Properties
| Property Name | Value |
|---|
| TranscriptId | 629105 |
| Track | FilteredModels2 |
| ProteinId | 629019 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:796059..798395 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3623 ID=mRNA_3623|Name=jgi.p|Nanoce1779_2|629019|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp
CATCGTTGAGTGGTTAGGATTGGGCGGGTGCTGTAAATATGCGTGAGAGG
TGGAATTGCAGATGGAGATAAGTGCTGGGCGTGGAAGTGGCTTCCAATGG
GATGCGGACTGGAAGGTAGAAAGAAGGGGGAGGAGGGCGAGAGGAAGAGG
AGGGAGGTCGCTCAGTGGCGGACTGAGGACGACGCCAAAAGAACATGATC
TCGCAGCCTGTCAACCATCTCAGGGCTTGGATACGGTGACAGTCTTATTG
CTGCTCTTGTCTGTACAGTGATAGGAAGTAAGATAATCGTAATATCGAGG
AGGGTTGCCTGCATCAAACTGTGTCCATACGCATAGGACTCCTCGGAGCA
ACGGCAGCATGCAACACTTCACTTAAACCTCAAGCCCAGCGCGATTCTCA
CTCATCCAATGAACCCTCCACATGACAGGCACACGCAAGAGGCCACGCCA
ATACCTTTCGTCGTTGTCACGACACCCCTGGTGCTGCACAAACCGCGTCC
ATCCGCAGCGAGCTTAGCCTCCTGCCTCCCCCTACGTCCTAACCCCCCAC
CGCCGTACGATAATGAGGCGCATCACCACTAGCTCCGCCAGCCGGCAGAA
CGCACACAGTAAACCATACCCTCTCCCAGTCACTCTCACTATAGTACTAC
TTGCTGCTGCCTTGCCCACGACTACCCTTTCTTTCGTCCTACCCATCCTC
CCCTCCTCCCCTCCTTGGGGCGGCTTAACTACAACTATCACTACCACCTC
AAGGATACATCTACCACAACCCCTCGCAGCTGCAGGAGGGACCACTAACG
AGAGGATGGAGCAGATGACCTTGCAACCCATAAAGACTTTCGAGGGAGAA
ATTGAGCTCCCCGGCAGCAAGTCCATCAGCAACCGCATCCTTCTCCTCGC
AGCGCTGAGCCAAGGCACCACTGTTGTCGACAACCTGCTCCAAAGCGAAG
ACATCGAGTACATGCTTCAAGCCCTCACCACATTAGGAATTAATCTCGAG
AACACCGGCGATAACCAATGGACCGTCCCCGGCCGCGGGGCGCCCTTCGA
TACCACCTCCCCTGTAGATCTCTTTCTCGGCAATGCCGGCACGGCCATGC
GTCCCTTAACTGCCGCCCTCTGCGCTGGCCAAGGAGAATTTAGCCTCGAC
GGGACCCCGCGTATGCGCGAACGCCCCATTTCCGACTTGACCGATGGTTT
AAAACAACTTGGGGTCGACGTGACCTGTTCCGACACTGGTTGTCCGCCCG
TCAAAATCAAGGCTAAAGGCCTCCCTGGTGGAAGCATGCGTATTTCAGGC
AAGATCTCAAGCCAGTACCTTTCAGCCCTCCTCATGGCTGCGCCGCTCGC
CAAGGGAGATATCACGATCATAATCTCTGATGAGCTGGTTTCTGCCCCTT
ATGTGCATATGACTATCAAATTGATGCAACGCTTTGGGGTCCATGTGGAG
AACGACAATGACCGCACTTTTACTATTCGTGCCGGGCAAACCTACCGTTC
ACCAGGTCAGATATTCACAGAAGGCGACGCATCCTCGGCATCTTATTTCC
TGGCAGGCGCTGCAATAGCTGGGGGGACAGTGACCGTGAAGGGGTGTGGG
AGCGAGAGTGTGCAGGGCGACGTGTATTTTGCCACGGTGCTGGGGATGAT
GGGCGCGCAGGTTGACTGGACCCCGAACTCGATCACAGTTTCGAGGAAAC
CTGGTGTGGTGCTTAAGGGGATTGATGTGGACTGCGGAGCCATCCCGGAT
GCGGCCATGACGTTGGCAATCGTGGCGCTGTTTGCAGACGGACCGACGGC
GATCAGAAATGTCTACAACTGGCGCGTTAAGGAAACGGAGCGCATGAGGG
CCATCGTCACAGAGCTCACCAAACTCGGCGCCACTGTCGAGGAGGGCCGG
GACTTCTGCATCGTCCATCCACTCAAGCAGTTGAATGCCAACGTGGCTAT
CGATACCTATGACGACCACCGCATGGCCATGTGCTTTTCCCTCGCCGCCT
GTGGAGGAGTCCCCGTGGTGATAAACGACCCCAAGTGCGTTAGGAAGACG
TTTCCGGATTACTTTGAACGGTTGGCGGTTATGAGTAAGTAGGAAGAGAG
GAGATAAGATAAGAAAGGGATGAAAAGCACCCGAGTCTGAAGTGAAGGCC
TAGGAGATCCAAACAAAAAAGGAACAACATGAACCACGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|629019 >mRNA_3623-protein ID=mRNA_3623-protein|Name=jgi.p|Nanoce1779_2|629019|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MRRITTSSASRQNAHSKPYPLPVTLTIVLLAAALPTTTLSFVLPILPSSP
PWGGLTTTITTTSRIHLPQPLAAAGGTTNERMEQMTLQPIKTFEGEIELP
GSKSISNRILLLAALSQGTTVVDNLLQSEDIEYMLQALTTLGINLENTGD
NQWTVPGRGAPFDTTSPVDLFLGNAGTAMRPLTAALCAGQGEFSLDGTPR
MRERPISDLTDGLKQLGVDVTCSDTGCPPVKIKAKGLPGGSMRISGKISS
QYLSALLMAAPLAKGDITIIISDELVSAPYVHMTIKLMQRFGVHVENDND
RTFTIRAGQTYRSPGQIFTEGDASSASYFLAGAAIAGGTVTVKGCGSESV
QGDVYFATVLGMMGAQVDWTPNSITVSRKPGVVLKGIDVDCGAIPDAAMT
LAIVALFADGPTAIRNVYNWRVKETERMRAIVTELTKLGATVEEGRDFCI
VHPLKQLNANVAIDTYDDHRMAMCFSLAACGGVPVVINDPKCVRKTFPDY
FERLAVMSK* back to topmRNA from alignment at scaffold_6:796059..798395- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3623 ID=mRNA_3623|Name=jgi.p|Nanoce1779_2|629019|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp|location=Sequence derived from alignment at scaffold_6:796059..798395- (Nannochloropsis oceanica)
CATCGTTGAGTGGTTAGGATTGGGCGGGTGCTGTAAATATGCGTGAGAGG
TGGAATTGCAGATGGAGATAAGTGCTGGGCGTGGAAGTGGCTTCCAATGG
GATGCGGACTGGAAGGTAGAAAGAAGGGGGAGGAGGGCGAGAGGAAGAGG
AGGGAGGTCGCTCAGTGGCGGACTGAGGACGACGCCAAAAGAACATGATC
TCGCAGCCTGTCAACCATCTCAGGGCTTGGATACGGTGACAGTCTTATTG
CTGCTCTTGTCTGTACAGTGATAGGAAGTAAGATAATCGTAATATCGAGG
AGGGTTGCCTGCATCAAACTGTGTCCATACGCATAGGACTCCTCGGAGCA
ACGGCAGCATGCAACACTTCACTTAAACCTCAAGCCCAGCGCGATTCTCA
CTCATCCAATGAACCCTCCACATGACAGGCACACGCAAGAGGCCACGCCA
ATACCTTTCGTCGTTGTCACGACACCCCTGGTGCTGCACAAACCGCGTCC
ATCCGCAGCGAGCTTAGCCTCCTGCCTCCCCCTACGTCCTAACCCCCCAC
CGCCGTACGATAATGAGGCGCATCACCACTAGCTCCGCCAGCCGGCAGAA
CGCACACAGTAAACCATACCCTCTCCCAGTCACTCTCACTATAGTACTAC
TTGCTGCTGCCTTGCCCACGACTACCCTTTCTTTCGTCCTACCCATCCTC
CCCTCCTCCCCTCCTTGGGGCGGCTTAACTACAACTATCACTACCACCTC
AAGGATACATCTACCACAACCCCTCGCAGCTGCAGGAGGGACCACTAACG
AGAGGATGGAGCAGATGACCTTGCAACCCATAAAGACTTTCGAGGGAGAA
ATTGAGCTCCCCGGCAGCAAGTCCATCAGCAACCGCATCCTTCTCCTCGC
AGCGCTGAGCCAAGGCACCACTGTTGTCGACAACCTGCTCCAAAGCGAAG
ACATCGAGTACATGCTTCAAGCCCTCACCACATTAGGAATTAATCTCGAG
AACACCGGCGATAACCAATGGACCGTCCCCGGCCGCGGGGCGCCCTTCGA
TACCACCTCCCCTGTAGATCTCTTTCTCGGCAATGCCGGCACGGCCATGC
GTCCCTTAACTGCCGCCCTCTGCGCTGGCCAAGGAGAATTTAGCCTCGAC
GGGACCCCGCGTATGCGCGAACGCCCCATTTCCGACTTGACCGATGGTTT
AAAACAACTTGGGGTCGACGTGACCTGTTCCGACACTGGTTGTCCGCCCG
TCAAAATCAAGGCTAAAGGCCTCCCTGGTGGAAGCATGCGTATTTCAGGC
AAGATCTCAAGCCAGTACCTTTCAGCCCTCCTCATGGCTGCGCCGCTCGC
CAAGGGAGATATCACGATCATAATCTCTGATGAGCTGGTTTCTGCCCCTT
ATGTGCATATGACTATCAAATTGATGCAACGCTTTGGGGTCCATGTGGAG
AACGACAATGACCGCACTTTTACTATTCGTGCCGGGCAAACCTACCGTTC
ACCAGGTCAGATATTCACAGAAGGCGACGCATCCTCGGCATCTTATTTCC
TGGCAGGCGCTGCAATAGCTGGGGGGACAGTGACCGTGAAGGGGTGTGGG
AGCGAGAGTGTGCAGGGCGACGTGTATTTTGCCACGGTGCTGGGGATGAT
GGGCGCGCAGGTTGACTGGACCCCGAACTCGATCACAGTTTCGAGGAAAC
CTGGTGTGGTGCTTAAGGGGATTGATGTGGACTGCGGAGCCATCCCGGAT
GCGGCCATGACGTTGGCAATCGTGGCGCTGTTTGCAGACGGACCGACGGC
GATCAGGTACATGGAGGGGGGGAAGGAGGAAGGAAAGGGATTATTATGTG
GGCGACACTGTCGAAGATCCTAAGTTTTCCCTTTTCCCTGTTCCTTCCCT
CTTTCATCTCTCTTTCTCCTTCTCCCTCCCTCGCTCCTTTCCCCAACCCC
AGAAATGTCTACAACTGGCGCGTTAAGGAAACGGAGCGCATGAGGGCCAT
CGTCACAGAGCTCACCAAACTCGGCGCCACTGTCGAGGAGGGCCGGGACT
TCTGCATCGTCCATCCACTCAAGCAGTTGAATGCCAACGTGGCTATCGAT
ACCTATGACGACCACCGCATGGCCATGTGCTTTTCCCTCGCCGCCTGTGG
AGGAGTCCCCGTGGTGATAAACGACCCCAAGTGCGTTAGGAAGACGTTTC
CGGATTACTTTGAACGGTTGGCGGTTATGAGTAAGTAGGAAGAGAGGAGA
TAAGATAAGAAAGGGATGAAAAGCACCCGAGTCTGAAGTGAAGGCCTAGG
AGATCCAAACAAAAAAGGAACAACATGAACCACGAGG back to topCoding sequence (CDS) from alignment at scaffold_6:796059..798395- >mRNA_3623 ID=mRNA_3623|Name=jgi.p|Nanoce1779_2|629019|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_6:796059..798395- (Nannochloropsis oceanica)
AAATGTCTACAACTGGCGCGTTAAGGAAACGGAGCGCATGAGGGCCATCG
TCACAGAGCTCACCAAACTCGGCGCCACTGTCGAGGAGGGCCGGGACTTC
TGCATCGTCCATCCACTCAAGCAGTTGAATGCCAACGTGGCTATCGATAC
CTATGACGACCACCGCATGGCCATGTGCTTTTCCCTCGCCGCCTGTGGAG
GAGTCCCCGTGGTGATAAACGACCCCAAGTGCGTTAGGAAGACGTTTCCG
GATTACTTTGAACGGTTGGCGGTTATGAGTAAGTAGATGAGGCGCATCAC
CACTAGCTCCGCCAGCCGGCAGAACGCACACAGTAAACCATACCCTCTCC
CAGTCACTCTCACTATAGTACTACTTGCTGCTGCCTTGCCCACGACTACC
CTTTCTTTCGTCCTACCCATCCTCCCCTCCTCCCCTCCTTGGGGCGGCTT
AACTACAACTATCACTACCACCTCAAGGATACATCTACCACAACCCCTCG
CAGCTGCAGGAGGGACCACTAACGAGAGGATGGAGCAGATGACCTTGCAA
CCCATAAAGACTTTCGAGGGAGAAATTGAGCTCCCCGGCAGCAAGTCCAT
CAGCAACCGCATCCTTCTCCTCGCAGCGCTGAGCCAAGGCACCACTGTTG
TCGACAACCTGCTCCAAAGCGAAGACATCGAGTACATGCTTCAAGCCCTC
ACCACATTAGGAATTAATCTCGAGAACACCGGCGATAACCAATGGACCGT
CCCCGGCCGCGGGGCGCCCTTCGATACCACCTCCCCTGTAGATCTCTTTC
TCGGCAATGCCGGCACGGCCATGCGTCCCTTAACTGCCGCCCTCTGCGCT
GGCCAAGGAGAATTTAGCCTCGACGGGACCCCGCGTATGCGCGAACGCCC
CATTTCCGACTTGACCGATGGTTTAAAACAACTTGGGGTCGACGTGACCT
GTTCCGACACTGGTTGTCCGCCCGTCAAAATCAAGGCTAAAGGCCTCCCT
GGTGGAAGCATGCGTATTTCAGGCAAGATCTCAAGCCAGTACCTTTCAGC
CCTCCTCATGGCTGCGCCGCTCGCCAAGGGAGATATCACGATCATAATCT
CTGATGAGCTGGTTTCTGCCCCTTATGTGCATATGACTATCAAATTGATG
CAACGCTTTGGGGTCCATGTGGAGAACGACAATGACCGCACTTTTACTAT
TCGTGCCGGGCAAACCTACCGTTCACCAGGTCAGATATTCACAGAAGGCG
ACGCATCCTCGGCATCTTATTTCCTGGCAGGCGCTGCAATAGCTGGGGGG
ACAGTGACCGTGAAGGGGTGTGGGAGCGAGAGTGTGCAGGGCGACGTGTA
TTTTGCCACGGTGCTGGGGATGATGGGCGCGCAGGTTGACTGGACCCCGA
ACTCGATCACAGTTTCGAGGAAACCTGGTGTGGTGCTTAAGGGGATTGAT
GTGGACTGCGGAGCCATCCCGGATGCGGCCATGACGTTGGCAATCGTGGC
GCTGTTTGCAGACGGACCGACGGCGATCAGAAATGTCTACAACTGGCGCG
TTAAGGAAACGGAGCGCATGAGGGCCATCGTCACAGAGCTCACCAAACTC
GGCGCCACTGTCGAGGAGGGCCGGGACTTCTGCATCGTCCATCCACTCAA
GCAGTTGAATGCCAACGTGGCTATCGATACCTATGACGACCACCGCATGG
CCATGTGCTTTTCCCTCGCCGCCTGTGGAGGAGTCCCCGTGGTGATAAAC
GACCCCAAGTGCGTTAGGAAGACGTTTCCGGATTACTTTGAACGGTTGGC
GGTTATGAGTAAGTAGATGAGGCGCATCACCACTAGCTCCGCCAGCCGGC
AGAACGCACACAGTAAACCATACCCTCTCCCAGTCACTCTCACTATAGTA
CTACTTGCTGCTGCCTTGCCCACGACTACCCTTTCTTTCGTCCTACCCAT
CCTCCCCTCCTCCCCTCCTTGGGGCGGCTTAACTACAACTATCACTACCA
CCTCAAGGATACATCTACCACAACCCCTCGCAGCTGCAGGAGGGACCACT
AACGAGAGGATGGAGCAGATGACCTTGCAACCCATAAAGACTTTCGAGGG
AGAAATTGAGCTCCCCGGCAGCAAGTCCATCAGCAACCGCATCCTTCTCC
TCGCAGCGCTGAGCCAAGGCACCACTGTTGTCGACAACCTGCTCCAAAGC
GAAGACATCGAGTACATGCTTCAAGCCCTCACCACATTAGGAATTAATCT
CGAGAACACCGGCGATAACCAATGGACCGTCCCCGGCCGCGGGGCGCCCT
TCGATACCACCTCCCCTGTAGATCTCTTTCTCGGCAATGCCGGCACGGCC
ATGCGTCCCTTAACTGCCGCCCTCTGCGCTGGCCAAGGAGAATTTAGCCT
CGACGGGACCCCGCGTATGCGCGAACGCCCCATTTCCGACTTGACCGATG
GTTTAAAACAACTTGGGGTCGACGTGACCTGTTCCGACACTGGTTGTCCG
CCCGTCAAAATCAAGGCTAAAGGCCTCCCTGGTGGAAGCATGCGTATTTC
AGGCAAGATCTCAAGCCAGTACCTTTCAGCCCTCCTCATGGCTGCGCCGC
TCGCCAAGGGAGATATCACGATCATAATCTCTGATGAGCTGGTTTCTGCC
CCTTATGTGCATATGACTATCAAATTGATGCAACGCTTTGGGGTCCATGT
GGAGAACGACAATGACCGCACTTTTACTATTCGTGCCGGGCAAACCTACC
GTTCACCAGGTCAGATATTCACAGAAGGCGACGCATCCTCGGCATCTTAT
TTCCTGGCAGGCGCTGCAATAGCTGGGGGGACAGTGACCGTGAAGGGGTG
TGGGAGCGAGAGTGTGCAGGGCGACGTGTATTTTGCCACGGTGCTGGGGA
TGATGGGCGCGCAGGTTGACTGGACCCCGAACTCGATCACAGTTTCGAGG
AAACCTGGTGTGGTGCTTAAGGGGATTGATGTGGACTGCGGAGCCATCCC
GGATGCGGCCATGACGTTGGCAATCGTGGCGCTGTTTGCAGACGGACCGA
CGGCGATCAG back to top
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