jgi.p|Nanoce1779_2|670358, mRNA_4195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670358
Unique NamemRNA_4195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length585
Alignment locationscaffold_8:1098361..1099731 +

Link to JBrowse

Properties
Property NameValue
TranscriptId670444
TrackFilteredModels2
ProteinId670358
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1098361..1099731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670358gene_4195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670358mRNA_4195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4195CDS_4195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4195 ID=mRNA_4195|Name=jgi.p|Nanoce1779_2|670358|organism=Nannochloropsis oceanica|type=mRNA|length=585bp
ATGGGGAAGGTCATCCGAACGTGCCGAAAGGGCAAAGGGGGTATCTTCAA
GTCCCACATCAAGCTGAACAAGAACCCGGTCAAGCTCCGCAAGCTTGATT
ACGCGGAGAAAACACGGGTAGGGAGGGAGGAAGGGAGGGAGGGGGAGAGG
GTGATGCGCGAGGTGGTCAAGATAGTGATCGGGACTTGGGAGATAGCTTG
CCATTTAGCGTACATCAAGGGCGTGGTGAAGGAGATTGTGCACGAGTCCG
GACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACCGCTTC
AAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCTGGCCA
GTTCATCTTCGCGGGGAAGAAGGCCTCGTTGGTGATCGGCAATGTGCTGC
CTCTGTCGCAGATCCCTGAGGGAACGGTCGTTTCCAATGTGGAGGCCAGC
CCCGGGGACCGAGGCACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGAT
AGTTGCTCAGGACGAGGACCGCGGAACGACCAAGATCCGTCTGCCGTCAG
GAGCCAAGAAGACCGTATCTTCCTCGGCCCGAGGG
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protein sequence of jgi.p|Nanoce1779_2|670358

>mRNA_4195-protein ID=mRNA_4195-protein|Name=jgi.p|Nanoce1779_2|670358|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKTRVGREEGREGER
VMREVVKIVIGTWEIACHLAYIKGVVKEIVHESGRGAPVARVQFKNAYRF
KRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEAS
PGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARG
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mRNA from alignment at scaffold_8:1098361..1099731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4195 ID=mRNA_4195|Name=jgi.p|Nanoce1779_2|670358|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at scaffold_8:1098361..1099731+ (Nannochloropsis oceanica)
ATGGGGAAGGTCATCCGAAGTAAGTGCTGGCTCGCAGAGGAGGGAGAGGA
GGGAGGGAGGGAGGGAGGAAGGGGGATGAGGGCGTGGCATGGGGCTTCGT
GTTGCCTCTTTGCAGTTTCTACTTGCTGCCCCTGGTGTGTGTGTGCAAGA
GAAATTCCACGATGTTTGTCATGGTTCATAGCGATGGGAAATTTGTATAG
AGACTTCCGGGAACAAACGGATGCCCGGGCTCTGATCATTGCTCTCGTGT
CTTACCCCATCCCTCCTACACTCTTCCCCCCTCTCCTCCCCACAGCGTGC
CGAAAGGGCAAAGGGGGTATCTTCAAGTCCCACATCAAGCTGAACAAGAA
CCCGGTCAAGCTCCGCAAGCTTGATTACGCGGAGAAAACACGGGTAGGGA
GGGAGGAAGGGAGGGAGGGGGAGAGGGTGATGCGCGAGGTGGTCAAGATA
GTGATCGGGACTTGGGAGATAGCTTGCCATTTAGCGTGGAAAGTATGAAA
ATGAATTTTGTAAATGGAAGCAATCTTGGGCAGGTGGGAGAAAGGAGCAT
GACATGGACGTCGAGAAACTCACATCTTCCTCCCTGTCCGTCCCTCCCTC
CCTCCTTTTCCCAGGTACATCAAGGGCGTGGTGAAGGAGATTGTGCACGA
GTCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACC
GCTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCT
GGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGAGCTCAAAGTGT
GAATGCTCCGTGCATGTATGATGACATGCTTCATGGGCTTCGTGAAAAGA
TCTTTCAAACGTTCTGGACAATGACGGTAGCCAACATTCTTGGTCTCCTC
TCTCAGCACCAGTCACTCACCACCTCCCTCCCTTCCTCCCTCCCTCCTTT
CGTGACCCACAGGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTTGGTG
ATCGGCAATGTGCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCGTTTC
CAATGTGGAGGCCAGCCCCGGGGACCGAGGTAGGGAGGGAGGGAGGAACG
GGGAGGAAAGGGGAGGGAGGTTGGGAGTGAGTCTCCTATCCACCTCTGTC
GAGAAGGCTGTGTAGGTCCATGCTTCTCCTCCGGCGTTCACCCACTCACT
CCTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCTAAGG
CACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGATAGTTGCTCAGGACG
AGGACCGCGGAACGACCAAGATCCGTCTGCCGTCAGGAGCCAAGAAGACC
GTATCTTCCTCGGCCCGAGGG
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Coding sequence (CDS) from alignment at scaffold_8:1098361..1099731+

>mRNA_4195 ID=mRNA_4195|Name=jgi.p|Nanoce1779_2|670358|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_8:1098361..1099731+ (Nannochloropsis oceanica)
ATGGGGAAGGTCATCCGAACGTGCCGAAAGGGCAAAGGGGGTATCTTCAA
GTCCCACATCAAGCTGAACAAGAACCCGGTCAAGCTCCGCAAGCTTGATT
ACGCGGAGAAAACACGGGTAGGGAGGGAGGAAGGGAGGGAGGGGGAGAGG
GTGATGCGCGAGGTGGTCAAGATAGTGATCGGGACTTGGGAGATAGCTTG
CCATTTAGCGTACATCAAGGGCGTGGTGAAGGAGATTGTGCACGAGTCCG
GACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACCGCTTC
AAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCTGGCCA
GTTCATCTTCGCGGGGAAGAAGGCCTCGTTGGTGATCGGCAATGTGCTGC
CTCTGTCGCAGATCCCTGAGGGAACGGTCGTTTCCAATGTGGAGGCCAGC
CCCGGGGACCGAGGCACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGAT
AGTTGCTCAGGACGAGGACCGCGGAACGACCAAGATCCGTCTGCCGTCAG
GAGCCAAGAAGACCGTATCTTCCTCGGCCCGAGGGATGGGGAAGGTCATC
CGAACGTGCCGAAAGGGCAAAGGGGGTATCTTCAAGTCCCACATCAAGCT
GAACAAGAACCCGGTCAAGCTCCGCAAGCTTGATTACGCGGAGAAAACAC
GGGTAGGGAGGGAGGAAGGGAGGGAGGGGGAGAGGGTGATGCGCGAGGTG
GTCAAGATAGTGATCGGGACTTGGGAGATAGCTTGCCATTTAGCGTACAT
CAAGGGCGTGGTGAAGGAGATTGTGCACGAGTCCGGACGTGGCGCCCCCG
TGGCCCGCGTGCAATTCAAGAACGCCTACCGCTTCAAGCGCGACACGGAG
AGCTTCGTCGCCGTGGAGGGCTTGTACTCTGGCCAGTTCATCTTCGCGGG
GAAGAAGGCCTCGTTGGTGATCGGCAATGTGCTGCCTCTGTCGCAGATCC
CTGAGGGAACGGTCGTTTCCAATGTGGAGGCCAGCCCCGGGGACCGAGGC
ACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGATAGTTGCTCAGGACGA
GGACCGCGGAACGACCAAGATCCGTCTGCCGTCAGGAGCCAAGAAGACCG
TATCTTCCTCGGCCCGAGGGATGGGGAAGGTCATCCGAACGTGCCGAAAG
GGCAAAGGGGGTATCTTCAAGTCCCACATCAAGCTGAACAAGAACCCGGT
CAAGCTCCGCAAGCTTGATTACGCGGAGAAAACACGGGTAGGGAGGGAGG
AAGGGAGGGAGGGGGAGAGGGTGATGCGCGAGGTGGTCAAGATAGTGATC
GGGACTTGGGAGATAGCTTGCCATTTAGCGTACATCAAGGGCGTGGTGAA
GGAGATTGTGCACGAGTCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAAT
TCAAGAACGCCTACCGCTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTG
GAGGGCTTGTACTCTGGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTT
GGTGATCGGCAATGTGCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCG
TTTCCAATGTGGAGGCCAGCCCCGGGGACCGAGGCACTTTCGCCCGTACC
TCCGGTGGGTACGCCGTGATAGTTGCTCAGGACGAGGACCGCGGAACGAC
CAAGATCCGTCTGCCGTCAGGAGCCAAGAAGACCGTATCTTCCTCGGCCC
GAGGGATGGGGAAGGTCATCCGAACGTGCCGAAAGGGCAAAGGGGGTATC
TTCAAGTCCCACATCAAGCTGAACAAGAACCCGGTCAAGCTCCGCAAGCT
TGATTACGCGGAGAAAACACGGGTAGGGAGGGAGGAAGGGAGGGAGGGGG
AGAGGGTGATGCGCGAGGTGGTCAAGATAGTGATCGGGACTTGGGAGATA
GCTTGCCATTTAGCGTACATCAAGGGCGTGGTGAAGGAGATTGTGCACGA
GTCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACC
GCTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCT
GGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTTGGTGATCGGCAATGT
GCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCGTTTCCAATGTGGAGG
CCAGCCCCGGGGACCGAGGCACTTTCGCCCGTACCTCCGGTGGGTACGCC
GTGATAGTTGCTCAGGACGAGGACCGCGGAACGACCAAGATCCGTCTGCC
GTCAGGAGCCAAGAAGACCGTATCTTCCTCGGCCCGAGGGATGGGGAAGG
TCATCCGAACGTGCCGAAAGGGCAAAGGGGGTATCTTCAAGTCCCACATC
AAGCTGAACAAGAACCCGGTCAAGCTCCGCAAGCTTGATTACGCGGAGAA
AACACGGGTAGGGAGGGAGGAAGGGAGGGAGGGGGAGAGGGTGATGCGCG
AGGTGGTCAAGATAGTGATCGGGACTTGGGAGATAGCTTGCCATTTAGCG
TACATCAAGGGCGTGGTGAAGGAGATTGTGCACGAGTCCGGACGTGGCGC
CCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACCGCTTCAAGCGCGACA
CGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCTGGCCAGTTCATCTTC
GCGGGGAAGAAGGCCTCGTTGGTGATCGGCAATGTGCTGCCTCTGTCGCA
GATCCCTGAGGGAACGGTCGTTTCCAATGTGGAGGCCAGCCCCGGGGACC
GAGGCACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGATAGTTGCTCAG
GACGAGGACCGCGGAACGACCAAGATCCGTCTGCCGTCAGGAGCCAAGAA
GACCGTATCTTCCTCGGCCCGAGGG
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Synonyms
Publications