jgi.p|Nanoce1779_2|365543, mRNA_3552 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|365543
Unique Name	mRNA_3552
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	985
Alignment location	scaffold_6:637732..638879 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	365629
Track	FilteredModels2
ProteinId	365543

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:637732..638879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|365543	gene_3552	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|365543	mRNA_3552-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3552	CDS_3552	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:637732..638879+
coding sequence from alignment at scaffold_6:637732..638879+

mRNA sequence

>mRNA_3552 ID=mRNA_3552|Name=jgi.p|Nanoce1779_2|365543|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
CGGAACCGCGTTCCTATTTCGGGCCACAGTTTCGCGTCGCTTTTTTCTCC
TATTGTAATAATATTTGACAGTGCATAATCGAATTCGTTATCACTTAGTT
GTCTTGTGCAGATTTCGGGGCTATGGGTGGTAAACACGCGAGGTCGTCCT
CCAATAACGGCTCGGTCGCACCCGAACGCATAATGATAATTTTGCACGTA
CTTGGCACGGTCTATACCCCAGAAGGAAAAACTTTAAGACATAATATTAT
AGGTAACCATTTTGGTCGTAAATCGTGCGAATGCAGATCAAAACTTAAAA
AGGACAAGTCAGCACATCAAATCCATGTTTTCCAATGCATGAGATTTATC
AAAATACGGGGTGCTTTTTTCTTTCCTCTTTTCCACCACTTTTTACTTGT
CCACATGAATGATCGTGGTGGTGGTGCGGATCGTTGTCAGTGTTGTTGCT
GCTGCTACTCCAATTGCCACCCGCCCCAGTCGACGTCCCTGGAGACGAGG
CCGCCGCGGCCGCGCGATCCAAACGAGCGCAGCGTAAGAGGTAGGCGACT
TCCCCCTGCAAAAAATCGTGGAGCTGGCCTTTCCGCCAGGCCAAGTACGC
TATCTCTCGTCCAAAATCTGCATCTTCTCCTCTTTCTTCTTCTTCTTCTT
CCACCCCAAACCTTCCTACCCCTCCTCTTCCTTTCCCCCCTCCTCCAACT
ACCCCTCCTCGCCCATCTGCACCGTCTGCGTACGATCGATCTTGAGTCCC
TTCCTCCCTGTTCGGATAAACCTCGTCCTTTACATCCTCTACATCGTCAT
CATCGTCATCTTCATCTTCCCGTGAAAAGGCGGAACGCGTCTCTTCCTCC
TCGTCCTCATCCTCGTCCTCATCCTCCTCCATGATCGACACCATGGAATC
CGTCCGTGTCAAACCCTTCTTCTTATTGTCGATCTCGCCATGGCGCTGCA
ACTCTTCTGGAGAAGACACACTTTCTTCCCCAGCA

protein sequence of jgi.p|Nanoce1779_2|365543

>mRNA_3552-protein ID=mRNA_3552-protein|Name=jgi.p|Nanoce1779_2|365543|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MGGKHARSSSNNGSVAPERIMIILHVLGTVYTPEGKTLRHNIIGNHFGRK
SCECRSKLKKDKSAHQIHVFQCMRFIKIRGAFFFPLFHHFLLVHMNDRGG
GADRCQCCCCCYSNCHPPQSTSLETRPPRPRDPNERSVRGRRLPPAKNRG
AGLSARPSTLSLVQNLHLLLFLLLLLPPQTFLPLLFLSPLLQLPLLAHLH
RLRTIDLESLPPCSDKPRPLHPLHRHHRHLHLPVKRRNASLPPRPHPRPH
PPP*

mRNA from alignment at scaffold_6:637732..638879+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3552 ID=mRNA_3552|Name=jgi.p|Nanoce1779_2|365543|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_6:637732..638879+ (Nannochloropsis oceanica)
CGGAACCGCGTTCCTATTTCGGGCCACAGTTTCGCGTCGCTTTTTTCTCC
TATTGTAATAATATTTGACAGTGCATAATCGAATTCGTTATCACTTAGTT
GTCTTGTGCAGATTTCGGGGCTATGGGTGGTAAACACGCGAGGTCGTCCT
CCAATAACGGCTCGGTCGCACCCGAACGCATAATGATAATTTTGCACGTA
CTTGGCACGGTCTATACCCCAGAAGGAAAAACTTTAAGACATAATATTAT
AGGTAACCATTTTGGTCGTAAATCGTGCGAATGCAGATCAAAACTTAAAA
AGGACAAGTCAGCACATCAAATCCATGTTTTCCAATGCATGAGATTTATC
AAAATACGGGGTGCTTTTTTCTTTCCTCTTTTCCACCACTTTTTACTTGT
CCACATGATTTTTCTACAAGTACAAAACAGGCACATATCTTATCGGTAGA
CGCGTTTAAAGATTTCGCAAGTGAGGTCGTCCGACTCCCACTGACTGCCT
CCCCGCAGCATCTCTATCTGGCGCGCCAACTCCAACTGGAGGTGCTCATG
CTGGTGTCGATGGTGATGGTAATGATCGTGGTGGTGGTGCGGATCGTTGT
CAGTGTTGTTGCTGCTGCTACTCCAATTGCCACCCGCCCCAGTCGACGTC
CCTGGAGACGAGGCCGCCGCGGCCGCGCGATCCAAACGAGCGCAGCGTAA
GAGGTAGGCGACTTCCCCCTGCAAAAAATCGTGGAGCTGGCCTTTCCGCC
AGGCCAAGTACGCTATCTCTCGTCCAAAATCTGCATCTTCTCCTCTTTCT
TCTTCTTCTTCTTCCACCCCAAACCTTCCTACCCCTCCTCTTCCTTTCCC
CCCTCCTCCAACTACCCCTCCTCGCCCATCTGCACCGTCTGCGTACGATC
GATCTTGAGTCCCTTCCTCCCTGTTCGGATAAACCTCGTCCTTTACATCC
TCTACATCGTCATCATCGTCATCTTCATCTTCCCGTGAAAAGGCGGAACG
CGTCTCTTCCTCCTCGTCCTCATCCTCGTCCTCATCCTCCTCCATGATCG
ACACCATGGAATCCGTCCGTGTCAAACCCTTCTTCTTATTGTCGATCTCG
CCATGGCGCTGCAACTCTTCTGGAGAAGACACACTTTCTTCCCCAGCA

Coding sequence (CDS) from alignment at scaffold_6:637732..638879+

>mRNA_3552 ID=mRNA_3552|Name=jgi.p|Nanoce1779_2|365543|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_6:637732..638879+ (Nannochloropsis oceanica)
ATGGGTGGTAAACACGCGAGGTCGTCCTCCAATAACGGCTCGGTCGCACC
CGAACGCATAATGATAATTTTGCACGTACTTGGCACGGTCTATACCCCAG
AAGGAAAAACTTTAAGACATAATATTATAGGTAACCATTTTGGTCGTAAA
TCGTGCGAATGCAGATCAAAACTTAAAAAGGACAAGTCAGCACATCAAAT
CCATGTTTTCCAATGCATGAGATTTATCAAAATACGGGGTGCTTTTTTCT
TTCCTCTTTTCCACCACTTTTTACTTGTCCACATGAATGATCGTGGTGGT
GGTGCGGATCGTTGTCAGTGTTGTTGCTGCTGCTACTCCAATTGCCACCC
GCCCCAGTCGACGTCCCTGGAGACGAGGCCGCCGCGGCCGCGCGATCCAA
ACGAGCGCAGCGTAAGAGGTAGGCGACTTCCCCCTGCAAAAAATCGTGGA
GCTGGCCTTTCCGCCAGGCCAAGTACGCTATCTCTCGTCCAAAATCTGCA
TCTTCTCCTCTTTCTTCTTCTTCTTCTTCCACCCCAAACCTTCCTACCCC
TCCTCTTCCTTTCCCCCCTCCTCCAACTACCCCTCCTCGCCCATCTGCAC
CGTCTGCGTACGATCGATCTTGAGTCCCTTCCTCCCTGTTCGGATAAACC
TCGTCCTTTACATCCTCTACATCGTCATCATCGTCATCTTCATCTTCCCG
TGAAAAGGCGGAACGCGTCTCTTCCTCCTCGTCCTCATCCTCGTCCTCAT
CCTCCTCCATGAATGGGTGGTAAACACGCGAGGTCGTCCTCCAATAACGG
CTCGGTCGCACCCGAACGCATAATGATAATTTTGCACGTACTTGGCACGG
TCTATACCCCAGAAGGAAAAACTTTAAGACATAATATTATAGGTAACCAT
TTTGGTCGTAAATCGTGCGAATGCAGATCAAAACTTAAAAAGGACAAGTC
AGCACATCAAATCCATGTTTTCCAATGCATGAGATTTATCAAAATACGGG
GTGCTTTTTTCTTTCCTCTTTTCCACCACTTTTTACTTGTCCACATGAAT
GATCGTGGTGGTGGTGCGGATCGTTGTCAGTGTTGTTGCTGCTGCTACTC
CAATTGCCACCCGCCCCAGTCGACGTCCCTGGAGACGAGGCCGCCGCGGC
CGCGCGATCCAAACGAGCGCAGCGTAAGAGGTAGGCGACTTCCCCCTGCA
AAAAATCGTGGAGCTGGCCTTTCCGCCAGGCCAAGTACGCTATCTCTCGT
CCAAAATCTGCATCTTCTCCTCTTTCTTCTTCTTCTTCTTCCACCCCAAA
CCTTCCTACCCCTCCTCTTCCTTTCCCCCCTCCTCCAACTACCCCTCCTC
GCCCATCTGCACCGTCTGCGTACGATCGATCTTGAGTCCCTTCCTCCCTG
TTCGGATAAACCTCGTCCTTTACATCCTCTACATCGTCATCATCGTCATC
TTCATCTTCCCGTGAAAAGGCGGAACGCGTCTCTTCCTCCTCGTCCTCAT
CCTCGTCCTCATCCTCCTCCATGA

Synonyms

Publications