jgi.p|Nanoce1779_2|624216, mRNA_10743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624216
Unique NamemRNA_10743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length843
Alignment locationscaffold_73:45096..46295 -

Link to JBrowse

Properties
Property NameValue
TranscriptId624302
TrackFilteredModels2
ProteinId624216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_73supercontigscaffold_73:45096..46295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624216gene_10743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624216mRNA_10743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10743CDS_10743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10743 ID=mRNA_10743|Name=jgi.p|Nanoce1779_2|624216|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
ATGTGCGGAACGAAAAGGACCTATGGCGCAGTCTGTGCCTTGCAGGGCAC
AATCAAAGCCATCTCTGTCGCTCGCCGGGTCATGGAGAAGTCGGTGCACA
GCGTCTTGGTGGGCAAGGGTGCCAGTACCTTTGCCAGAGAGCAAGGAGGA
TTTGAATGGGAGGAGGTGTTGAGCCCCGAGGCCCGGGAGGGGTGGATGAA
GTGGAAGGAGGAAGAGGAGGAGGCAGCGAAGAACAGATTGGATGGAAAAG
GAGACGACGGGTCTGCAGCCATGCCCACAGCCGCACCAACAGCCGCAGTG
TCAGCAGCTCCCATCGACGATAGCTCACAGGACACTCCTCAGCATGATAC
CATAGGCCTCCTTGTCATGGATGCTCAGGGACACCTGGCCGCGGGCACCT
CTACCTCCGGGTGGCGCTTTAAGCACCCTGGGCGCGTGGGCGATTCTCCC
TTGGTGGGTAGTGGCTTGTACGCCGACAATTCTGTTGGTGCTGCCGTTGC
CACGGGAGACGGTGAAGAGATCATGCGAGTCTGTCTCTCCTTCCTCGTTG
TCGAAAAAATGCGGGAGGGCCTCCCCCCCGCCGTTGCCTGTCAAGCCGGC
ATCAAACGGTTGAAGGAGGTGGTGGAGGGAGTGAGGGAGGGAGAGGGAGG
GAGGAAGACGGGGATGCATGAGGCCTTGACCGTGGCAGTGCTGGCGATGG
ATAAGGAGGGGAGGGTGGGGGCGGCGTCCACGCTGGGCGAGAACAATGAG
CATAGAGGAAGACCGGCTTTTCCGTTTGTGGTGTGGCGGGAGGGGGAGGG
GGCGGCGTGGGTGGAGGAGGCGAATGATGAGGGCACGGACTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|624216

>mRNA_10743-protein ID=mRNA_10743-protein|Name=jgi.p|Nanoce1779_2|624216|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MCGTKRTYGAVCALQGTIKAISVARRVMEKSVHSVLVGKGASTFAREQGG
FEWEEVLSPEAREGWMKWKEEEEEAAKNRLDGKGDDGSAAMPTAAPTAAV
SAAPIDDSSQDTPQHDTIGLLVMDAQGHLAAGTSTSGWRFKHPGRVGDSP
LVGSGLYADNSVGAAVATGDGEEIMRVCLSFLVVEKMREGLPPAVACQAG
IKRLKEVVEGVREGEGGRKTGMHEALTVAVLAMDKEGRVGAASTLGENNE
HRGRPAFPFVVWREGEGAAWVEEANDEGTD*
back to top

mRNA from alignment at scaffold_73:45096..46295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10743 ID=mRNA_10743|Name=jgi.p|Nanoce1779_2|624216|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_73:45096..46295- (Nannochloropsis oceanica)
ATGTGCGGAACGAAAAGGACCTATGGCGCAGTCTGTGCCTTGCAGGTGAG
GGGGTGACGGATGGGGGGAACGAGGGAGGAGCGGCCGGACGTTGCAGCGA
CGCAATAGTCAAAGCCGTGTCTGACATCTGCCAATGTCTTATCTCCCTAC
CTCTTGGATTTTGTGATAACCATGTCCACCTTTCCTCCTTCCTTTCTTTT
CTCCCTCCTCCCTTTCTTGTTGTGCAGGGCACAATCAAAGCCATCTCTGT
CGCTCGCCGGGTCATGGAGAAGTCGGTGCACAGCGTCTTGGTGGGCAAGG
GTGCCAGTACCTTTGCCAGAGAGCAAGGAGGATTTGAATGGGAGGAGGTG
TTGAGCCCCGAGGCCCGGGAGGGGTGGATGAAGTGGAAGGAGGAAGAGGA
GGAGGCAGCGAAGAACAGATTGGATGGAAAAGGAGACGACGGGTCTGCAG
CCATGCCCACAGCCGCACCAACAGCCGCAGTGTCAGCAGCTCCCATCGAC
GATAGCTCACAGGACACTCCTCAGCATGATACCATAGGCCTCCTTGTCAT
GGATGCTCAGGGACACCTGGCCGCGGGCACCTCTACCTCCGGGTGGCGCT
TTAAGCACCCTGGTATGTGCGTGGATGAGTCTGTCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTTTCCCGTCATTACTTCATTCTACCGTTGTC
ATGATCGACAGTGGATTCAGTTGGGGTTACTTCCTGTCTTGCCCTTCCTT
CCTCCCTCCCTCCCTCCCTCTCTCCCTCTCGTCTCAGGGCGCGTGGGCGA
TTCTCCCTTGGTGGGTAGTGGCTTGTACGCCGACAATTCTGTTGGTGCTG
CCGTTGCCACGGGAGACGGTGAAGAGATCATGCGAGTCTGTCTCTCCTTC
CTCGTTGTCGAAAAAATGCGGGAGGGCCTCCCCCCCGCCGTTGCCTGTCA
AGCCGGCATCAAACGGTTGAAGGAGGTGGTGGAGGGAGTGAGGGAGGGAG
AGGGAGGGAGGAAGACGGGGATGCATGAGGCCTTGACCGTGGCAGTGCTG
GCGATGGATAAGGAGGGGAGGGTGGGGGCGGCGTCCACGCTGGGCGAGAA
CAATGAGCATAGAGGAAGACCGGCTTTTCCGTTTGTGGTGTGGCGGGAGG
GGGAGGGGGCGGCGTGGGTGGAGGAGGCGAATGATGAGGGCACGGACTGA
back to top

Coding sequence (CDS) from alignment at scaffold_73:45096..46295-

>mRNA_10743 ID=mRNA_10743|Name=jgi.p|Nanoce1779_2|624216|organism=Nannochloropsis oceanica|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold_73:45096..46295- (Nannochloropsis oceanica)
GGCGCGTGGGCGATTCTCCCTTGGTGGGTAGTGGCTTGTACGCCGACAAT
TCTGTTGGTGCTGCCGTTGCCACGGGAGACGGTGAAGAGATCATGCGAGT
CTGTCTCTCCTTCCTCGTTGTCGAAAAAATGCGGGAGGGCCTCCCCCCCG
CCGTTGCCTGTCAAGCCGGCATCAAACGGTTGAAGGAGGTGGTGGAGGGA
GTGAGGGAGGGAGAGGGAGGGAGGAAGACGGGGATGCATGAGGCCTTGAC
CGTGGCAGTGCTGGCGATGGATAAGGAGGGGAGGGTGGGGGCGGCGTCCA
CGCTGGGCGAGAACAATGAGCATAGAGGAAGACCGGCTTTTCCGTTTGTG
GTGTGGCGGGAGGGGGAGGGGGCGGCGTGGGTGGAGGAGGCGAATGATGA
GGGCACGGACTGAGGCACAATCAAAGCCATCTCTGTCGCTCGCCGGGTCA
TGGAGAAGTCGGTGCACAGCGTCTTGGTGGGCAAGGGTGCCAGTACCTTT
GCCAGAGAGCAAGGAGGATTTGAATGGGAGGAGGTGTTGAGCCCCGAGGC
CCGGGAGGGGTGGATGAAGTGGAAGGAGGAAGAGGAGGAGGCAGCGAAGA
ACAGATTGGATGGAAAAGGAGACGACGGGTCTGCAGCCATGCCCACAGCC
GCACCAACAGCCGCAGTGTCAGCAGCTCCCATCGACGATAGCTCACAGGA
CACTCCTCAGCATGATACCATAGGCCTCCTTGTCATGGATGCTCAGGGAC
ACCTGGCCGCGGGCACCTCTACCTCCGGGTGGCGCTTTAAGCACCCTGAT
GTGCGGAACGAAAAGGACCTATGGCGCAGTCTGTGCCTTGCAGGGCGCGT
GGGCGATTCTCCCTTGGTGGGTAGTGGCTTGTACGCCGACAATTCTGTTG
GTGCTGCCGTTGCCACGGGAGACGGTGAAGAGATCATGCGAGTCTGTCTC
TCCTTCCTCGTTGTCGAAAAAATGCGGGAGGGCCTCCCCCCCGCCGTTGC
CTGTCAAGCCGGCATCAAACGGTTGAAGGAGGTGGTGGAGGGAGTGAGGG
AGGGAGAGGGAGGGAGGAAGACGGGGATGCATGAGGCCTTGACCGTGGCA
GTGCTGGCGATGGATAAGGAGGGGAGGGTGGGGGCGGCGTCCACGCTGGG
CGAGAACAATGAGCATAGAGGAAGACCGGCTTTTCCGTTTGTGGTGTGGC
GGGAGGGGGAGGGGGCGGCGTGGGTGGAGGAGGCGAATGATGAGGGCACG
GACTGAGGCACAATCAAAGCCATCTCTGTCGCTCGCCGGGTCATGGAGAA
GTCGGTGCACAGCGTCTTGGTGGGCAAGGGTGCCAGTACCTTTGCCAGAG
AGCAAGGAGGATTTGAATGGGAGGAGGTGTTGAGCCCCGAGGCCCGGGAG
GGGTGGATGAAGTGGAAGGAGGAAGAGGAGGAGGCAGCGAAGAACAGATT
GGATGGAAAAGGAGACGACGGGTCTGCAGCCATGCCCACAGCCGCACCAA
CAGCCGCAGTGTCAGCAGCTCCCATCGACGATAGCTCACAGGACACTCCT
CAGCATGATACCATAGGCCTCCTTGTCATGGATGCTCAGGGACACCTGGC
CGCGGGCACCTCTACCTCCGGGTGGCGCTTTAAGCACCCTGATGTGCGGA
ACGAAAAGGACCTATGGCGCAGTCTGTGCCTTGCAGGGCGCGTGGGCGAT
TCTCCCTTGGTGGGTAGTGGCTTGTACGCCGACAATTCTGTTGGTGCTGC
CGTTGCCACGGGAGACGGTGAAGAGATCATGCGAGTCTGTCTCTCCTTCC
TCGTTGTCGAAAAAATGCGGGAGGGCCTCCCCCCCGCCGTTGCCTGTCAA
GCCGGCATCAAACGGTTGAAGGAGGTGGTGGAGGGAGTGAGGGAGGGAGA
GGGAGGGAGGAAGACGGGGATGCATGAGGCCTTGACCGTGGCAGTGCTGG
CGATGGATAAGGAGGGGAGGGTGGGGGCGGCGTCCACGCTGGGCGAGAAC
AATGAGCATAGAGGAAGACCGGCTTTTCCGTTTGTGGTGTGGCGGGAGGG
GGAGGGGGCGGCGTGGGTGGAGGAGGCGAATGATGAGGGCACGGACTGAG
GCACAATCAAAGCCATCTCTGTCGCTCGCCGGGTCATGGAGAAGTCGGTG
CACAGCGTCTTGGTGGGCAAGGGTGCCAGTACCTTTGCCAGAGAGCAAGG
AGGATTTGAATGGGAGGAGGTGTTGAGCCCCGAGGCCCGGGAGGGGTGGA
TGAAGTGGAAGGAGGAAGAGGAGGAGGCAGCGAAGAACAGATTGGATGGA
AAAGGAGACGACGGGTCTGCAGCCATGCCCACAGCCGCACCAACAGCCGC
AGTGTCAGCAGCTCCCATCGACGATAGCTCACAGGACACTCCTCAGCATG
ATACCATAGGCCTCCTTGTCATGGATGCTCAGGGACACCTGGCCGCGGGC
ACCTCTACCTCCGGGTGGCGCTTTAAGCACCCTGATGTGCGGAACGAAAA
GGACCTATGGCGCAGTCTGTGCCTTGCAG
back to top
Synonyms
Publications