jgi.p|Nanoce1779_2|585816, mRNA_3912 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585816
Unique NamemRNA_3912
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length842
Alignment locationscaffold_8:380581..383592 -

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Properties
Property NameValue
TranscriptId585902
TrackFilteredModels2
ProteinId585816
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:380581..383592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585816gene_3912Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585816mRNA_3912-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3912CDS_3912Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3912 ID=mRNA_3912|Name=jgi.p|Nanoce1779_2|585816|organism=Nannochloropsis oceanica|type=mRNA|length=842bp
GAGGGAGGGAGGGAGGGAGGGAGGGATGAGATGCCTCCCTCCCTCCTTCC
TTCCCTCTCCCGCTCCTCTATTTTCCTTTCCGTCTCCTCCAAATGCCGTC
GTATAAACCCCTTGTCCAGCCGGTCTATCCTCTCCTCTGCCTCCCGTGCC
AGCTCTACCCAATCATTGCCATCGTGACTCCGCATATAATCAAAAATACA
AGCCCTTGTCTTTGTATACGCTTCCAAGCACGCCAAGCACCTGTGGGTAT
CCTCCTTCATATTCGCCCAAAACACCTCATCCCGCACCCCTTCCCCATAC
AAGAATGCCCGAAGCCAAATCTCGCAGACCTCAGGGTAGTCACACCACCT
ATTTCCCGACTCGCCCGCCACCGCCAGGTACTCGATTGCTCCCTCTTCAT
CCTCCTCTCCCGGAGCCTCGTGCGATCCGCCGCTTTCGTTGTTATCTCCC
AAGTCCCATCCAATCCTATCCTCTTTCCCCTTCTTTTCGTCCTCTATCCC
CTCTACATCCAAAACCGGGGGAAAGGCATCGAGAACTTCGTCCTCCTCCT
CATCCTGCTCTCCCCGCTGGCGCTGGAGCTGCAGCCGTGCGGCTTTAACG
TTGTCGTCCGTCTTCCGAACTGTCGTGCGCCCCACCTCCACCACCTCTAC
GGAGGAGTCATCGTCATCGCTCTCCCCGTAGTCAATCTCGTCGTCCGTAT
CAAGGATGTCGATCATTTCCGCGGTGTCCTTGTGATGCTCCTCCATCTCC
TCTTTGCCGCTGCTGCTACTGCTGCTGCTGCTAGTGAGCTCCATTTCCAT
TTTGGATCCTATCCCCTGCCTCAGTGGCAGGCCGGATGAGTG
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protein sequence of jgi.p|Nanoce1779_2|585816

>mRNA_3912-protein ID=mRNA_3912-protein|Name=jgi.p|Nanoce1779_2|585816|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MPSYKPLVQPVYPLLCLPCQLYPIIAIVTPHIIKNTSPCLCIRFQARQAP
VGILLHIRPKHLIPHPFPIQECPKPNLADLRVVTPPISRLARHRQVLDCS
LFILLSRSLVRSAAFVVISQVPSNPILFPLLFVLYPLYIQNRGKGIENFV
LLLILLSPLALELQPCGFNVVVRLPNCRAPHLHHLYGGVIVIALPVVNLV
VRIKDVDHFRGVLVMLLHLLFAAAATAAAASELHFHFGSYPLPQWQAG*
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mRNA from alignment at scaffold_8:380581..383592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3912 ID=mRNA_3912|Name=jgi.p|Nanoce1779_2|585816|organism=Nannochloropsis oceanica|type=mRNA|length=3012bp|location=Sequence derived from alignment at scaffold_8:380581..383592- (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGGGAGGTGGAGATGAACGGGGTCTTGTCCTTACTTG
TCCCACGGCCCTTGATAAGCACCTCGCGGGCGAAAAGCCACCAAGCAGAT
GTGGGTGGCGCGGTTGCCATTATTCCTTCTCTGTCAGCTTTCTGTTGTCG
GGCTAGAAGGTCGAGGAGGAGGGCGAGAAACTGCGAGAGAAAGGAGTGCG
AGTCACCGCCAGGTGTGTTGGAGAGGAAGCTGGTGCGAAGCATGTCTTTG
AGTACTTGGTTAGCTCCGCGCCAAATCCCACGAAGCCAAGAGGAAGGAAG
ATAGGCGAGGATAGCTTTCCAATTCAACAAGGAGGGCGAGGAAAAAGAGG
AGCAATGAGGAAGAGAGGAGGGGGAGGAAGCACCCAGGAGAAGGAGCCGA
TGGAGGGCTGTGGTGATTTCAACTTCGTCTATGAGGAGGATAGGGATGAC
AGTTGCTAGAGCTGTGCCCGGAGGTGCACCTCCCACATTTCTAATTGCAA
AGGGGTTCCTGCTGCTGGTGCTGCTGCTGTTGCTGTTGCTGCTACTGCTA
TTGGTCGGGGTGAGGTTGGTGTCCGTGCGGATGGTCAAAAGAGAGGAGGA
GGAAGAAGACGATGTGGAGTAGGAAGAGGAAGAGGCTTGGACGAGACGTT
GGAGGAGTGAAGTGAAAGCAGATGTTTGGTCGTCACATGCCTGATTCAGC
TGTCGCAATGCTTGAGAATGACCAACACCCTTGGATTGCGACACCGGGTA
CAGAGCAGCTTGAAACTTGAACAGATCGTCGCACAGCAAGGGAGGAAGGG
AGGACAGTGGATGAATGCGGGTTAACTCATGCATTAACCTCCCACACAAT
AAATCTGATGACAACATCGGCCTTGAGATTCTTCCACTTAGTCTGCTGCT
CGCGGGATTAGCCCCATCCCAAGGGGAACAGGCATTTCCTTCTCTCAATT
TACTGTGACAGTGACTGCCACTACTACTGCTGCTGCTGCTACTGCTGCTG
CCACATAAGGTATCGTAACATCCTCTCCCATCGTCCCAAGACCCAGTGAT
AGACTCATCGATCAGTCTAATTACTTCCAAGCGGTGCTGCTCCAAAATTA
AATGCACGCAATCGCGAGCGATACTCTCAAAAACTGGACTCGAGAGAGTC
CCCACAGGGGCAAGCGCTGCAACTACTACAGGCGCCCACTTCTGACTGCT
CTCCAACGGCCAAGTCTTGGAAGAAGCCTGACAAGGATTGTACGCATCTT
CTAACACACGACACATGCACTTTTCGAGAAATCGACGGGTGGTTCCCGAG
GATGAGGGAGGCAAGGACGAAATTATCTGCGACAAGCGCTGCAAAGCCAA
GTTGGTGCTATTATCTTGGGCGTGGCGGAGGGAGCGGAGAAAGGCGGGAA
GCAGATTAAGGAGGGATTTGAAGGGCCCTCCTACGTTGCATTGGCCTTGT
CGGTGGGCGAGGGATGAGATGAGGGGATACAGCCAGTCACGGACGTCCAA
AGCTAGTCCTTCACAGTGAGACCACGCTTGGTCTTTCAATTTGATTAACA
GAAGACGCAAACAGTCCACAGCAATCTGAGCCGTAGCTGCAGAATAGGGG
GGGGGGTGAGAGAATGTTCCTCCTCCACCTCCCTTTCCTCCTACTCCATC
TTCAGTCTGTTCCAGCGGCGCACAGCACGCACGGGCGTGGGCGAAGACAG
TGTCGAGCAGCAAGGGGAACTCGGACGATATCCACTCTGCTATAGCATCG
TCATCTTCCAACAAGTCTAGAACTGTCTTTAAAGCCTTCCATCTATGTTC
ATTTCTCCTGCTACTGTTGGTGTTTTTGCTGCTGCTGCTCCCTCCTGCCT
CCTGCGATTGTGAATCAAGATACTCCTCCTCTAACACCCGCACCCACTCC
CGCATCACATCATCGACCCCTCCTTCACCCATCAACATCTCCTTGTTGAC
TTTCCCCATGATTTTGGCCATCCTCCCCGCCCAGGCCCTAATGGAATCGC
GGTTATGCGTCATCAAGGTATACACGCCCTGTGCTCTCCTCCCCTTCAGC
ATCTCCTCGTTCATTTTCACATCCCCTCCTACCTTTTCCAGGACCGCCAC
CAAAATTTCCTCGAAAACCTTATCAGCCAAACATATCTTACAATGGGTCA
ACATGTCCAACAACGCAAACATTAAGCCATCCCTCTCCTCCTCATCGAGC
ATTCCTCCCTCCCTCCTTCCTTCCCTCTCCCGCTCCTCTATTTTCCTTTC
CGTCTCCTCCAAATGCCGTCGTATAAACCCCTTGTCCAGCCGGTCTATCC
TCTCCTCTGCCTCCCGTGCCAGCTCTACCCAATCATTGCCATCGTGACTC
CGCATATAATCAAAAATACAAGCCCTTGTCTTTGTATACGCTTCCAAGCA
CGCCAAGCACCTGTGGGTATCCTCCTTCATATTCGCCCAAAACACCTCAT
CCCGCACCCCTTCCCCATACAAGAATGCCCGAAGCCAAATCTCGCAGACC
TCAGGGTAGTCACACCACCTATTTCCCGACTCGCCCGCCACCGCCAGGTA
CTCGATTGCTCCCTCTTCATCCTCCTCTCCCGGAGCCTCGTGCGATCCGC
CGCTTTCGTTGTTATCTCCCAAGTCCCATCCAATCCTATCCTCTTTCCCC
TTCTTTTCGTCCTCTATCCCCTCTACATCCAAAACCGGGGGAAAGGCATC
GAGAACTTCGTCCTCCTCCTCATCCTGCTCTCCCCGCTGGCGCTGGAGCT
GCAGCCGTGCGGCTTTAACGTTGTCGTCCGTCTTCCGAACTGTCGTGCGC
CCCACCTCCACCACCTCTACGGAGGAGTCATCGTCATCGCTCTCCCCGTA
GTCAATCTCGTCGTCCGTATCAAGGATGTCGATCATTTCCGCGGTGTCCT
TGTGATGCTCCTCCATCTCCTCTTTGCCGCTGCTGCTACTGCTGCTGCTG
CTAGTGAGCTCCATTTCCATTTTGGATCCTATCCCCTGCCTCAGTGGCAG
GCCGGATGAGTG
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Coding sequence (CDS) from alignment at scaffold_8:380581..383592-

>mRNA_3912 ID=mRNA_3912|Name=jgi.p|Nanoce1779_2|585816|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_8:380581..383592- (Nannochloropsis oceanica)
ATGCCGTCGTATAAACCCCTTGTCCAGCCGGTCTATCCTCTCCTCTGCCT
CCCGTGCCAGCTCTACCCAATCATTGCCATCGTGACTCCGCATATAATCA
AAAATACAAGCCCTTGTCTTTGTATACGCTTCCAAGCACGCCAAGCACCT
GTGGGTATCCTCCTTCATATTCGCCCAAAACACCTCATCCCGCACCCCTT
CCCCATACAAGAATGCCCGAAGCCAAATCTCGCAGACCTCAGGGTAGTCA
CACCACCTATTTCCCGACTCGCCCGCCACCGCCAGGTACTCGATTGCTCC
CTCTTCATCCTCCTCTCCCGGAGCCTCGTGCGATCCGCCGCTTTCGTTGT
TATCTCCCAAGTCCCATCCAATCCTATCCTCTTTCCCCTTCTTTTCGTCC
TCTATCCCCTCTACATCCAAAACCGGGGGAAAGGCATCGAGAACTTCGTC
CTCCTCCTCATCCTGCTCTCCCCGCTGGCGCTGGAGCTGCAGCCGTGCGG
CTTTAACGTTGTCGTCCGTCTTCCGAACTGTCGTGCGCCCCACCTCCACC
ACCTCTACGGAGGAGTCATCGTCATCGCTCTCCCCGTAGTCAATCTCGTC
GTCCGTATCAAGGATGTCGATCATTTCCGCGGTGTCCTTGTGATGCTCCT
CCATCTCCTCTTTGCCGCTGCTGCTACTGCTGCTGCTGCTAGTGAGCTCC
ATTTCCATTTTGGATCCTATCCCCTGCCTCAGTGGCAGGCCGGATGA
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Synonyms
Publications