jgi.p|Nanoce1779_2|380645, mRNA_10626 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|380645
Unique Name	mRNA_10626
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1330
Alignment location	scaffold_62:58256..59585 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	380731
Track	FilteredModels2
ProteinId	380645

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:58256..59585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|380645	gene_10626	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|380645	mRNA_10626-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10626	CDS_10626	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:58256..59585+
coding sequence from alignment at scaffold_62:58256..59585+

mRNA sequence

>mRNA_10626 ID=mRNA_10626|Name=jgi.p|Nanoce1779_2|380645|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
AGAAGGAGGCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCATC
GGCAAGGAGCGGGCCGTCCGCGCCGTGGCAGAAGGGATAGGTTGGGAAGG
AGGGATGGAGGGAGGGAGGGAGGGAGGGAATGTCCTTCATTGTGTCTTTC
CCTCTTCACACTTCCACCTTATTCCCTCGCCATCTACCTCTCTCTCTCCC
TCCCTCCCCTCTTCCCTTTCTCCCTCCGCCCGTGGCTTTCTCTTGCCCAG
GCAGCAAGGTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCA
GGGGAGTGGGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGT
CAGGATGGCCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGG
GGAGGAAGGGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAG
CAACGGAAGCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGG
GGGGAGAGAGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGG
AGGGGGAGGAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACG
AGTACACTGCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGA
GGGGTATGCGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGG
GGAAGGAGGGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCA
GTCAAGCAACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGA
GGTAGGCGCCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGTGAGAGTG
AGGAGGAGGAGCAGCCGCGGCAGCAAGTCTACCTCATGGTCTTTAGATTT
CTAACCCACTTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCCTCTCTCCC
TCTATCAGGCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACG
ACTTCCCCTCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACC
CCCTGGATCAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTC
CGAGCACTCTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGC
CCAGGTCAGTTTTGGACCTCGTATTATTCCTTCTCTTCCTCCTTCTCTCC
CTCCTTTCGCCCCTCCTCTTCTCCCTCAAAAACACATCCACCTGCCGATG
AAACTTTAGAATAACGGTAGGTGAATAATCCACTTTTAAACCCTTTCTAC
CCCTTGCCTCCTTCCTTTTCTCTCTTCCTT

protein sequence of jgi.p|Nanoce1779_2|380645

>mRNA_10626-protein ID=mRNA_10626-protein|Name=jgi.p|Nanoce1779_2|380645|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MSFIVSFPLHTSTLFPRHLPLSLPPSPLPFLPPPVAFSCPGSKVYADKHK
ERTLRLAGEWDDGLYSSDARECSVRMAWLGRLRAEKMRAGGRKGGGRLKG
QEELQQEQRKQQDRGRTEEKEEEGGREVLGREQDGERTDKEGEEEEGKEG
REGGAKTSTLQQSLGMEGENERVEGYAWEEEEEEEEEGEEGKEGGEGGQD
DDDGEEAVKQLENEGEEEEEEEEEVGARRPVVGFRPTGESEEEEQPRQQV
YLMVFRFLTHFPPSLPPSLLPSLPLSGWSFTRNKKKKGKDDFPSSFTSLP
APPSSYTPWINEEEGAKLYFVPYSEHSSYTELRAFIRAIRPRSVLDLVLF
LLFLLLSLLSPLLFSLKNTSTCR*

mRNA from alignment at scaffold_62:58256..59585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10626 ID=mRNA_10626|Name=jgi.p|Nanoce1779_2|380645|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at scaffold_62:58256..59585+ (Nannochloropsis oceanica)
AGAAGGAGGCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCATC
GGCAAGGAGCGGGCCGTCCGCGCCGTGGCAGAAGGGATAGGTTGGGAAGG
AGGGATGGAGGGAGGGAGGGAGGGAGGGAATGTCCTTCATTGTGTCTTTC
CCTCTTCACACTTCCACCTTATTCCCTCGCCATCTACCTCTCTCTCTCCC
TCCCTCCCCTCTTCCCTTTCTCCCTCCGCCCGTGGCTTTCTCTTGCCCAG
GCAGCAAGGTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCA
GGGGAGTGGGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGT
CAGGATGGCCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGG
GGAGGAAGGGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAG
CAACGGAAGCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGG
GGGGAGAGAGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGG
AGGGGGAGGAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACG
AGTACACTGCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGA
GGGGTATGCGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGG
GGAAGGAGGGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCA
GTCAAGCAACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGA
GGTAGGCGCCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGTGAGAGTG
AGGAGGAGGAGCAGCCGCGGCAGCAAGTCTACCTCATGGTCTTTAGATTT
CTAACCCACTTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCCTCTCTCCC
TCTATCAGGCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACG
ACTTCCCCTCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACC
CCCTGGATCAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTC
CGAGCACTCTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGC
CCAGGTCAGTTTTGGACCTCGTATTATTCCTTCTCTTCCTCCTTCTCTCC
CTCCTTTCGCCCCTCCTCTTCTCCCTCAAAAACACATCCACCTGCCGATG
AAACTTTAGAATAACGGTAGGTGAATAATCCACTTTTAAACCCTTTCTAC
CCCTTGCCTCCTTCCTTTTCTCTCTTCCTT

Coding sequence (CDS) from alignment at scaffold_62:58256..59585+

>mRNA_10626 ID=mRNA_10626|Name=jgi.p|Nanoce1779_2|380645|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_62:58256..59585+ (Nannochloropsis oceanica)
ATGTCCTTCATTGTGTCTTTCCCTCTTCACACTTCCACCTTATTCCCTCG
CCATCTACCTCTCTCTCTCCCTCCCTCCCCTCTTCCCTTTCTCCCTCCGC
CCGTGGCTTTCTCTTGCCCAGGCAGCAAGGTATACGCGGACAAGCACAAG
GAGCGGACCTTACGCCTCGCAGGGGAGTGGGACGACGGCCTCTATTCCTC
CGATGCTAGGGAATGCTCCGTCAGGATGGCCTGGCTGGGGAGGCTGAGGG
CCGAGAAAATGAGGGCGGGGGGGAGGAAGGGGGGCGGAAGGCTGAAAGGG
CAGGAGGAGCTGCAACAGGAGCAACGGAAGCAACAGGATCGAGGGAGGAC
GGAGGAAAAGGAGGAGGAAGGGGGGAGAGAGGTGTTGGGGCGGGAACAGG
ATGGAGAGAGAACGGATAAGGAGGGGGAGGAGGAAGAAGGGAAAGAAGGG
AGAGAGGGAGGGGCAAAAACGAGTACACTGCAGCAGTCGCTTGGAATGGA
GGGGGAAAATGAGAGGGTTGAGGGGTATGCGTGGGAGGAGGAGGAGGAAG
AAGAGGAGGAGGGGGAGGAGGGGAAGGAGGGGGGGGAGGGGGGACAAGAC
GACGACGACGGGGAGGAGGCAGTCAAGCAACTTGAAAATGAGGGGGAAGA
GGAGGAGGAGGAGGAGGAGGAGGTAGGCGCCCGAAGGCCAGTCGTTGGCT
TTCGTCCCACGGGTGAGAGTGAGGAGGAGGAGCAGCCGCGGCAGCAAGTC
TACCTCATGGTCTTTAGATTTCTAACCCACTTCCCTCCCTCCCTCCCTCC
CTCTCTCCTCCCCTCTCTCCCTCTATCAGGCTGGAGCTTCACCCGGAACA
AGAAGAAGAAGGGCAAGGACGACTTCCCCTCCTCCTTTACCTCCCTCCCT
GCGCCCCCCTCCTCCTACACCCCCTGGATCAACGAGGAGGAAGGCGCCAA
GCTGTACTTTGTCCCCTACTCCGAGCACTCTTCTTACACTGAATTGAGGG
CATTTATCAGAGCGATACGGCCCAGGTCAGTTTTGGACCTCGTATTATTC
CTTCTCTTCCTCCTTCTCTCCCTCCTTTCGCCCCTCCTCTTCTCCCTCAA
AAACACATCCACCTGCCGATGA

Synonyms

Publications