTTGTACGGAGCCATCGTGGGCGGGCCCAG
GGAAGACGACTCGCACCACGATAAATGCGCGGACTTCATCACGTAAGGGG
ATGAGGGGGGATGGGGAAGGGAAGGAGAGAAGGAGGAGGGAAGGGAGGGA
GGGAGGGAGGGGTTGTAATGTCACGGACGGAGATAAAGGGAGGATGCGAG
GGAGGGAGGAGGGAGAGAGGGAGAGAGGGAGGGCGCTTGATTCCGCTTTG
ACTTTGATTGTTTCTACCAAAATATTTATTTATACATATGCACACGATAA
AACGACAGGAACGAGGTTGCCCTGGACTACAGTGCTGGTAAGTCACGGAC
ACCACCGTATATCCTACTCCTACTCCTTCCCAGAGCTCTCATTTCTTCCG
ACCTCCCTCTCTCCCTCTCTCCCTCCCGAATCCCTCCATAGGTTTCCAGG
GGGCTGTAGCCGGGTTGAAGCAATTGAGTGCCCAAAACATTCTCGGGGAC
GACCGGTAGGAGAGGGAAAAGGGAGTATAGAAGTGAAGCAAAGAGAAGGG
AAGCAACGCAACGAGAAGAAAAGAGAGGTAAAGAGAGGACAGAATGAGAC
AGAAAGCAACAAGAGGAAAATGCGGAAATGGCCTAGAAAATCAAGAAGGG
GGAAGACAGCCGGTGAAACAGGGAGATGTGAACGAAAGTAA
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Synonyms
Publications