jgi.p|Nanoce1779_2|572711, mRNA_1565 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572711
Unique Name	mRNA_1565
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1384
Alignment location	scaffold_1:964956..966497 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572797
Track	FilteredModels2
ProteinId	572711

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:964956..966497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572711	gene_1565	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572711	mRNA_1565-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1565	CDS_1565	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:964956..966497+
coding sequence from alignment at scaffold_1:964956..966497+

mRNA sequence

>mRNA_1565 ID=mRNA_1565|Name=jgi.p|Nanoce1779_2|572711|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp
GGGGGGTGGGGTGGGGGGGGGAGGTCCGGCGACCGAAGGGCACGGGCCAC
GGCCGGAACTGAGAAGCCCACAGGGGTGCAGCAAGGAGGTATTTGTCGTG
CCAACCAGTGACGGATCAAGATGTCGAATGGCTTCGTATGGCGCGGAGAA
ATTCAGGGAAGTGCGACAGGCGTGTGGGATTGAGGATGATGATTTTTTGT
TGTCCGTGGGAATCAGGCAGGTGATTGGATCCTTGTTGCTGGGGGATCTG
TTTGGACTGAGCGAGCAGGTCTCGGAGGGGAAGAGTGGAAGCTTCTTTTA
CTGGTCACAGGATGGACGGTACATGGTGAAGACGATCTCCCGCGCCGAGT
CATGTCAAATGCGAAAAATACTGCAATCTTACCACGAGCACATGACGGCG
CACCCCGAAAACCTCCTCATGCGTATCCTCGGCCTATATCGCCTCAAGCT
CAACAACGAGAAGTGGGACCTGATAATCATCGAGAACATTTTCACCACAT
CCCACGGCATCCATGAGCGCTTTGACCTCAAGGGCAGCACGTACGAACGT
ACTGTGGGTGCCCGCGCTAGGTCTCAGCCCGGGGTTGTTATGAAGGACAA
AGATTTTCTGGAATTAGGTCGGACAATCCACGTGGGTCCGGAGCTGGCAG
AGAAGCTCAAGGCACAGATTGCGATTGACTCGCAGTTTTTGGCCCGGAAT
GGTATCATTGACTACTCATTTCTGGTGGGTGTACATTATGTTGATAGGGG
GATACCGGAGGATATATGGGTGGCGCAGCAGCAGGAGGGGTTGGAGAAGA
TGTGGGGGGAGTTTCAGCAGTTGCAGCAGAAGCACGGTTTCTTCAAAAAG
GACTTTGGAATGGCCGAGTTTGTGCATTGGGCGTACCAGCACCATCATTT
TGATAAGGAGGATTCATTGAGCTTGTTGGACGCACAAGCGGGGACCGGAG
GTTTTTACGGAGGACCGGGAGGGCCGTTGAGTGCCCGGAGTACGAGCATG
CGCAGGGGGTTCAACGCGTTGTCGCCCACCGCTGCTTCTGCTTCGTCTCC
CTCGTCTTCAGTACCTGTGACATTAAATGCAAGGCAGGGGATCAGAGCGT
ATCGGACATTGCAAGACCAAATAGAAGGAGAGCCGGATCAGATCCTATTT
TTTGGGATCATTGATTTGCTTGTGCCATTCGACTCGAGGAAGAGAGGAGA
ATATTTGGTGAAGAGTTTTTACCACGTGGGAAAGCATGACTTTTCGGTGA
TCCCTCCAGAGGACTACCGGAAGAGGTTTGTCCAGTTTATGTGGAATGCG
ATTAGATAGGGAGGGGAACGAGCAGGGCGGAAGGGCAGGGATGGGGTTTG
CGAAGGAGAGAAGAGAGAGGGAGGGAGAGAGGGA

protein sequence of jgi.p|Nanoce1779_2|572711

>mRNA_1565-protein ID=mRNA_1565-protein|Name=jgi.p|Nanoce1779_2|572711|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MASYGAEKFREVRQACGIEDDDFLLSVGIRQVIGSLLLGDLFGLSEQVSE
GKSGSFFYWSQDGRYMVKTISRAESCQMRKILQSYHEHMTAHPENLLMRI
LGLYRLKLNNEKWDLIIIENIFTTSHGIHERFDLKGSTYERTVGARARSQ
PGVVMKDKDFLELGRTIHVGPELAEKLKAQIAIDSQFLARNGIIDYSFLV
GVHYVDRGIPEDIWVAQQQEGLEKMWGEFQQLQQKHGFFKKDFGMAEFVH
WAYQHHHFDKEDSLSLLDAQAGTGGFYGGPGGPLSARSTSMRRGFNALSP
TAASASSPSSSVPVTLNARQGIRAYRTLQDQIEGEPDQILFFGIIDLLVP
FDSRKRGEYLVKSFYHVGKHDFSVIPPEDYRKRFVQFMWNAIR*

mRNA from alignment at scaffold_1:964956..966497+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1565 ID=mRNA_1565|Name=jgi.p|Nanoce1779_2|572711|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_1:964956..966497+ (Nannochloropsis oceanica)
GGGGGGTGGGGTGGGGGGGGGAGGTCCGGCGACCGAAGGGCACGGGCCAC
GGCCGGAACTGAGAAGCCCACAGGGGTGCAGCAAGGAGGTATTTGTCGTG
CCAACCAGTGACGGATCAAGATGTCGAATGGCTTCGTATGGCGCGGAGAA
ATTCAGGGAAGTGCGACAGGCGTGTGGGATTGAGGATGATGATTTTTTGT
TGTCCGTGGGAATCAGGCAGGTGATTGGATCCTTGTTGCTGGGGGATCTG
TTTGGACTGAGCGAGCAGGTCTCGGAGGGGAAGAGTGGAAGCTTCTTTTA
CTGGTCACAGGATGGACGGTACATGGTGAAGGTAAGATGGAAAGGAGGGG
GGGAATGGAGGAGGGAAGAAAAAAATGTTGCGTTTCTTCTCATCCGCTAT
AGCACTTGGCAAGTTCCCGGCTCCACTTTGTTCTGAACTCCTCCCTCCTT
CCCTTTCTCCCTCCCTCCTTCCTCCCTTACCTCCTACAGACGATCTCCCG
CGCCGAGTCATGTCAAATGCGAAAAATACTGCAATCTTACCACGAGCACA
TGACGGCGCACCCCGAAAACCTCCTCATGCGTATCCTCGGCCTATATCGC
CTCAAGCTCAACAACGAGAAGTGGGACCTGATAATCATCGAGAACATTTT
CACCACATCCCACGGCATCCATGAGCGCTTTGACCTCAAGGGCAGCACGT
ACGAACGTACTGTGGGTGCCCGCGCTAGGTCTCAGCCCGGGGTTGTTATG
AAGGACAAAGATTTTCTGGAATTAGGTCGGACAATCCACGTGGGTCCGGA
GCTGGCAGAGAAGCTCAAGGCACAGATTGCGATTGACTCGCAGTTTTTGG
CCCGGAATGGTATCATTGACTACTCATTTCTGGTGGGTGTACATTATGTT
GATAGGGGGATACCGGAGGATATATGGGTGGCGCAGCAGCAGGAGGGGTT
GGAGAAGATGTGGGGGGAGTTTCAGCAGTTGCAGCAGAAGCACGGTTTCT
TCAAAAAGGACTTTGGAATGGCCGAGTTTGTGCATTGGGCGTACCAGCAC
CATCATTTTGATAAGGAGGATTCATTGAGCTTGTTGGACGCACAAGCGGG
GACCGGAGGTTTTTACGGAGGACCGGGAGGGCCGTTGAGTGCCCGGAGTA
CGAGCATGCGCAGGGGGTTCAACGCGTTGTCGCCCACCGCTGCTTCTGCT
TCGTCTCCCTCGTCTTCAGTACCTGTGACATTAAATGCAAGGCAGGGGAT
CAGAGCGTATCGGACATTGCAAGACCAAATAGAAGGAGAGCCGGATCAGA
TCCTATTTTTTGGGATCATTGATTTGCTTGTGCCATTCGACTCGAGGAAG
AGAGGAGAATATTTGGTGAAGAGTTTTTACCACGTGGGAAAGCATGACTT
TTCGGTGATCCCTCCAGAGGACTACCGGAAGAGGTTTGTCCAGTTTATGT
GGAATGCGATTAGATAGGGAGGGGAACGAGCAGGGCGGAAGGGCAGGGAT
GGGGTTTGCGAAGGAGAGAAGAGAGAGGGAGGGAGAGAGGGA

Coding sequence (CDS) from alignment at scaffold_1:964956..966497+

>mRNA_1565 ID=mRNA_1565|Name=jgi.p|Nanoce1779_2|572711|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_1:964956..966497+ (Nannochloropsis oceanica)
ATGGCTTCGTATGGCGCGGAGAAATTCAGGGAAGTGCGACAGGCGTGTGG
GATTGAGGATGATGATTTTTTGTTGTCCGTGGGAATCAGGCAGGTGATTG
GATCCTTGTTGCTGGGGGATCTGTTTGGACTGAGCGAGCAGGTCTCGGAG
GGGAAGAGTGGAAGCTTCTTTTACTGGTCACAGGATGGACGGTACATGGT
GAAGACGATCTCCCGCGCCGAGTCATGTCAAATGCGAAAAATACTGCAAT
CTTACCACGAGCACATGACGGCGCACCCCGAAAACCTCCTCATGCGTATC
CTCGGCCTATATCGCCTCAAGCTCAACAACGAGAAGTGGGACCTGATAAT
CATCGAGAACATTTTCACCACATCCCACGGCATCCATGAGCGCTTTGACC
TCAAGGGCAGCACGTACGAACGTACTGTGGGTGCCCGCGCTAGGTCTCAG
CCCGGGGTTGTTATGAAGGACAAAGATTTTCTGGAATTAGGTCGGACAAT
CCACGTGGGTCCGGAGCTGGCAGAGAAGCTCAAGGCACAGATTGCGATTG
ACTCGCAGTTTTTGGCCCGGAATGGTATCATTGACTACTCATTTCTGGTG
GGTGTACATTATGTTGATAGGGGGATACCGGAGGATATATGGGTGGCGCA
GCAGCAGGAGGGGTTGGAGAAGATGTGGGGGGAGTTTCAGCAGTTGCAGC
AGAAGCACGGTTTCTTCAAAAAGGACTTTGGAATGGCCGAGTTTGTGCAT
TGGGCGTACCAGCACCATCATTTTGATAAGGAGGATTCATTGAGCTTGTT
GGACGCACAAGCGGGGACCGGAGGTTTTTACGGAGGACCGGGAGGGCCGT
TGAGTGCCCGGAGTACGAGCATGCGCAGGGGGTTCAACGCGTTGTCGCCC
ACCGCTGCTTCTGCTTCGTCTCCCTCGTCTTCAGTACCTGTGACATTAAA
TGCAAGGCAGGGGATCAGAGCGTATCGGACATTGCAAGACCAAATAGAAG
GAGAGCCGGATCAGATCCTATTTTTTGGGATCATTGATTTGCTTGTGCCA
TTCGACTCGAGGAAGAGAGGAGAATATTTGGTGAAGAGTTTTTACCACGT
GGGAAAGCATGACTTTTCGGTGATCCCTCCAGAGGACTACCGGAAGAGGT
TTGTCCAGTTTATGTGGAATGCGATTAGATAGATGGCTTCGTATGGCGCG
GAGAAATTCAGGGAAGTGCGACAGGCGTGTGGGATTGAGGATGATGATTT
TTTGTTGTCCGTGGGAATCAGGCAGGTGATTGGATCCTTGTTGCTGGGGG
ATCTGTTTGGACTGAGCGAGCAGGTCTCGGAGGGGAAGAGTGGAAGCTTC
TTTTACTGGTCACAGGATGGACGGTACATGGTGAAGACGATCTCCCGCGC
CGAGTCATGTCAAATGCGAAAAATACTGCAATCTTACCACGAGCACATGA
CGGCGCACCCCGAAAACCTCCTCATGCGTATCCTCGGCCTATATCGCCTC
AAGCTCAACAACGAGAAGTGGGACCTGATAATCATCGAGAACATTTTCAC
CACATCCCACGGCATCCATGAGCGCTTTGACCTCAAGGGCAGCACGTACG
AACGTACTGTGGGTGCCCGCGCTAGGTCTCAGCCCGGGGTTGTTATGAAG
GACAAAGATTTTCTGGAATTAGGTCGGACAATCCACGTGGGTCCGGAGCT
GGCAGAGAAGCTCAAGGCACAGATTGCGATTGACTCGCAGTTTTTGGCCC
GGAATGGTATCATTGACTACTCATTTCTGGTGGGTGTACATTATGTTGAT
AGGGGGATACCGGAGGATATATGGGTGGCGCAGCAGCAGGAGGGGTTGGA
GAAGATGTGGGGGGAGTTTCAGCAGTTGCAGCAGAAGCACGGTTTCTTCA
AAAAGGACTTTGGAATGGCCGAGTTTGTGCATTGGGCGTACCAGCACCAT
CATTTTGATAAGGAGGATTCATTGAGCTTGTTGGACGCACAAGCGGGGAC
CGGAGGTTTTTACGGAGGACCGGGAGGGCCGTTGAGTGCCCGGAGTACGA
GCATGCGCAGGGGGTTCAACGCGTTGTCGCCCACCGCTGCTTCTGCTTCG
TCTCCCTCGTCTTCAGTACCTGTGACATTAAATGCAAGGCAGGGGATCAG
AGCGTATCGGACATTGCAAGACCAAATAGAAGGAGAGCCGGATCAGATCC
TATTTTTTGGGATCATTGATTTGCTTGTGCCATTCGACTCGAGGAAGAGA
GGAGAATATTTGGTGAAGAGTTTTTACCACGTGGGAAAGCATGACTTTTC
GGTGATCCCTCCAGAGGACTACCGGAAGAGGTTTGTCCAGTTTATGTGGA
ATGCGATTAGATAG

Synonyms

Publications