jgi.p|Nanoce1779_2|582576, mRNA_3553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582576
Unique NamemRNA_3553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1208
Alignment locationscaffold_6:638595..639906 -

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Properties
Property NameValue
TranscriptId582662
TrackFilteredModels2
ProteinId582576
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:638595..639906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582576gene_3553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582576mRNA_3553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3553CDS_3553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3553 ID=mRNA_3553|Name=jgi.p|Nanoce1779_2|582576|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
TCGATGCTGCTCTCAGCTGGCAGCCTGCAATGAGCAGCAACGGGATGCTC
TTCTTCCTCGACCCCAGTTTCAGCTGCTGGAGTGTTGTTTCTTGTCTCTA
CAATCTTTGTGCGTATACAATGCCGACACATGCGCACGTACAGGTATTTT
CACTTTCTGTCTCAATTTCGCACTGCGCTACGCTAAGTTTTTACCCTGCA
ACCGCCCCCACACGACACGATACAGGGCACGATAATTCGGATACGAGGGC
AGCCTGGTCTCTCTGCCTTGCGTTGGTCGTCCCCTCATCCTCGGGGCCGC
CAGAGACCTGTGTGTAATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGG
CGGCACCCGGCACAAATGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGG
GACTGGGGACAGCATTGGCTGGACTTGGACAGGGATTACTTTAGGCCTGT
CTCGACCACCGACATTGAAAATCTTCGATCACAGCTTCGGAACGTGGAAG
AAATGATTATCGAAGCGGAGGCCTCCTCTCTTTTCAGGCCGCTAGGTATC
GCTTCATTAAACGTGGTGGGGCAGTCTGCATGCACCAAGCTCCAGCAGCA
GCAGCAGCAGCGGCAGCAGGAGCAGCAGCAGCAGGAGGAGGTAGCAAGAG
AAGAGGAGCGGGGCCTTCTTCCCACGTCCCAGGAGGAGGCGGAGGAGAAC
GATGCGAGCTCGGTGCGGCTTCAACCGACCATCCAACTACAACCGCCATG
CCCGCCCTCGGACAGCTCAGCATCCACGTCGTCCTGCTCAATCAGCGACA
AGGAAAACAAGGCCAAGAGGTGAGTTTGGAGAGAAAAAACGTCTATCGCT
AAAAATGCGGAGACGCGCATCTTTATTATCTGTATCACCACGCTTACAGG
GGAAAATGGCGGCGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTTCTCC
AGAAGAGTTGCAGCGCCATGGCGAGATCGACAATAAGAAGAAGGGTTTGA
CACGGACGGATTCCATGGTGTCGATCATGGAGGAGGATGAGGACGAGGAT
GAGGACGAGGAGGAAGAGACGCGTTCCGCCTTTTCACGGGAAGATGAAGA
TGACGATGATGACGATGTAGAGGATGTAAAGGACGAGGTTTATCCGAACA
GGGAGGAAGGGACTCAAGATCGATCGTACGCAGACGGTGCAGATGGGCGA
GGAGGGGT
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protein sequence of jgi.p|Nanoce1779_2|582576

>mRNA_3553-protein ID=mRNA_3553-protein|Name=jgi.p|Nanoce1779_2|582576|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MQGEEESPHYVAAPGTNDSGGPKRTSSRDWGQHWLDLDRDYFRPVSTTDI
ENLRSQLRNVEEMIIEAEASSLFRPLGIASLNVVGQSACTKLQQQQQQRQ
QEQQQQEEVAREEERGLLPTSQEEAEENDASSVRLQPTIQLQPPCPPSDS
SASTSSCSISDKENKAKR*
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mRNA from alignment at scaffold_6:638595..639906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3553 ID=mRNA_3553|Name=jgi.p|Nanoce1779_2|582576|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_6:638595..639906- (Nannochloropsis oceanica)
TCGATGCTGCTCTCAGCTGGCAGCCTGCAATGAGCAGCAACGGGATGCTC
TTCTTCCTCGACCCCAGTTTCAGCTGCTGGAGTGTTGTTTCTTGTCTCTA
CAATCTTTGTGCGTATACAATGCCGACACATGCGCACGTACAGGTATTTT
CACTTTCTGTCTCAATTTCGCACTGCGCTACGCTAAGTTTTTACCCTGCA
ACCGCCCCCACACGACACGATACAGGGCACGATAATTCGGATACGAGGGC
AGCCTGGTCTCTCTGCCTTGCGTTGGTCGTCCCCTCATCCTCGGGGCCGC
CAGAGACCTGTGTGTAATGCAGGGGGAGGAGGAGAGTCCGCACTACGTGG
CGGCACCCGGCACAAATGACAGCGGGGGGCCGAAGCGGACGTCCAGCAGG
GACTGGGGACAGCATTGGCTGGACTTGGACAGGGATTACTTTAGGCCTGT
CTCGACCACCGACATTGAAAATCTTCGATCACAGGTACGCCTGCGGGGTT
GGGGGCGTGAGATGGGTCTGCGGAAATGTGCTTGTGTAACTTATGGATGG
GCCCTGACCGACTCCCTTCCCTCCCTTCCCCACCACAGCTTCGGAACGTG
GAAGAAATGATTATCGAAGCGGAGGCCTCCTCTCTTTTCAGGCCGCTAGG
TATCGCTTCATTAAACGTGGTGGGGCAGTCTGCATGCACCAAGCTCCAGC
AGCAGCAGCAGCAGCGGCAGCAGGAGCAGCAGCAGCAGGAGGAGGTAGCA
AGAGAAGAGGAGCGGGGCCTTCTTCCCACGTCCCAGGAGGAGGCGGAGGA
GAACGATGCGAGCTCGGTGCGGCTTCAACCGACCATCCAACTACAACCGC
CATGCCCGCCCTCGGACAGCTCAGCATCCACGTCGTCCTGCTCAATCAGC
GACAAGGAAAACAAGGCCAAGAGGTGAGTTTGGAGAGAAAAAACGTCTAT
CGCTAAAAATGCGGAGACGCGCATCTTTATTATCTGTATCACCACGCTTA
CAGGGGAAAATGGCGGCGGGCTGCTTTTGCTGGGGAAGAAAGTGTGTCTT
CTCCAGAAGAGTTGCAGCGCCATGGCGAGATCGACAATAAGAAGAAGGGT
TTGACACGGACGGATTCCATGGTGTCGATCATGGAGGAGGATGAGGACGA
GGATGAGGACGAGGAGGAAGAGACGCGTTCCGCCTTTTCACGGGAAGATG
AAGATGACGATGATGACGATGTAGAGGATGTAAAGGACGAGGTTTATCCG
AACAGGGAGGAAGGGACTCAAGATCGATCGTACGCAGACGGTGCAGATGG
GCGAGGAGGGGT
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Coding sequence (CDS) from alignment at scaffold_6:638595..639906-

>mRNA_3553 ID=mRNA_3553|Name=jgi.p|Nanoce1779_2|582576|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_6:638595..639906- (Nannochloropsis oceanica)
CTTCGGAACGTGGAAGAAATGATTATCGAAGCGGAGGCCTCCTCTCTTTT
CAGGCCGCTAGGTATCGCTTCATTAAACGTGGTGGGGCAGTCTGCATGCA
CCAAGCTCCAGCAGCAGCAGCAGCAGCGGCAGCAGGAGCAGCAGCAGCAG
GAGGAGGTAGCAAGAGAAGAGGAGCGGGGCCTTCTTCCCACGTCCCAGGA
GGAGGCGGAGGAGAACGATGCGAGCTCGGTGCGGCTTCAACCGACCATCC
AACTACAACCGCCATGCCCGCCCTCGGACAGCTCAGCATCCACGTCGTCC
TGCTCAATCAGCGACAAGGAAAACAAGGCCAAGAGGTGAATGCAGGGGGA
GGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAATGACAGCGGGG
GGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATTGGCTGGACTTG
GACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATTGAAAATCTTCG
ATCACAGCTTCGGAACGTGGAAGAAATGATTATCGAAGCGGAGGCCTCCT
CTCTTTTCAGGCCGCTAGGTATCGCTTCATTAAACGTGGTGGGGCAGTCT
GCATGCACCAAGCTCCAGCAGCAGCAGCAGCAGCGGCAGCAGGAGCAGCA
GCAGCAGGAGGAGGTAGCAAGAGAAGAGGAGCGGGGCCTTCTTCCCACGT
CCCAGGAGGAGGCGGAGGAGAACGATGCGAGCTCGGTGCGGCTTCAACCG
ACCATCCAACTACAACCGCCATGCCCGCCCTCGGACAGCTCAGCATCCAC
GTCGTCCTGCTCAATCAGCGACAAGGAAAACAAGGCCAAGAGGTGAATGC
AGGGGGAGGAGGAGAGTCCGCACTACGTGGCGGCACCCGGCACAAATGAC
AGCGGGGGGCCGAAGCGGACGTCCAGCAGGGACTGGGGACAGCATTGGCT
GGACTTGGACAGGGATTACTTTAGGCCTGTCTCGACCACCGACATTGAAA
ATCTTCGATCACAG
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Synonyms
Publications