jgi.p|Nanoce1779_2|590405, mRNA_5817 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590405
Unique Name	mRNA_5817
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1366
Alignment location	scaffold_11:637321..638686 -

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Properties


Property Name	Value
TranscriptId	590491
Track	FilteredModels2
ProteinId	590405

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:637321..638686 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590405	gene_5817	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590405	mRNA_5817-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5817	CDS_5817	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:637321..638686-
coding sequence from alignment at scaffold_11:637321..638686-

mRNA sequence

>mRNA_5817 ID=mRNA_5817|Name=jgi.p|Nanoce1779_2|590405|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
TCACTCCGTAACGGGCACACAACCCCTTCATCGTCTCTCCCCTCACCACC
ACATGCTGCCTCCTCCTCTGCTGCTGCTCCTGCTGCTGCCTTTGCGGATG
CTGCTCTTGCTGCCGATGCTGATGCTTCCATCCCTCCCTCCAACAGTACC
CGAACCCCTCATCCTCGTCGTCCTCCTCCGAACTCGACATCTTCATCACC
ACCCCTCCTCCAGCCCTTCCTCCCTCCCTACCTCGTCCCCCCAATCCACC
GCCTCGTGCCACCCAGGCCGCCGTCGCCTTCCCATCATATTCTACATTTC
TGACCCTGAGCTTCTGTCCTGATATCAACACACCTGCTGGCTCGCCTACC
TTGAATTTATCTCTGTTGTCCCTTCGCAAGACATCGATTTTGAGACCGAA
GGACCGAGCTAGCGAGGGCAACGTATCCCCTGCCTGGATGAGGTAGATGA
AGATAGGGAAGCACCACAACGGCTCGTAGAATGCGTGATCTGGATTTGTT
TTGTCTCCCCATGATTCATAGGGCTGTAACGGCATGTATCGTGACTGATT
AAGGCGCTTGCTGCTGGAGCTGGTGCTGGCGCTGGCGCCGGTGCTTACCA
GGGAGGAAGAGAGGGAGGGCGAGGAGGGGGAGAAGGAGATACAGCCTCCC
CCAGTCATGAGCATGGACAAAATTGAAGTGTAGTGGTCATTTTCGTCTGG
CGAAGAAGAATAGTAGGAAGAAGACTCACCGGAGGAGATGGAGGAAGAGG
ACGAAGAGGTGGAGGGATCATCCATGTTTACGTACTCGGCATGAGGATTC
TCCTTGCGCAGTAGCCGTACGGCCACTATCTCCTCCTCGTCCCCGCTTTG
AATAAGCAAGTGCTGAACCTGCTTGATCGAAAATACGGGCTGTCCATTCA
CGTGCGTTAGGCGGTCTTGTTCCTGTATGTGGGCCAGGCCTGAGTGTAAC
GCTGCAGAGCGATGCTGCGGATGGTGGTGACACTCGTTCGGGTATGCCTC
CCCATCGAAGGCCTCGAAAGCATGAACGTGCCGTACTTCCAGGATGTCGG
GGTAGACAGGCGAAGGCGCTATCTGCAATTGTTTGGTCTCAATGTCCTGA
CGAGGAGACAGGGCTTTGAGTAAAGACGCCCGGGACAAACTCACCAAGTA
GACAAGTGGAAATTTGATGCACTTTATCAAAATAGGCTCATCGAGCAAGG
GCGTCGAGAGCTGAAGCTTGTGCAGCTGAAATAGCGGGTCGTCGTGGTCA
TGGTCCATGAAAGCCTGCAGGTTTGCTTGTTGATTGCAGTCCAAAATGAT
GCCCGACCCGCCACGCCAATGCTGCTGCTACTACTACTGCACCCGTGCTC
GACTGAAGGTACCCTG

protein sequence of jgi.p|Nanoce1779_2|590405

>mRNA_5817-protein ID=mRNA_5817-protein|Name=jgi.p|Nanoce1779_2|590405|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MLPPPLLLLLLLPLRMLLLLPMLMLPSLPPTVPEPLILVVLLRTRHLHHH
PSSSPSSLPTSSPQSTASCHPGRRRLPIIFYISDPELLS*

mRNA from alignment at scaffold_11:637321..638686-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5817 ID=mRNA_5817|Name=jgi.p|Nanoce1779_2|590405|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at scaffold_11:637321..638686- (Nannochloropsis oceanica)
TCACTCCGTAACGGGCACACAACCCCTTCATCGTCTCTCCCCTCACCACC
ACATGCTGCCTCCTCCTCTGCTGCTGCTCCTGCTGCTGCCTTTGCGGATG
CTGCTCTTGCTGCCGATGCTGATGCTTCCATCCCTCCCTCCAACAGTACC
CGAACCCCTCATCCTCGTCGTCCTCCTCCGAACTCGACATCTTCATCACC
ACCCCTCCTCCAGCCCTTCCTCCCTCCCTACCTCGTCCCCCCAATCCACC
GCCTCGTGCCACCCAGGCCGCCGTCGCCTTCCCATCATATTCTACATTTC
TGACCCTGAGCTTCTGTCCTGATATCAACACACCTGCTGGCTCGCCTACC
TTGAATTTATCTCTGTTGTCCCTTCGCAAGACATCGATTTTGAGACCGAA
GGACCGAGCTAGCGAGGGCAACGTATCCCCTGCCTGGATGAGGTAGATGA
AGATAGGGAAGCACCACAACGGCTCGTAGAATGCGTGATCTGGATTTGTT
TTGTCTCCCCATGATTCATAGGGCTGTAACGGCATGTATCGTGACTGATT
AAGGCGCTTGCTGCTGGAGCTGGTGCTGGCGCTGGCGCCGGTGCTTACCA
GGGAGGAAGAGAGGGAGGGCGAGGAGGGGGAGAAGGAGATACAGCCTCCC
CCAGTCATGAGCATGGACAAAATTGAAGTGTAGTGGTCATTTTCGTCTGG
CGAAGAAGAATAGTAGGAAGAAGACTCACCGGAGGAGATGGAGGAAGAGG
ACGAAGAGGTGGAGGGATCATCCATGTTTACGTACTCGGCATGAGGATTC
TCCTTGCGCAGTAGCCGTACGGCCACTATCTCCTCCTCGTCCCCGCTTTG
AATAAGCAAGTGCTGAACCTGCTTGATCGAAAATACGGGCTGTCCATTCA
CGTGCGTTAGGCGGTCTTGTTCCTGTATGTGGGCCAGGCCTGAGTGTAAC
GCTGCAGAGCGATGCTGCGGATGGTGGTGACACTCGTTCGGGTATGCCTC
CCCATCGAAGGCCTCGAAAGCATGAACGTGCCGTACTTCCAGGATGTCGG
GGTAGACAGGCGAAGGCGCTATCTGCAATTGTTTGGTCTCAATGTCCTGA
CGAGGAGACAGGGCTTTGAGTAAAGACGCCCGGGACAAACTCACCAAGTA
GACAAGTGGAAATTTGATGCACTTTATCAAAATAGGCTCATCGAGCAAGG
GCGTCGAGAGCTGAAGCTTGTGCAGCTGAAATAGCGGGTCGTCGTGGTCA
TGGTCCATGAAAGCCTGCAGGTTTGCTTGTTGATTGCAGTCCAAAATGAT
GCCCGACCCGCCACGCCAATGCTGCTGCTACTACTACTGCACCCGTGCTC
GACTGAAGGTACCCTG

Coding sequence (CDS) from alignment at scaffold_11:637321..638686-

>mRNA_5817 ID=mRNA_5817|Name=jgi.p|Nanoce1779_2|590405|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_11:637321..638686- (Nannochloropsis oceanica)
ATGCTGCCTCCTCCTCTGCTGCTGCTCCTGCTGCTGCCTTTGCGGATGCT
GCTCTTGCTGCCGATGCTGATGCTTCCATCCCTCCCTCCAACAGTACCCG
AACCCCTCATCCTCGTCGTCCTCCTCCGAACTCGACATCTTCATCACCAC
CCCTCCTCCAGCCCTTCCTCCCTCCCTACCTCGTCCCCCCAATCCACCGC
CTCGTGCCACCCAGGCCGCCGTCGCCTTCCCATCATATTCTACATTTCTG
ACCCTGAGCTTCTGTCCTGA

Synonyms

Publications