jgi.p|Nanoce1779_2|589693, mRNA_5602 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589693
Unique NamemRNA_5602
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1286
Alignment locationscaffold_11:86869..89438 +

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Properties
Property NameValue
TranscriptId589779
TrackFilteredModels2
ProteinId589693
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:86869..89438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589693gene_5602Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589693mRNA_5602-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5602CDS_5602Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5602 ID=mRNA_5602|Name=jgi.p|Nanoce1779_2|589693|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp
ACAACAGCAACCAAGAAGAAAAGAAGAATGGGTGATTACGATGCGTACGG
TGTCCCTGCCCCTGTAACTGAGGCCCCTCCCCGCCCATCTTCCCCGGGCC
AAAGCGAAGAGGGTTTCAAGCTCTTCGTGGGCAACCTCTCCTTCCGCACT
GAATCGGCCGCCCTCCGTGACGCTTTTGAGCCCTTTGGCCGCATTGTTTT
TTCTACCGTTATCGAGAACCGGGAAACTGGCCAGAGCCGTGGCTTCGGTT
TTGTGGTGTATGAGCAGAAGCACGAGGCAGAGGCGGCCATTTCCCGCATG
GACAACGCCGAGCTGGACGGACGCACCCTGCGAGTGAATTTCGCCCGACC
CCGGTAAGAAACGATATTAAGAGATGCACCGAGGGGAAAGGGGAAGGAGG
GGAAGGAGGGGCGCTCGAAAATTACGCGCAGAGCGAAGGGAGGAGGGAGG
AGGGAGGGAACGAATCGATGTGCTCTCGGAGAGGGTCGTGATGACCTAAT
GTAAATGTACTATAGAGAAACTTATGAAACTTGTGTTATAGTGACCCTAA
TTAGACTGAGCATAACTTAGTCAAATCGAGTATGAGATACCTTCCGTCCC
CTGACTCTCCTTCCTCCTCCTGCCCCCTCCCCTCCTCACTTTCCATTTTC
TCCTCCTTTCCCTTCCCGTCCATCACTTTCCCACAGGGAGGAGTTCGGCG
GTCGTCGTGGAGGCCGCGGTGGCTTTGGTGGCGGTTTTGGCGGGGGCCGA
GGCGGCGGGGGATTTGGTGGAGGCATGGGCGGCGGTGGCTATGGCGCGCC
TCGCTACCCCGGTGCGGGCGGATATGCAGCTGGCGGCCAGTACGGAGCAG
GCGCCGGCTTGGGCGGCGCGGGGGGCTACGGCGGCTACGCAGGCGCAGGA
GCTGGTGGGGTGAGTAATATGGGTTATGGTTGTTGTAATATGGGTGATGA
TTATTGTAAGATGGATTGTTCTGGGGTGGGAGTTGATGGCCCGGGGGCGT
CACGGCATGGATGAGGGTGGGAGTGGGGGAGGACATGGATGTGCGTGTGG
GGGAGGGGTTTGCGATGTCGTACTAGTGTTCGTGTCTGCCCCTGTGTTTG
TATCTGTGTCTACCTATTTTTCTGTGTAGGTGTATGTGTATCTCAGAATC
TGAGTCTGACTTTATGTGTACGTGTGGGTGGGTGTGAGTGTCTAGATGGG
TGTGGAGGGATTTCTTCCCTTTTCTCGGTTTCCCCGTAACCTTCACCTTC
AAGTACCTCCCCGCATTCCCTCCCCCTCTCACCTCC
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protein sequence of jgi.p|Nanoce1779_2|589693

>mRNA_5602-protein ID=mRNA_5602-protein|Name=jgi.p|Nanoce1779_2|589693|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MGDYDAYGVPAPVTEAPPRPSSPGQSEEGFKLFVGNLSFRTESAALRDAF
EPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRT
LRVNFARPR*
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mRNA from alignment at scaffold_11:86869..89438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5602 ID=mRNA_5602|Name=jgi.p|Nanoce1779_2|589693|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp|location=Sequence derived from alignment at scaffold_11:86869..89438+ (Nannochloropsis oceanica)
ACAACAGCAACCAAGAAGAAAAGAAGAATGGGTGATTACGATGCGTACGG
TGTCCCTGCCCCTGTAACTGAGGCCCCTCCCCGCCCATCTTCCCCGGGCC
AAAGCGAAGAGGTACGTGTATTTGTGAGGGTGGGAGTGGGTGGACGGGTT
CTAAGCTTTTGTTCCTCCGTAGTCCGTCCGACTCCCATCTCAGTTGTTCA
TTGAATCAGATGTTCGTCCCACTTGGGCCGGCGGCAGCGGCACGTGTGTC
CATGCTTGTTTGTCTGCCTGTCAAGTTTAATTCATTGAAGCAATAAAAGA
AGACGCACTTGTTTGTTAGTGAAGTAGACGGGAGACAAGGAGTACAATAT
CACCCCCATTCTCAAGCAGCAGATGGTTTACCATTCCCGCTCCCACGTCT
GCCCGACGCTGTATGTCTCCGTCTTTTTACTGCCTTACTATCCCCCTAAT
TGCCTGTATCTTAAATGCCTAGCGACCATACTTTTGACTGTTTACCCTCA
TCTTCTTTCCTGTTCCCCCTTCCGCTTTTTTACCCTTCTACATCACCCCC
TCCCCTTCCATCTTCCTTCCCTCAAGCAGAGGTTGCCCTCGATGTTTGAC
TAGGTCCCCCCCTCCTCCTGTCTTCCGTACCATCCACTTACTCACAGTGC
ATCTCCCTGTAGAAATAAAAGGGGAGCATTGACGAGCCTGCATTCCTCCT
ACCCATAAACCCCGCCCTCCCTCCCTCCCTCTCCCCCCCCCCCCCCTCCC
AACCCACAACAGGGTTTCAAGCTCTTCGTGGGCAACCTCTCCTTCCGCAC
TGAATCGGCCGCCCTCCGTGACGCTTTTGAGCCCTTTGGCCGCATTGTTT
TTTCTACCGTTATCGAGAACCGGGAAACTGGCCAGAGCCGGTACGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGTGGATACTGCTTTCCTTGGTGTG
TGCAGTGCCTTGTGCCATTATGGGGATGGGGAGAGATAAAATGGAGTATG
GTTCTTTTTGATCCGTGCTGGTTTTAATTCATATGCATACTTTTTTTTTT
GGGATTCCTTGCGACAGTGGCTTCGGTTTTGTGGTGTATGAGCAGAAGCA
CGAGGCAGAGGCGGCCATTTCCCGCATGGACAACGCCGAGCTGGACGGAC
GCACCCTGCGAGTGAATTTCGCCCGACCCCGGTAAGAAACGATATTAAGA
GATGCACCGAGGGGAAAGGGGAAGGAGGGGAAGGAGGGGCGCTCGAAAAT
TACGCGCAGAGCGAAGGGAGGAGGGAGGAGGGAGGGAACGAATCGATGTG
CTCTCGGAGAGGGTCGTGATGACCTAATGTAAATGTACTATAGAGAAACT
TATGAAACTTGTGTTATAGTGACCCTAATTAGACTGAGCATAACTTAGTC
AAATCGAGTATGAGATACCTTCCGTCCCCTGACTCTCCTTCCTCCTCCTG
CCCCCTCCCCTCCTCACTTTCCATTTTCTCCTCCTTTCCCTTCCCGTCCA
TCACTTTCCCACAGGGAGGAGTTCGGCGGTCGTCGTGGAGGCCGCGGTGG
CTTTGGTGGCGGTTTTGGCGGGGGCCGAGGCGGCGGGGGATTTGGTGGAG
GCATGGGCGGCGGTGGTACGTATTTTTCTCTCCTTTTTCTCTTCTTTCTC
TGTTCTTCTGTCAATTTGATTTCTTTTCGATTTTGGGGGAGTTGGGAGGG
GAGGGAGGGCTTTCCATTTCCCCCCGTCTTTTTTTCTTTTCTTTTCCCAT
TTTCCTCTTCTCCTTTTTGAAAGCAAGCTCATTCTTTCCTCCCTCCCTCC
CTCTCTCCCTCGGTCGCTCTTTTCGCACAGGCTATGGCGCGCCTCGCTAC
CCCGGTGCGGGCGGATATGCAGCTGGCGGCCAGGTGGGTCGAGGAGGAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAAGGTGGGGGTGTGAAGATTGCTACTCGTTGCTACT
TTTTCTATTCTCTTGACTAATACCTTCTCTCTCCCTCTTCTCTTCTCGAC
TTTCTTCTCCGCCTCTCTCCTCCTACTCCCCCTATTCCCTCGTCGTCGTC
GTCTTCCTTTCTCTTGAACACCAGTACGGAGCAGGCGCCGGCTTGGGCGG
CGCGGGGGGCTACGGCGGCTACGCAGGCGCAGGAGCTGGTGGGGTGAGTA
ATATGGGTTATGGTTGTTGTAATATGGGTGATGATTATTGTAAGATGGAT
TGTTCTGGGGTGGGAGTTGATGGCCCGGGGGCGTCACGGCATGGATGAGG
GTGGGAGTGGGGGAGGACATGGATGTGCGTGTGGGGGAGGGGTTTGCGAT
GTCGTACTAGTGTTCGTGTCTGCCCCTGTGTTTGTATCTGTGTCTACCTA
TTTTTCTGTGTAGGTGTATGTGTATCTCAGAATCTGAGTCTGACTTTATG
TGTACGTGTGGGTGGGTGTGAGTGTCTAGATGGGTGTGGAGGGATTTCTT
CCCTTTTCTCGGTTTCCCCGTAACCTTCACCTTCAAGTACCTCCCCGCAT
TCCCTCCCCCTCTCACCTCC
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Coding sequence (CDS) from alignment at scaffold_11:86869..89438+

>mRNA_5602 ID=mRNA_5602|Name=jgi.p|Nanoce1779_2|589693|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_11:86869..89438+ (Nannochloropsis oceanica)
ATGGGTGATTACGATGCGTACGGTGTCCCTGCCCCTGTAACTGAGGCCCC
TCCCCGCCCATCTTCCCCGGGCCAAAGCGAAGAGGGTTTCAAGCTCTTCG
TGGGCAACCTCTCCTTCCGCACTGAATCGGCCGCCCTCCGTGACGCTTTT
GAGCCCTTTGGCCGCATTGTTTTTTCTACCGTTATCGAGAACCGGGAAAC
TGGCCAGAGCCGTGGCTTCGGTTTTGTGGTGTATGAGCAGAAGCACGAGG
CAGAGGCGGCCATTTCCCGCATGGACAACGCCGAGCTGGACGGACGCACC
CTGCGAGTGAATTTCGCCCGACCCCGGTAAATGGGTGATTACGATGCGTA
CGGTGTCCCTGCCCCTGTAACTGAGGCCCCTCCCCGCCCATCTTCCCCGG
GCCAAAGCGAAGAGGGTTTCAAGCTCTTCGTGGGCAACCTCTCCTTCCGC
ACTGAATCGGCCGCCCTCCGTGACGCTTTTGAGCCCTTTGGCCGCATTGT
TTTTTCTACCGTTATCGAGAACCGGGAAACTGGCCAGAGCCGTGGCTTCG
GTTTTGTGGTGTATGAGCAGAAGCACGAGGCAGAGGCGGCCATTTCCCGC
ATGGACAACGCCGAGCTGGACGGACGCACCCTGCGAGTGAATTTCGCCCG
ACCCCGGTAAATGGGTGATTACGATGCGTACGGTGTCCCTGCCCCTGTAA
CTGAGGCCCCTCCCCGCCCATCTTCCCCGGGCCAAAGCGAAGAGGGTTTC
AAGCTCTTCGTGGGCAACCTCTCCTTCCGCACTGAATCGGCCGCCCTCCG
TGACGCTTTTGAGCCCTTTGGCCGCATTGTTTTTTCTACCGTTATCGAGA
ACCGGGAAACTGGCCAGAGCCGTGGCTTCGGTTTTGTGGTGTATGAGCAG
AAGCACGAGGCAGAGGCGGCCATTTCCCGCATGGACAACGCCGAGCTGGA
CGGACGCACCCTGCGAGTGAATTTCGCCCGACCCCGGTAA
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Synonyms
Publications