jgi.p|Nanoce1779_2|584753, mRNA_3156 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584753
Unique NamemRNA_3156
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_7:800800..802047 +

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Properties
Property NameValue
TranscriptId584839
TrackFilteredModels2
ProteinId584753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:800800..802047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584753gene_3156Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584753mRNA_3156-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3156CDS_3156Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3156 ID=mRNA_3156|Name=jgi.p|Nanoce1779_2|584753|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
GGGGAGGTCAGACGGTAAGAGGAGCCAACTTTGTTTCCCCAAAAATCAGA
CAGGATAAGGCAAGCAAACACATAACTCGTGCATCAGTCTTCACGGCAAA
GTTTTCAGCGGGGCACGATGAAACGAGTAGGCAAAGCACAGAAACAAGCG
GTAGCTTCTTCTTCTCCGCTTTCGGACGAGTACGGCAGCCTTGCCCCCTC
CTTCCCATTTCGTAAACCTGACCTATCCCACTTCCTGCCTCTCACTATTG
TCCAACACCACCACTAGCACAGACGCGTCCTCCCTCTTTTCGTCGTGCAC
GTCCATCAGGAGGCCGAGCCGCCGCGTTCGCGTTTTAAGTGCAACGCCTT
GTTTGAGCGTCCGCATCACCATCGATATCTCAAGCACACGTCTGCACATA
AACGACACACCACCAGAGCCGCACCAGCACATCAATGGCAAGCCAAATGA
CGAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTTGGTGCGCGGTAGTTCA
GGCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTAGCATAGGACCCGGCAG
CGCCGCAGGTGGCCCGAGCATAGAGACAGTCCGCTTCGTAAACTCCATTA
AGCTCACCAACGTCGTGGCCACCGTGAACCTAGACTGCAAACCCGAGCTG
AAGAGCATTGCTCTGGGCGCTCGAAATGCGGAGTACAACCCTCGGCGGTT
TCCCGCTGTGATAATGCATATCAAGGATCCTAAGTCAGCGGCCCTTATCT
TCTCCTCTGGCAAAATGGTCGTGACAGGGACCCGTTCCGAAGAGGACTCA
TTGCGAGCCGCGCAGAAGTACACAAGTATCATGAGACGACTCAAGTGTGC
GGCTAATTGTACGGAATTCCGCGTGCAGAATATGACGGCTTCGTGTGATA
TTGGTTTCCCCATCCGCTTGGAGGGGTTAGTGATGGACCAGCCTCGTTTC
TGTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGGTCTACCGTATGTATAA
TCCTAAAATCGTTCTGTTGATATTTGTATCTGGGAGGATTATCATCACAG
GGGCTAAGACGAAGAGGGACATGGATGCAGCGCTGGAGAAGTTGCATCCG
ATTTTATTGGAGTACAGGAAGCTCCCTATGGCGCCTTCAATGGTGGTGGT
GGGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAAGGAGAAGGAGGGGGGG
GCATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGGTGAGGAGGAAATT
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protein sequence of jgi.p|Nanoce1779_2|584753

>mRNA_3156-protein ID=mRNA_3156-protein|Name=jgi.p|Nanoce1779_2|584753|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MASQMTSGGGFGEISPLVRGSSGAAGGGAGGESSIGPGSAAGGPSIETVR
FVNSIKLTNVVATVNLDCKPELKSIALGARNAEYNPRRFPAVIMHIKDPK
SAALIFSSGKMVVTGTRSEEDSLRAAQKYTSIMRRLKCAANCTEFRVQNM
TASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSG
RIIITGAKTKRDMDAALEKLHPILLEYRKLPMAPSMVVVGSGEEGGREGE
GEGGGGIGGGRGGKRKR*
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mRNA from alignment at scaffold_7:800800..802047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3156 ID=mRNA_3156|Name=jgi.p|Nanoce1779_2|584753|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_7:800800..802047+ (Nannochloropsis oceanica)
GGGGAGGTCAGACGGTAAGAGGAGCCAACTTTGTTTCCCCAAAAATCAGA
CAGGATAAGGCAAGCAAACACATAACTCGTGCATCAGTCTTCACGGCAAA
GTTTTCAGCGGGGCACGATGAAACGAGTAGGCAAAGCACAGAAACAAGCG
GTAGCTTCTTCTTCTCCGCTTTCGGACGAGTACGGCAGCCTTGCCCCCTC
CTTCCCATTTCGTAAACCTGACCTATCCCACTTCCTGCCTCTCACTATTG
TCCAACACCACCACTAGCACAGACGCGTCCTCCCTCTTTTCGTCGTGCAC
GTCCATCAGGAGGCCGAGCCGCCGCGTTCGCGTTTTAAGTGCAACGCCTT
GTTTGAGCGTCCGCATCACCATCGATATCTCAAGCACACGTCTGCACATA
AACGACACACCACCAGAGCCGCACCAGCACATCAATGGCAAGCCAAATGA
CGAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTTGGTGCGCGGTAGTTCA
GGCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTAGCATAGGACCCGGCAG
CGCCGCAGGTGGCCCGAGCATAGAGACAGTCCGCTTCGTAAACTCCATTA
AGCTCACCAACGTCGTGGCCACCGTGAACCTAGACTGCAAACCCGAGCTG
AAGAGCATTGCTCTGGGCGCTCGAAATGCGGAGTACAACCCTCGGCGGTT
TCCCGCTGTGATAATGCATATCAAGGATCCTAAGTCAGCGGCCCTTATCT
TCTCCTCTGGCAAAATGGTCGTGACAGGGACCCGTTCCGAAGAGGACTCA
TTGCGAGCCGCGCAGAAGTACACAAGTATCATGAGACGACTCAAGTGTGC
GGCTAATTGTACGGAATTCCGCGTGCAGAATATGACGGCTTCGTGTGATA
TTGGTTTCCCCATCCGCTTGGAGGGGTTAGTGATGGACCAGCCTCGTTTC
TGTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGGTCTACCGTATGTATAA
TCCTAAAATCGTTCTGTTGATATTTGTATCTGGGAGGATTATCATCACAG
GGGCTAAGACGAAGAGGGACATGGATGCAGCGCTGGAGAAGTTGCATCCG
ATTTTATTGGAGTACAGGAAGCTCCCTATGGCGCCTTCAATGGTGGTGGT
GGGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAAGGAGAAGGAGGGGGGG
GCATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGGTGAGGAGGAAATT
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Coding sequence (CDS) from alignment at scaffold_7:800800..802047+

>mRNA_3156 ID=mRNA_3156|Name=jgi.p|Nanoce1779_2|584753|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_7:800800..802047+ (Nannochloropsis oceanica)
ATGGCAAGCCAAATGACGAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTT
GGTGCGCGGTAGTTCAGGCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTA
GCATAGGACCCGGCAGCGCCGCAGGTGGCCCGAGCATAGAGACAGTCCGC
TTCGTAAACTCCATTAAGCTCACCAACGTCGTGGCCACCGTGAACCTAGA
CTGCAAACCCGAGCTGAAGAGCATTGCTCTGGGCGCTCGAAATGCGGAGT
ACAACCCTCGGCGGTTTCCCGCTGTGATAATGCATATCAAGGATCCTAAG
TCAGCGGCCCTTATCTTCTCCTCTGGCAAAATGGTCGTGACAGGGACCCG
TTCCGAAGAGGACTCATTGCGAGCCGCGCAGAAGTACACAAGTATCATGA
GACGACTCAAGTGTGCGGCTAATTGTACGGAATTCCGCGTGCAGAATATG
ACGGCTTCGTGTGATATTGGTTTCCCCATCCGCTTGGAGGGGTTAGTGAT
GGACCAGCCTCGTTTCTGTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGG
TCTACCGTATGTATAATCCTAAAATCGTTCTGTTGATATTTGTATCTGGG
AGGATTATCATCACAGGGGCTAAGACGAAGAGGGACATGGATGCAGCGCT
GGAGAAGTTGCATCCGATTTTATTGGAGTACAGGAAGCTCCCTATGGCGC
CTTCAATGGTGGTGGTGGGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAA
GGAGAAGGAGGGGGGGGCATTGGTGGAGGAAGGGGGGGAAAGAGGAAACG
GTGA
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Synonyms
Publications