jgi.p|Nanoce1779_2|634322, mRNA_11027 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634322
Unique Name	mRNA_11027
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1049
Alignment location	scaffold_70:10999..12360 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634408
Track	FilteredModels2
ProteinId	634322

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_70	supercontig	scaffold_70:10999..12360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634322	gene_11027	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634322	mRNA_11027-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11027	CDS_11027	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_70:10999..12360+
coding sequence from alignment at scaffold_70:10999..12360+

mRNA sequence

>mRNA_11027 ID=mRNA_11027|Name=jgi.p|Nanoce1779_2|634322|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp
ACAGGCGTTTCGAGAAAAGCTTCTTCCATAAAGTATAGGGTCAGTGTAAG
CTCCCGCCTGGCAGCAGCAGCATCATTACGGCCCCCTGCTGTCCGCCGTC
CGTATCTCAAGGCGGAGGCAAAGCACAAGAACAGAGCGTATGAACCATGA
TGGCCACGCATGACCTCTGGAAGGCCCGATGCGAGATGGGCAAGAAGAAA
GGTGTCATCACCCTGGCGGATGACGGTCTCTACTGGCAGCAGGACGGCTC
CTCCTCCCCTAGCAAGCTCCTCGCGTGGAACGACGTGAGCCAGCACATGA
TCAGCAAGCCCCCTCGTGCCATGGTACGTGTGGAGCTAGCTCGTGGAGGG
GACGTGCGTTTCGAGGTCTCTCCGCTGCCTTCTACAGCGGAAGGAGGAGG
GGGAGGGGAAGGAGGAGAGAAAGGGGGAGGGCAGCAGACAGCCCGGGGCT
TGTGTGAGGCGGCCAAGGAAGTGATTGGTGCTGCCCGCCGGCAGGCACGA
GCAGCTGTCGCCTCGTCCTCGTCTTCCTCTGCTGCTGGTACTCCTGCAAA
TGAAGGAGGGAAAGGGGGAAAGGGGGGAAAAGCAGACAGCAGCAGCAGCA
GCAGCAGCAGCGGGGGCGGCGGACGTAGTTCTGCAGGGTGGAGAAGCGAC
GAGTTGCAGCGGAAGGCAGCTGTAGCGAAAGGAAGGGCCGAAATTGCAAA
GACTACGGCCTCTCAACTGAGGGCGAGGATGGACGAGATGGAAAGGGAGA
CAAGGAGGAAGCTGCTGGCAGAGAACCCGGACTTGAGGGAGCAGCACACG
CAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACTTTTGGAACGCCCG
TCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGGGGAAAACAGACGG
GGCTACCCTCCAATATACTCGCGGAGATCGAGGCACGAGCCATGGAGGGA
GGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGTAGGAGGAGGAGGAGG
GGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGACGTTCAATTTTTG

protein sequence of jgi.p|Nanoce1779_2|634322

>mRNA_11027-protein ID=mRNA_11027-protein|Name=jgi.p|Nanoce1779_2|634322|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MMATHDLWKARCEMGKKKGVITLADDGLYWQQDGSSSPSKLLAWNDVSQH
MISKPPRAMVRVELARGGDVRFEVSPLPSTAEGGGGGEGGEKGGGQQTAR
GLCEAAKEVIGAARRQARAAVASSSSSSAAGTPANEGGKGGKGGKADSSS
SSSSSGGGGRSSAGWRSDELQRKAAVAKGRAEIAKTTASQLRARMDEMER
ETRRKLLAENPDLREQHTQMVGDGLIDEEDFWNARRKLLLDEEGRRRGKQ
TGLPSNILAEIEARAMEGGSEGGKEGGKGVGGGGGGGKTTICLKARDVQF
L

mRNA from alignment at scaffold_70:10999..12360+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11027 ID=mRNA_11027|Name=jgi.p|Nanoce1779_2|634322|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_70:10999..12360+ (Nannochloropsis oceanica)
ACAGGCGTTTCGAGAAAAGCTTCTTCCATAAAGTATAGGGTCAGTGTAAG
CTCCCGCCTGGCAGCAGCAGCATCATTACGGCCCCCTGCTGTCCGCCGTC
CGTATCTCAAGGCGGAGGCAAAGGTAGCAACCGCGCGCTGAGCACTGGAA
ATAGAAACCACTAACAGGAGGAGTAGAGTCTTGGTTTATTTGGTTCTTCA
TCATTTGCTCCAGCACAAGAACAGAGCGTATGAACCATGATGGCCACGCA
TGACCTCTGGAAGGCCCGATGCGAGATGGGCAAGAAGAAAGGTGTCATCA
CCCTGGCGGATGACGGTCTCTACTGGCAGCAGGACGGGTACGTGTGGGTA
TGAAAATATATCTCGCTGTCTCACGCATGCTCATTTTCCTCTGTCCCTAT
TTCCCTCGCTTCCCTCCGTCAGCTCCTCCTCCCCTAGCAAGCTCCTCGCG
TGGAACGACGTGAGCCAGCACATGATCAGCAAGCCCCCTCGTGCCATGGT
ACGTGTGGAGCTAGCTCGTGGAGGGGACGTGCGTTTCGAGGTCTCTCCGC
TGCCTTCTACAGCGGAAGGAGGAGGGGGAGGGGAAGGAGGAGAGAAAGGG
GGAGGGCAGCAGACAGCCCGGGGCTTGTGTGAGGCGGCCAAGGAAGTGAT
TGGTGCTGCCCGCCGGCAGGCACGAGCAGCTGTCGCCTCGTCCTCGTCTT
CCTCTGCTGCTGGTACTCCTGCAAATGAAGGAGGGAAAGGGGGAAAGGGG
GGAAAAGCAGACAGCAGCAGCAGCAGCAGCAGCAGCGGGGGCGGCGGACG
TAGTTCTGCAGGGTGGAGAAGCGACGAGTTGCAGCGGAAGGCAGCTGTAG
CGAAAGGAAGGGCCGAAATTGCAAAGACTACGGCCTCTCAACTGAGGGCG
AGGATGGACGAGATGGAAAGGGAGACAAGGAGGAAGCTGCTGGCAGAGAA
CCCGGACTTGAGGGAGCAGCACACGCAGGTAGGGAGGGAAGGAGGGAGGG
AGAGGGAGGGAAGGGGGAAGGCCACAAACCATGATAGATGCCCACAGATC
ACCCGCATTCATTACGACTTGGTGTCATATTCCTTCCTTCGCGCCCTTCC
CCTTACCCTCCTTCAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACT
TTTGGAACGCCCGTCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGG
GGAAAACAGACGGGGCTACCCTCCAATATACTCGCGGAGATCGAGGCACG
AGCCATGGAGGGAGGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGTAG
GAGGAGGAGGAGGGGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGAC
GTTCAATTTTTG

Coding sequence (CDS) from alignment at scaffold_70:10999..12360+

>mRNA_11027 ID=mRNA_11027|Name=jgi.p|Nanoce1779_2|634322|organism=Nannochloropsis oceanica|type=CDS|length=2709bp|location=Sequence derived from alignment at scaffold_70:10999..12360+ (Nannochloropsis oceanica)
ATGATGGCCACGCATGACCTCTGGAAGGCCCGATGCGAGATGGGCAAGAA
GAAAGGTGTCATCACCCTGGCGGATGACGGTCTCTACTGGCAGCAGGACG
GCTCCTCCTCCCCTAGCAAGCTCCTCGCGTGGAACGACGTGAGCCAGCAC
ATGATCAGCAAGCCCCCTCGTGCCATGGTACGTGTGGAGCTAGCTCGTGG
AGGGGACGTGCGTTTCGAGGTCTCTCCGCTGCCTTCTACAGCGGAAGGAG
GAGGGGGAGGGGAAGGAGGAGAGAAAGGGGGAGGGCAGCAGACAGCCCGG
GGCTTGTGTGAGGCGGCCAAGGAAGTGATTGGTGCTGCCCGCCGGCAGGC
ACGAGCAGCTGTCGCCTCGTCCTCGTCTTCCTCTGCTGCTGGTACTCCTG
CAAATGAAGGAGGGAAAGGGGGAAAGGGGGGAAAAGCAGACAGCAGCAGC
AGCAGCAGCAGCAGCGGGGGCGGCGGACGTAGTTCTGCAGGGTGGAGAAG
CGACGAGTTGCAGCGGAAGGCAGCTGTAGCGAAAGGAAGGGCCGAAATTG
CAAAGACTACGGCCTCTCAACTGAGGGCGAGGATGGACGAGATGGAAAGG
GAGACAAGGAGGAAGCTGCTGGCAGAGAACCCGGACTTGAGGGAGCAGCA
CACGCAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACTTTTGGAACG
CCCGTCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGGGGAAAACAG
ACGGGGCTACCCTCCAATATACTCGCGGAGATCGAGGCACGAGCCATGGA
GGGAGGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGTAGGAGGAGGAG
GAGGGGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGACGTTCAATTT
TTGATGATGGCCACGCATGACCTCTGGAAGGCCCGATGCGAGATGGGCAA
GAAGAAAGGTGTCATCACCCTGGCGGATGACGGTCTCTACTGGCAGCAGG
ACGGCTCCTCCTCCCCTAGCAAGCTCCTCGCGTGGAACGACGTGAGCCAG
CACATGATCAGCAAGCCCCCTCGTGCCATGGTACGTGTGGAGCTAGCTCG
TGGAGGGGACGTGCGTTTCGAGGTCTCTCCGCTGCCTTCTACAGCGGAAG
GAGGAGGGGGAGGGGAAGGAGGAGAGAAAGGGGGAGGGCAGCAGACAGCC
CGGGGCTTGTGTGAGGCGGCCAAGGAAGTGATTGGTGCTGCCCGCCGGCA
GGCACGAGCAGCTGTCGCCTCGTCCTCGTCTTCCTCTGCTGCTGGTACTC
CTGCAAATGAAGGAGGGAAAGGGGGAAAGGGGGGAAAAGCAGACAGCAGC
AGCAGCAGCAGCAGCAGCGGGGGCGGCGGACGTAGTTCTGCAGGGTGGAG
AAGCGACGAGTTGCAGCGGAAGGCAGCTGTAGCGAAAGGAAGGGCCGAAA
TTGCAAAGACTACGGCCTCTCAACTGAGGGCGAGGATGGACGAGATGGAA
AGGGAGACAAGGAGGAAGCTGCTGGCAGAGAACCCGGACTTGAGGGAGCA
GCACACGCAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACTTTTGGA
ACGCCCGTCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGGGGAAAA
CAGACGGGGCTACCCTCCAATATACTCGCGGAGATCGAGGCACGAGCCAT
GGAGGGAGGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGTAGGAGGAG
GAGGAGGGGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGACGTTCAA
TTTTTGATGATGGCCACGCATGACCTCTGGAAGGCCCGATGCGAGATGGG
CAAGAAGAAAGGTGTCATCACCCTGGCGGATGACGGTCTCTACTGGCAGC
AGGACGGCTCCTCCTCCCCTAGCAAGCTCCTCGCGTGGAACGACGTGAGC
CAGCACATGATCAGCAAGCCCCCTCGTGCCATGGTACGTGTGGAGCTAGC
TCGTGGAGGGGACGTGCGTTTCGAGGTCTCTCCGCTGCCTTCTACAGCGG
AAGGAGGAGGGGGAGGGGAAGGAGGAGAGAAAGGGGGAGGGCAGCAGACA
GCCCGGGGCTTGTGTGAGGCGGCCAAGGAAGTGATTGGTGCTGCCCGCCG
GCAGGCACGAGCAGCTGTCGCCTCGTCCTCGTCTTCCTCTGCTGCTGGTA
CTCCTGCAAATGAAGGAGGGAAAGGGGGAAAGGGGGGAAAAGCAGACAGC
AGCAGCAGCAGCAGCAGCAGCGGGGGCGGCGGACGTAGTTCTGCAGGGTG
GAGAAGCGACGAGTTGCAGCGGAAGGCAGCTGTAGCGAAAGGAAGGGCCG
AAATTGCAAAGACTACGGCCTCTCAACTGAGGGCGAGGATGGACGAGATG
GAAAGGGAGACAAGGAGGAAGCTGCTGGCAGAGAACCCGGACTTGAGGGA
GCAGCACACGCAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACTTTT
GGAACGCCCGTCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGGGGA
AAACAGACGGGGCTACCCTCCAATATACTCGCGGAGATCGAGGCACGAGC
CATGGAGGGAGGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGTAGGAG
GAGGAGGAGGGGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGACGTT
CAATTTTTG

Synonyms

Publications