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Properties
| Property Name | Value |
|---|
| TranscriptId | 572230 |
| Track | FilteredModels2 |
| ProteinId | 572144 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:595932..598802 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1458 ID=mRNA_1458|Name=jgi.p|Nanoce1779_2|572144|organism=Nannochloropsis oceanica|type=mRNA|length=2631bp
ACAGGGCCTTTAAAATAAACCCTCCATGAACGCTCGAACCACTGCGTCGT
CTGCCGGCTTTGTACTACCCTCTCCTTCCTGTTGTCCCCCCAAACTCCAT
CGACTGTCTCTCCCCCATGGTGGATACAACTCCGCCTCCTACTCTGCACC
ACGCCCGCAGTCCTTGTCATGGCAAAGTCCTGCTCCTTTCGCACACTGGC
CCACGACGGCAACAAGGAGAAGCGGGAGCCTGAGGAGCGTGGGAAATTCT
AATAACACCTCGTCCAGAGAGCCCTGGCTGCCTTTCTTGGCATTGATGGG
CGTGGAATCTGCATTGCTAGGCCCCTTTTTGGATGATTTTCATGGACGCA
CGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGTTGATGTCGGTAGCCTG
CATATTCTCGGGAGTGCTGCATGGGTGAGTTATGTGTTTGTTGGTTCGGG
AGGTTGTTTCGTGTGTGTGTCTCAGTCCGAATCGCCCTAAGAGTTATTTT
CAAATGACAGAGCGCCTTCTGTCTCCCTTAAATCCTAACCGTTCCTATCC
ATTTCATGACCTCCTACTCTCAGGTACCCTTCCTGTTCATGTTGGCGGGC
ATCATTATGGGTTCCCTGACCGTCCTTCTTGACAAATGGTTTAAAACGCC
TACCGACAAATTACGGCCCCCGCCGCAAGAGGTGCTCAAAGCCATCTCCC
TCTTCAGCTTCCAGTACTATATTTCGGGGCTCCTGTCAGGGATCTACCTG
CTGGATCCCTTTCAAATTAATGTCGTGGTGTTGGGTCTGGCCACGATTTG
TTACCTTCGCTTTGATCGAACGTTGGCTGGCTTGGCGGTGGGTGCGGCAA
CAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCCTGACAGGTTTGACAAAT
TTGTACCATTATACGTCACCCGACTATTATAGCGTCCCTTCATGGATTCC
CTGGGTTTACTTGTGTGGTGGACCCCCGGTGTGTAACCTTGCTCGTGCTC
AATGGCTCGCTTTACAAGGGAGGGATAAAGAAGAGATTAGTGGCCGGGGA
AGATGACGTGAAAATGAACCCGGCTCACAGACAAATAGACATTTTACACA
AATAATAATGGTTAAGGAGATGATGTTCTAGCTATGAATGTCTGTTGGTT
GTCTTTTCTTTTTGGCGTTGCGTGAAGGGCTGCAATCAAGGCCTTTCTTG
ACTATCCGTGCTCCATCCACGTCTCCCACCTCCACGATTGCCTACCCCAC
GCAGCGTCTCTCTCTCCTCCATCACTGGAGTCACTTATTCTGAAATTTCA
ATATCTCGTTCTAGGTACCAATGGGCGTATCTAGAGCGTGGCTTGTCGAA
AGCACGCACGCGAGACTCTAGATCTCCTCCCATCCTCATCATCATCCCAT
CGTCACACCACTGCACGCACTGGCGCATCCATTTTATTAACACACACTTG
AATGTCTTAAACAAAGAACACAGAAAGGATGAGCTTTTTACGGGCAGGTA
GACGGGGGCTGCTGTCTTTTGGCAGCGTCCCGGTGGTAGGCCTGGCCGTT
GCCGCCGAGCAGCAACAGCATCAACAGGAGCAGCACCACCAGGCATCCCG
ATGCGATGCCGCGGCCGCGGACGCCAGTAGCATTTCCGTGGAGATGCCAG
AGCTGGTAAAACAGGCGGCAGAAGAGCGGCGAAGGCAATCGCAGCTCAAG
AACCCGGGGTCATTTGAGAAAATCATTGAAGAGGGGAAGAGATTGTCGTC
CGTCGACTGCTTTGAGGGCTTTCGACTGGAGATCCAGAAGATGGTGACAC
CACATTTCTACATGGCACATTCCTTCATGCTGGGCGTCAAGCTTCCTCAC
GTGGATACGAGTGCGCTGTACGATTTCTCGACGCATGTTGTGCTACCGGG
GAACCAGCTGCTAATGGCGCGCTTGGGCCATGGAGGCTCGATGGACGGCA
GGATCCACTTTGGTCTGGGCGACAAGACTTTAGTTAAGATGATTGCCAGC
TTGCAGCCCAACCCCGCCAAGGATACGTTTCAAATGGACGCCGAGCACCA
CGGCACGGATCACTCCCTTACTTTCCGGATGACCAAAGGCCCCCAAGTAT
ATGCCTCCTACCTGCAAAGCATCACGCCTTCCTTGGCATTGGGTGGGGAT
ACACTGTTTGATTTCTCGGAGGGTGGTGGGGTGTTCAGCTTTGGCGGGAA
GTACACGGGGGGGGATTGGACCGGAGTGGCGATGCTCGCACAATATGGGC
AGATTTGCTTGGTGCAGTATATTAAACATGTGAGTCCAGGAAGGATGGCT
TTGGTGGCCGATTTGGTGGTGAACCCATTGACGTTGGACAGCCAGACTGT
GCTAGGCGCGGAGGTGAACATGAAACAGTCGCGGTTTGTGACGACGGTGG
ATAACGGTGGGAAGATCTCGGCATTGCTTGAGTCGAGGGTCGTCCCGAAT
GCGGTAACATTGTTGCTGTCTGGCGAGGTGGACCAGGCCAAAGATGAGTA
CAAATTCGGATATGGGTTTCAACTAAACTTGTGAGGAGGAGAGATGGAAG
GGGGGGAGGGAGAAAGTGAGGGAAAGGGGAGAGGGGATGCGCGAAGCGAG
AACAAAGTCAGTAAAGGAACAAAATGTCGTG back to topprotein sequence of jgi.p|Nanoce1779_2|572144 >mRNA_1458-protein ID=mRNA_1458-protein|Name=jgi.p|Nanoce1779_2|572144|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MSFLRAGRRGLLSFGSVPVVGLAVAAEQQQHQQEQHHQASRCDAAAADAS
SISVEMPELVKQAAEERRRQSQLKNPGSFEKIIEEGKRLSSVDCFEGFRL
EIQKMVTPHFYMAHSFMLGVKLPHVDTSALYDFSTHVVLPGNQLLMARLG
HGGSMDGRIHFGLGDKTLVKMIASLQPNPAKDTFQMDAEHHGTDHSLTFR
MTKGPQVYASYLQSITPSLALGGDTLFDFSEGGGVFSFGGKYTGGDWTGV
AMLAQYGQICLVQYIKHVSPGRMALVADLVVNPLTLDSQTVLGAEVNMKQ
SRFVTTVDNGGKISALLESRVVPNAVTLLLSGEVDQAKDEYKFGYGFQLN
L* back to topmRNA from alignment at scaffold_1:595932..598802- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1458 ID=mRNA_1458|Name=jgi.p|Nanoce1779_2|572144|organism=Nannochloropsis oceanica|type=mRNA|length=2871bp|location=Sequence derived from alignment at scaffold_1:595932..598802- (Nannochloropsis oceanica)
ACAGGGCCTTTAAAATAAACCCTCCATGAACGCTCGAACCACTGCGTCGT
CTGCCGGCTTTGTACTACCCTCTCCTTCCTGTTGTCCCCCCAAACTCCAT
CGACTGTCTCTCCCCCATGGTGGATACAACTCCGCCTCCTACTCTGCACC
ACGCCCGCAGTCCTTGTCATGGCAAAGTCCTGCTCCTTTCGCACACTGGC
CCACGACGGCAACAAGGAGAAGCGGGAGCCTGAGGAGCGTGGGAAATTCT
AATAACACCTCGTCCAGAGAGCCCTGGCTGCCTTTCTTGGCATTGATGGG
CGTGGAATCTGCATTGCTAGGCCCCTTTTTGGATGATTTTCATGGACGCA
CGGGTGTCCTTGTCTATCGTGAGCCGGTGAGCGTTGATGTCGGTAGCCTG
CATATTCTCGGGAGTGCTGCATGGGTGAGTTATGTGTTTGTTGGTTCGGG
AGGTTGTTTCGTGTGTGTGTCTCAGTCCGAATCGCCCTAAGAGTTATTTT
CAAATGACAGAGCGCCTTCTGTCTCCCTTAAATCCTAACCGTTCCTATCC
ATTTCATGACCTCCTACTCTCAGGTACCCTTCCTGTTCATGTTGGCGGGC
ATCATTATGGGTTCCCTGACCGTCCTTCTTGACAAATGGTTTAAAACGCC
TACCGACAAATTACGGCCCCCGCCGCAAGAGGTGCTCAAAGCCATCTCCC
TCTTCAGCTTCCAGTACTATATTTCGGGGCTCCTGTCAGGGATCTACCTG
CTGGATCCCTTTCAAATTAATGTCGTGGTGTTGGGTCTGGCCACGATTTG
TTACCTTCGCTTTGATCGAACGTTGGCTGGCTTGGCGGTGGGTGCGGCAA
CAGCGGTCGGTGGTCCGGTTATTGAGCTGGCCCTGACAGGTTTGACAAAT
TTGTACCATTATACGTCACCCGACTATTATAGCGTCCCTTCATGGATTCC
CTGGGTTTACTTGTGTGGTGGACCCCCGGTGTGTAACCTTGCTCGTGCTC
AATGGCTCGCTTTACAAGGGAGGGATAAAGAAGAGATTAGTGGCCGGGGA
AGATGACGTGAAAATGAACCCGGCTCACAGACAAATAGACATTTTACACA
AATAATAATGGTTAAGGAGATGATGTTCTAGCTATGAATGTCTGTTGGTT
GTCTTTTCTTTTTGGCGTTGCGTGAAGGGCTGCAATCAAGGCCTTTCTTG
ACTATCCGTGCTCCATCCACGTCTCCCACCTCCACGATTGCCTACCCCAC
GCAGCGTCTCTCTCTCCTCCATCACTGGAGTCACTTATTCTGAAATTTCA
ATATCTCGTTCTAGGTACCAATGGGCGTATCTAGAGCGTGGCTTGTCGAA
AGCACGCACGCGAGACTCTAGATCTCCTCCCATCCTCATCATCATCCCAT
CGTCACACCACTGCACGCACTGGCGCATCCATTTTATTAACACACACTTG
AATGTCTTAAACAAAGAACACAGAAAGGATGAGCTTTTTACGGGCAGGTA
GACGGGGGCTGCTGTCTTTTGGCAGCGTCCCGGTGGTAGGCCTGGCCGTT
GCCGCCGAGCAGCAACAGCATCAACAGGAGCAGCACCACCAGGCATCCCG
ATGCGATGCCGCGGCCGCGGACGCCAGTAGCATTTCCGTGGAGATGCCAG
AGCTGGTAAAACAGGCGGCAGAAGAGCGGCGAAGGCAATCGCAGCTCAAG
AACCCGGGGTCATTTGAGAAAATCATTGAAGAGGGGAAGAGATTGTCGTC
CGTCGACTGCTTTGAGGGCTTTCGACTGGAGATCCAGAAGATGGTGACAC
CACATTTCTACATGGCACATTCCTTCATGCTGGGCGTCAAGCTTCCTCAC
GTGGATACGAGTGCGCTGTACGATTTCTCGACGCATGTTGTGCTACCGGG
GAACCAGCTGCTAATGGCGCGCTTGGGCCATGGAGGCTCGATGGACGGCA
GGTGCGTGCTGGGCTCCATCACGGGAGAGGAAGATATGATTGAATGATTA
GATGGATGTATTTCGAAAGGATGGAGGAGAAAATCTTTAGGCTTGTGAAC
GTACAGTCTTGCCGGGGGGGGGAGGCGCACTCTTTTCTCCTGTTAGATGG
CGCAACACGGGGTATCGTCCACGAATTACGATAGCATCAAACAAACACAA
TCTTCCCTTTTCTCTAACCACCTACCTCGCATATTCGATAGGATCCACTT
TGGTCTGGGCGACAAGACTTTAGTTAAGATGATTGCCAGCTTGCAGCCCA
ACCCCGCCAAGGATACGTTTCAAATGGACGCCGAGCACCACGGCACGGAT
CACTCCCTTACTTTCCGGATGACCAAAGGCCCCCAAGTATATGCCTCCTA
CCTGCAAAGCATCACGCCTTCCTTGGCATTGGGTGGGGATACACTGTTTG
ATTTCTCGGAGGGTGGTGGGGTGTTCAGCTTTGGCGGGAAGTACACGGGG
GGGGATTGGACCGGAGTGGCGATGCTCGCACAATATGGGCAGATTTGCTT
GGTGCAGTATATTAAACATGTGAGTCCAGGAAGGATGGCTTTGGTGGCCG
ATTTGGTGGTGAACCCATTGACGTTGGACAGCCAGACTGTGCTAGGCGCG
GAGGTGAACATGAAACAGTCGCGGTTTGTGACGACGGTGGATAACGGTGG
GAAGATCTCGGCATTGCTTGAGTCGAGGGTCGTCCCGAATGCGGTAACAT
TGTTGCTGTCTGGCGAGGTGGACCAGGCCAAAGATGAGTACAAATTCGGA
TATGGGTTTCAACTAAACTTGTGAGGAGGAGAGATGGAAGGGGGGGAGGG
AGAAAGTGAGGGAAAGGGGAGAGGGGATGCGCGAAGCGAGAACAAAGTCA
GTAAAGGAACAAAATGTCGTG back to topCoding sequence (CDS) from alignment at scaffold_1:595932..598802- >mRNA_1458 ID=mRNA_1458|Name=jgi.p|Nanoce1779_2|572144|organism=Nannochloropsis oceanica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_1:595932..598802- (Nannochloropsis oceanica)
GATCCACTTTGGTCTGGGCGACAAGACTTTAGTTAAGATGATTGCCAGCT
TGCAGCCCAACCCCGCCAAGGATACGTTTCAAATGGACGCCGAGCACCAC
GGCACGGATCACTCCCTTACTTTCCGGATGACCAAAGGCCCCCAAGTATA
TGCCTCCTACCTGCAAAGCATCACGCCTTCCTTGGCATTGGGTGGGGATA
CACTGTTTGATTTCTCGGAGGGTGGTGGGGTGTTCAGCTTTGGCGGGAAG
TACACGGGGGGGGATTGGACCGGAGTGGCGATGCTCGCACAATATGGGCA
GATTTGCTTGGTGCAGTATATTAAACATGTGAGTCCAGGAAGGATGGCTT
TGGTGGCCGATTTGGTGGTGAACCCATTGACGTTGGACAGCCAGACTGTG
CTAGGCGCGGAGGTGAACATGAAACAGTCGCGGTTTGTGACGACGGTGGA
TAACGGTGGGAAGATCTCGGCATTGCTTGAGTCGAGGGTCGTCCCGAATG
CGGTAACATTGTTGCTGTCTGGCGAGGTGGACCAGGCCAAAGATGAGTAC
AAATTCGGATATGGGTTTCAACTAAACTTGTGAATGAGCTTTTTACGGGC
AGGTAGACGGGGGCTGCTGTCTTTTGGCAGCGTCCCGGTGGTAGGCCTGG
CCGTTGCCGCCGAGCAGCAACAGCATCAACAGGAGCAGCACCACCAGGCA
TCCCGATGCGATGCCGCGGCCGCGGACGCCAGTAGCATTTCCGTGGAGAT
GCCAGAGCTGGTAAAACAGGCGGCAGAAGAGCGGCGAAGGCAATCGCAGC
TCAAGAACCCGGGGTCATTTGAGAAAATCATTGAAGAGGGGAAGAGATTG
TCGTCCGTCGACTGCTTTGAGGGCTTTCGACTGGAGATCCAGAAGATGGT
GACACCACATTTCTACATGGCACATTCCTTCATGCTGGGCGTCAAGCTTC
CTCACGTGGATACGAGTGCGCTGTACGATTTCTCGACGCATGTTGTGCTA
CCGGGGAACCAGCTGCTAATGGCGCGCTTGGGCCATGGAGGCTCGATGGA
CGGCAGGATCCACTTTGGTCTGGGCGACAAGACTTTAGTTAAGATGATTG
CCAGCTTGCAGCCCAACCCCGCCAAGGATACGTTTCAAATGGACGCCGAG
CACCACGGCACGGATCACTCCCTTACTTTCCGGATGACCAAAGGCCCCCA
AGTATATGCCTCCTACCTGCAAAGCATCACGCCTTCCTTGGCATTGGGTG
GGGATACACTGTTTGATTTCTCGGAGGGTGGTGGGGTGTTCAGCTTTGGC
GGGAAGTACACGGGGGGGGATTGGACCGGAGTGGCGATGCTCGCACAATA
TGGGCAGATTTGCTTGGTGCAGTATATTAAACATGTGAGTCCAGGAAGGA
TGGCTTTGGTGGCCGATTTGGTGGTGAACCCATTGACGTTGGACAGCCAG
ACTGTGCTAGGCGCGGAGGTGAACATGAAACAGTCGCGGTTTGTGACGAC
GGTGGATAACGGTGGGAAGATCTCGGCATTGCTTGAGTCGAGGGTCGTCC
CGAATGCGGTAACATTGTTGCTGTCTGGCGAGGTGGACCAGGCCAAAGAT
GAGTACAAATTCGGATATGGGTTTCAACTAAACTTGTGAATGAGCTTTTT
ACGGGCAGGTAGACGGGGGCTGCTGTCTTTTGGCAGCGTCCCGGTGGTAG
GCCTGGCCGTTGCCGCCGAGCAGCAACAGCATCAACAGGAGCAGCACCAC
CAGGCATCCCGATGCGATGCCGCGGCCGCGGACGCCAGTAGCATTTCCGT
GGAGATGCCAGAGCTGGTAAAACAGGCGGCAGAAGAGCGGCGAAGGCAAT
CGCAGCTCAAGAACCCGGGGTCATTTGAGAAAATCATTGAAGAGGGGAAG
AGATTGTCGTCCGTCGACTGCTTTGAGGGCTTTCGACTGGAGATCCAGAA
GATGGTGACACCACATTTCTACATGGCACATTCCTTCATGCTGGGCGTCA
AGCTTCCTCACGTGGATACGAGTGCGCTGTACGATTTCTCGACGCATGTT
GTGCTACCGGGGAACCAGCTGCTAATGGCGCGCTTGGGCCATGGAGGCTC
GATGGACGGCAG back to top
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