jgi.p|Nanoce1779_2|379155, mRNA_10666 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|379155
Unique Name	mRNA_10666
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1349
Alignment location	scaffold_61:84346..86195 +

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Properties


Property Name	Value
TranscriptId	379241
Track	FilteredModels2
ProteinId	379155

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_61	supercontig	scaffold_61:84346..86195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|379155	gene_10666	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|379155	mRNA_10666-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10666	CDS_10666	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_61:84346..86195+
coding sequence from alignment at scaffold_61:84346..86195+

mRNA sequence

>mRNA_10666 ID=mRNA_10666|Name=jgi.p|Nanoce1779_2|379155|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
CGTCCTTACCCCCCCCTCGCGGCCCGCTTGGGTTTGTCGGGGCTGCCCCA
CCACACCCTTTCCTCCCTCCCGCCCTTTCTCACGCCCTCCCTCGACCCCC
GCGAAAAAGCGGCCGTGCTGATGAAGGCCTTGGACGGCTTGCTTGCCCCG
GAGTGGAGGAGGAAGGGGGATATATGGAGGAGGGACGGAGGGGAGATGGA
GGGGGAGAGAAGGAGGAGGGAGGTGAGGGAGAAATGGGAGGAGGACCTGC
ACGGTGTGAGGCAGGAGGCAGCCCGCCTGGCGGTGAGGGAGGGACAGAGG
GAGAGGGAGATGGAGAGGGAGGAGGAAACGCAGCAGCCGCAACAATCCTC
ATTCCCTTCCTCCTCCTCTTCCTCCCCTCCCTCCACCTCGACCTTCCTCC
AAGAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCGTTTTCCAAAAT
CCCCTGCGTCAGATGCAGCTTGTGCTTGGCCGCCCCCCCTCCGTCGAGGA
CCTCCCGTGGCTCGACGCCTCGGGCCTGCTTTCTCCCCCTCCCTCCCTTC
CTCCGTCCCCCACGCCCTCTCTCGTGCGCCTCTTCTCCCCCCCTCCTTCC
CCCCCTCCCTCCCCCCCGTCCTCCCTTGAAGGGTGGTTGGACCTGTGGGT
GTGCCGGTACTGGATCGAGGCCGAGAGGACGTACGAGGCGCGACATCCTC
CATCCTTGATCAGGAGGAGGGAGGAGCGCAGGGGGAGGGTGTTGTCGTTG
AGGGAGTGGAGGGAAGAGGAGGAAAGGGAGAGGGAGAGGAGAGGGGGAGG
AGGGAGGAGGGGATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAA
GGGAGGGCGGGCGGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCAT
TCAAGGGTACAGAGGAATGAAGATTCGCCTCTGCAGGACCCAGGTATTAA
GGAGGAGGAGGAGGAGGAGGAGGAGGATGATGATGACGAGGAAGACCCCT
ACCTCGACGACGCCTACCCTCCCTCCCCTACTTCTTCCTTCCCTCCCTCT
TCCTCCTCCCCTTCCATGGGCGGATTGGAAGACCCGCCTCTCTATTTGGG
CCGGGGGAGGAGAGAGGGAGGGACAAAAGCGAGGAGGAGGGAGAGGAGGT
GGCGAAGGAGGAGGAGGAGGAGGAGGAAGAGGTGAAGGAGGAGGAGGAGG
GAGGAAGAGGAGGAGGAGGAGGAACAGGAGGAGGAGGAGGAAGAATGGGA
GTATGTTTACGAGGACGAGTTGGAGGAAGGGACGAATTCCAGTACCTCGC
TGAAGAGGAAGAGGCATCCCTCTTTGCCATGAGAGAAAGAGACAACTCC

protein sequence of jgi.p|Nanoce1779_2|379155

>mRNA_10666-protein ID=mRNA_10666-protein|Name=jgi.p|Nanoce1779_2|379155|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MKALDGLLAPEWRRKGDIWRRDGGEMEGERRRREVREKWEEDLHGVRQEA
ARLAVREGQREREMEREEETQQPQQSSFPSSSSSSPPSTSTFLQEPLPPS
LPPSLAVFQNPLRQMQLVLGRPPSVEDLPWLDASGLLSPPPSLPPSPTPS
LVRLFSPPPSPPPSPPSSLEGWLDLWVCRYWIEAERTYEARHPPSLIRRR
EERRGRVLSLREWREEEERERERRGGGGRRGWGGSWRRGRVGRREGGRES
EMKAGGGATHSRVQRNEDSPLQDPGIKEEEEEEEEDDDDEEDPYLDDAYP
PSPTSSFPPSSSSPSMGGLEDPPLYLGRGRREGGTKARRRERRWRRRRRR
RRKR*

mRNA from alignment at scaffold_61:84346..86195+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10666 ID=mRNA_10666|Name=jgi.p|Nanoce1779_2|379155|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp|location=Sequence derived from alignment at scaffold_61:84346..86195+ (Nannochloropsis oceanica)
CGTCCTTACCCCCCCCTCGCGGCCCGCTTGGGTTTGTCGGGGCTGCCCCA
CCACACCCTTTCCTCCCTCCCGCCCTTTCTCACGCCCTCCCTCGACCCCC
GCGAAAAAGCGGCCGTGCTGATGAAGGCCTTGGACGGCTTGCTTGCCCCG
GAGTGGAGGAGGAAGGGGGATATATGGAGGAGGGACGGAGGGGAGATGGA
GGGGGAGAGAAGGAGGAGGGAGGTGAGGGAGAAATGGGAGGAGGACCTGC
ACGGTGTGAGGCAGGAGGCAGCCCGCCTGGCGGTGAGGGAGGGACAGAGG
GAGAGGGAGATGGAGAGGGAGGAGGAAACGCAGCAGCCGCAACAATCCTC
ATTCCCTTCCTCCTCCTCTTCCTCCCCTCCCTCCACCTCGACCTTCCTCC
AAGAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCGTTTTCCAAAAT
CCCCTGCGTCAGATGCAGCTTGTGCTTGGCCGCCCCCCCTCCGTCGAGGA
CCTCCCGTGGCTCGACGCCTCGGGCCTGCTTTCTCCCCCTCCCTCCCTTC
CTCCGTCCCCCACGCCCTCTCTCGTGCGCCTCTTCTCCCCCCCTCCTTCC
CCCCCTCCCTCCCCCCCGTCCTCCCTTGAAGGGTGGTTGGACCTGTGGGT
GTGCCGGTACTGGATCGAGGCCGAGAGGACGTACGAGGCGCGACATCCTC
CATCCTTGATCAGGAGGAGGGAGGAGCGCAGGGGGAGGGTGTTGTCGTTG
AGGGAGTGGAGGGAAGAGGAGGAAAGGGAGAGGGAGAGGAGAGGGGGAGG
AGGGAGGAGGGGATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAA
GGGAGGGCGGGCGGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCAT
TCAAGGGTACAGAGGAATGAAGATTCGGTAAGTGAGAAGAAGGAGGAAGA
GGGGGAAGGGGGGGAAATGGGGGGGGGGAAAGGGAAAGGAGGGCGGGAGG
GCGATATCCTCTTCAAAAGCAGGCAGAAAATTTGACCATTAATTTTCCCT
TCTTCTCATACGGACGACAGCCTCTGCAGGACCCAGGTATTAAGGAGGAG
GAGGAGGAGGAGGAGGAGGATGATGATGACGAGGAAGACCCCTACCTCGA
CGACGCCTACCCTCCCTCCCCTACTTCTTCCTTCCCTCCCTCTTCCTCCT
CCCCTTCCATGGGCGGATTGGAAGACCCGGCCCGGCTGGAGGCTCTCGCG
TACCGAGAGGAGGAGGAGGAAGAGGGGGAGGAGGAGCTGGAGGGTGGGAG
AGAGGAAGGGGAGGAAGAAGAGGACGCGGAAGGGAAGATGCTCATGTGGA
GGGCAGGAGAGGAGGGGAACGCGATGCTGCCCACCTTTGACTTGACTGGG
AGGGGGGAAAGCAGTGAAGAAGGAGGAGAGGGAAAAAGGGAGGGAGGGAG
GGAAGGGGAAGACGTGCCGCGCCGGCTTGTGAGGGAAGATTTGATTCTGT
TGAAAAATCTGTTGGAGGGAGGGAAGGAGGTAGGGCTGGAGGGAGGGAGG
GAAGAAGGGCAGTTCATGTCGTCGCCTCGTAGTGCCTCCTCTCTATTTGG
GCCGGGGGAGGAGAGAGGGAGGGACAAAAGCGAGGAGGAGGGAGAGGAGG
TGGCGAAGGAGGAGGAGGAGGAGGAGGAAGAGGTGAAGGAGGAGGAGGAG
GGAGGAAGAGGAGGAGGAGGAGGAACAGGAGGAGGAGGAGGAAGAATGGG
AGTATGTTTACGAGGACGAGTTGGAGGAAGGGACGAATTCCAGTACCTCG
CTGAAGAGGAAGAGGCATCCCTCTTTGCCATGAGAGAAAGAGACAACTCC

Coding sequence (CDS) from alignment at scaffold_61:84346..86195+

>mRNA_10666 ID=mRNA_10666|Name=jgi.p|Nanoce1779_2|379155|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_61:84346..86195+ (Nannochloropsis oceanica)
ATGAAGGCCTTGGACGGCTTGCTTGCCCCGGAGTGGAGGAGGAAGGGGGA
TATATGGAGGAGGGACGGAGGGGAGATGGAGGGGGAGAGAAGGAGGAGGG
AGGTGAGGGAGAAATGGGAGGAGGACCTGCACGGTGTGAGGCAGGAGGCA
GCCCGCCTGGCGGTGAGGGAGGGACAGAGGGAGAGGGAGATGGAGAGGGA
GGAGGAAACGCAGCAGCCGCAACAATCCTCATTCCCTTCCTCCTCCTCTT
CCTCCCCTCCCTCCACCTCGACCTTCCTCCAAGAACCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCGCCGTTTTCCAAAATCCCCTGCGTCAGATGCAGCT
TGTGCTTGGCCGCCCCCCCTCCGTCGAGGACCTCCCGTGGCTCGACGCCT
CGGGCCTGCTTTCTCCCCCTCCCTCCCTTCCTCCGTCCCCCACGCCCTCT
CTCGTGCGCCTCTTCTCCCCCCCTCCTTCCCCCCCTCCCTCCCCCCCGTC
CTCCCTTGAAGGGTGGTTGGACCTGTGGGTGTGCCGGTACTGGATCGAGG
CCGAGAGGACGTACGAGGCGCGACATCCTCCATCCTTGATCAGGAGGAGG
GAGGAGCGCAGGGGGAGGGTGTTGTCGTTGAGGGAGTGGAGGGAAGAGGA
GGAAAGGGAGAGGGAGAGGAGAGGGGGAGGAGGGAGGAGGGGATGGGGAG
GGTCCTGGAGGAGGGGGAGGGTGGGAAGAAGGGAGGGCGGGCGGGAAAGC
GAGATGAAGGCCGGAGGAGGGGCAACGCATTCAAGGGTACAGAGGAATGA
AGATTCGCCTCTGCAGGACCCAGGTATTAAGGAGGAGGAGGAGGAGGAGG
AGGAGGATGATGATGACGAGGAAGACCCCTACCTCGACGACGCCTACCCT
CCCTCCCCTACTTCTTCCTTCCCTCCCTCTTCCTCCTCCCCTTCCATGGG
CGGATTGGAAGACCCGCCTCTCTATTTGGGCCGGGGGAGGAGAGAGGGAG
GGACAAAAGCGAGGAGGAGGGAGAGGAGGTGGCGAAGGAGGAGGAGGAGG
AGGAGGAAGAGGTGAATGAAGGCCTTGGACGGCTTGCTTGCCCCGGAGTG
GAGGAGGAAGGGGGATATATGGAGGAGGGACGGAGGGGAGATGGAGGGGG
AGAGAAGGAGGAGGGAGGTGAGGGAGAAATGGGAGGAGGACCTGCACGGT
GTGAGGCAGGAGGCAGCCCGCCTGGCGGTGAGGGAGGGACAGAGGGAGAG
GGAGATGGAGAGGGAGGAGGAAACGCAGCAGCCGCAACAATCCTCATTCC
CTTCCTCCTCCTCTTCCTCCCCTCCCTCCACCTCGACCTTCCTCCAAGAA
CCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCGTTTTCCAAAATCCCCT
GCGTCAGATGCAGCTTGTGCTTGGCCGCCCCCCCTCCGTCGAGGACCTCC
CGTGGCTCGACGCCTCGGGCCTGCTTTCTCCCCCTCCCTCCCTTCCTCCG
TCCCCCACGCCCTCTCTCGTGCGCCTCTTCTCCCCCCCTCCTTCCCCCCC
TCCCTCCCCCCCGTCCTCCCTTGAAGGGTGGTTGGACCTGTGGGTGTGCC
GGTACTGGATCGAGGCCGAGAGGACGTACGAGGCGCGACATCCTCCATCC
TTGATCAGGAGGAGGGAGGAGCGCAGGGGGAGGGTGTTGTCGTTGAGGGA
GTGGAGGGAAGAGGAGGAAAGGGAGAGGGAGAGGAGAGGGGGAGGAGGGA
GGAGGGGATGGGGAGGGTCCTGGAGGAGGGGGAGGGTGGGAAGAAGGGAG
GGCGGGCGGGAAAGCGAGATGAAGGCCGGAGGAGGGGCAACGCATTCAAG
GGTACAGAGGAATGAAGATTCGCCTCTGCAGGACCCAGGTATTAAGGAGG
AGGAGGAGGAGGAGGAGGAGGATGATGATGACGAGGAAGACCCCTACCTC
GACGACGCCTACCCTCCCTCCCCTACTTCTTCCTTCCCTCCCTCTTCCTC
CTCCCCTTCCATGGGCGGATTGGAAGACCCGCCTCTCTATTTGGGCCGGG
GGAGGAGAGAGGGAGGGACAAAAGCGAGGAGGAGGGAGAGGAGGTGGCGA
AGGAGGAGGAGGAGGAGGAGGAAGAGGTGAATGAAGGCCTTGGACGGCTT
GCTTGCCCCGGAGTGGAGGAGGAAGGGGGATATATGGAGGAGGGACGGAG
GGGAGATGGAGGGGGAGAGAAGGAGGAGGGAGGTGAGGGAGAAATGGGAG
GAGGACCTGCACGGTGTGAGGCAGGAGGCAGCCCGCCTGGCGGTGAGGGA
GGGACAGAGGGAGAGGGAGATGGAGAGGGAGGAGGAAACGCAGCAGCCGC
AACAATCCTCATTCCCTTCCTCCTCCTCTTCCTCCCCTCCCTCCACCTCG
ACCTTCCTCCAAGAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCGT
TTTCCAAAATCCCCTGCGTCAGATGCAGCTTGTGCTTGGCCGCCCCCCCT
CCGTCGAGGACCTCCCGTGGCTCGACGCCTCGGGCCTGCTTTCTCCCCCT
CCCTCCCTTCCTCCGTCCCCCACGCCCTCTCTCGTGCGCCTCTTCTCCCC
CCCTCCTTCCCCCCCTCCCTCCCCCCCGTCCTCCCTTGAAGGGTGGTTGG
ACCTGTGGGTGTGCCGGTACTGGATCGAGGCCGAGAGGACGTACGAGGCG
CGACATCCTCCATCCTTGATCAGGAGGAGGGAGGAGCGCAGGGGGAGGGT
GTTGTCGTTGAGGGAGTGGAGGGAAGAGGAGGAAAGGGAGAGGGAGAGGA
GAGGGGGAGGAGGGAGGAGGGGATGGGGAGGGTCCTGGAGGAGGGGGAGG
GTGGGAAGAAGGGAGGGCGGGCGGGAAAGCGAGATGAAGGCCGGAGGAGG
GGCAACGCATTCAAGGGTACAGAGGAATGAAGATTCGCCTCTGCAGGACC
CAGGTATTAAGGAGGAGGAGGAGGAGGAGGAGGAGGATGATGATGACGAG
GAAGACCCCTACCTCGACGACGCCTACCCTCCCTCCCCTACTTCTTCCTT
CCCTCCCTCTTCCTCCTCCCCTTCCATGGGCGGATTGGAAGACCCGCCTC
TCTATTTGGGCCGGGGGAGGAGAGAGGGAGGGACAAAAGCGAGGAGGAGG
GAGAGGAGGTGGCGAAGGAGGAGGAGGAGGAGGAGGAAGAGGTGA

Synonyms

Publications