jgi.p|Nanoce1779_2|639283, mRNA_5609 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639283
Unique NamemRNA_5609
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1569
Alignment locationscaffold_11:104937..106505 -

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Properties
Property NameValue
TranscriptId639369
TrackFilteredModels2
ProteinId639283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:104937..106505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639283gene_5609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5609CDS_5609Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639283mRNA_5609-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5609 ID=mRNA_5609|Name=jgi.p|Nanoce1779_2|639283|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATGATACCCGGCAGCAGCAGCCGTAGTCGGAATGAATCTGTATACTCCAC
AGTCTCATCGATGGCAGAGCTCGAGGAGAAGAAGGAGGCGGACTCAAGAT
TACTGCAATCGCAGCCAATTTCCTTCATCGACTTGGCGTTCGCACGTAGC
GATCCACGTGATCTAAGTGTTACTTATATGGCCAGTTTTATGAAGGCATG
GCAAGAAGTAGGGAGTGGTGGTGTAGACCGCACGCGAGTCATCCAGTCCA
TGCGGGCGAGGCAGCGGTGGAGCGTCGTGGCGGGGTGCGACGTGAGCTGG
GGCATAGGCGCTCAACTTAGAAAGATAATGAAGATCACGCCCCTGGACCT
CAAAGATGTTGTCTTGCTTTCGTGGGGTCCAACATGGGCTCATCAGAAGG
CCAAGGCAACAGATGAACTAGTTTCCTCGACCGCCCTGGCTGAAGAGGTG
CGGACTTCGGAGGAGTACCGCGCCTTAGTGCAGGCGTATGGCCAAGGCAC
GGCTATGTATGTGGAAGTTGTCGACGGGGATATGGCGGCTCAAGTCACCA
ACACTGCTTTCGATCACTTGCTAGATGGAAGGGGAAAGATGGAAAGCCGC
GTCTTGATACATCGGATGATGCCCATGTTGCTGCTGGGCCAGCTGGTGGC
ACCTGAGGATAGGGAATCTTTCTACGACGGTGTTATGTGCTTTTTCGTGC
CGAGCCGAGAACCGAAGAGCACGTTTTTCCTGAAGCTGTTCGCTGGGAGC
GGGGACATCAGGCTCTGCATCGTTTCCTTCCGCACCGTGCAAATAGGACA
TTGGCGCGGTAGCCTATTGTTGGTGGAGTTGGCTCCCGACAGCCGGTCCC
TCACCACCCAGCCAAAGCGCAACCAGATCGTCGACAGCTTCCGCGCCCCA
CGTTCCTGCTCTCTTTCGTCTCTCTCGCCCTCCTTCGGACGAAGGGCGCC
ATTACCCTACTTTTCATCCCAATCCCTTGCACCGCTGTCGGTGGAAGAAG
AGCAACAACATATGGGCAAGATGTGGGGAGAACATGCAGAGGAAAGGCGA
CAAGAAGCGTGGCAGAGGGCCACCACCATGCAAGGGGATGGAGCGGAAGT
GAATGCGAGCACAGCAGAGGAGGGAGGAGGAGTGGGAGAAAGAGGACGAA
GAAGAGAAGAGGGAGGGAGAGAGGAGGAAAGGAGAACAGCAGGTGTCTAT
GCATTTCCCGGCCTGGCTTGTATAACACTGTCAGCGAATGAGAACCAGAT
GCGGGGTCTTCTGAAAGGTGCTGTGGAGAGACAAAGCCTCTTCGTCACAG
GGCGCGCGCCCACGAGCCTCCACCAACAGGCGTTCGGACCGGGTAATAGT
GCTGATGGAAAGGGTGCAAGGGGAAAGTTGGGCAGAACGGTCGACTTGCA
AAGGAGAAAGCAGGAAGAAAGGGATAGCAAGGATCTTGCTGCCAGCAACA
GCGGCGAGACGACGGGCGTGGTCGGGGAGGAGGACGACGAACTGGACGCC
GTGCTGGCCAATGCGGTAGGTCCGGGGTTGGATGACGTGGTTATGAGCCA
GGTATTAAATGACTGTTGA
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protein sequence of jgi.p|Nanoce1779_2|639283

>mRNA_5609-protein ID=mRNA_5609-protein|Name=jgi.p|Nanoce1779_2|639283|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MIPGSSSRSRNESVYSTVSSMAELEEKKEADSRLLQSQPISFIDLAFARS
DPRDLSVTYMASFMKAWQEVGSGGVDRTRVIQSMRARQRWSVVAGCDVSW
GIGAQLRKIMKITPLDLKDVVLLSWGPTWAHQKAKATDELVSSTALAEEV
RTSEEYRALVQAYGQGTAMYVEVVDGDMAAQVTNTAFDHLLDGRGKMESR
VLIHRMMPMLLLGQLVAPEDRESFYDGVMCFFVPSREPKSTFFLKLFAGS
GDIRLCIVSFRTVQIGHWRGSLLLVELAPDSRSLTTQPKRNQIVDSFRAP
RSCSLSSLSPSFGRRAPLPYFSSQSLAPLSVEEEQQHMGKMWGEHAEERR
QEAWQRATTMQGDGAEVNASTAEEGGGVGERGRRREEGGREEERRTAGVY
AFPGLACITLSANENQMRGLLKGAVERQSLFVTGRAPTSLHQQAFGPGNS
ADGKGARGKLGRTVDLQRRKQEERDSKDLAASNSGETTGVVGEEDDELDA
VLANAVGPGLDDVVMSQVLNDC*
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mRNA from alignment at scaffold_11:104937..106505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5609 ID=mRNA_5609|Name=jgi.p|Nanoce1779_2|639283|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at scaffold_11:104937..106505- (Nannochloropsis oceanica)
ATGATACCCGGCAGCAGCAGCCGTAGTCGGAATGAATCTGTATACTCCAC
AGTCTCATCGATGGCAGAGCTCGAGGAGAAGAAGGAGGCGGACTCAAGAT
TACTGCAATCGCAGCCAATTTCCTTCATCGACTTGGCGTTCGCACGTAGC
GATCCACGTGATCTAAGTGTTACTTATATGGCCAGTTTTATGAAGGCATG
GCAAGAAGTAGGGAGTGGTGGTGTAGACCGCACGCGAGTCATCCAGTCCA
TGCGGGCGAGGCAGCGGTGGAGCGTCGTGGCGGGGTGCGACGTGAGCTGG
GGCATAGGCGCTCAACTTAGAAAGATAATGAAGATCACGCCCCTGGACCT
CAAAGATGTTGTCTTGCTTTCGTGGGGTCCAACATGGGCTCATCAGAAGG
CCAAGGCAACAGATGAACTAGTTTCCTCGACCGCCCTGGCTGAAGAGGTG
CGGACTTCGGAGGAGTACCGCGCCTTAGTGCAGGCGTATGGCCAAGGCAC
GGCTATGTATGTGGAAGTTGTCGACGGGGATATGGCGGCTCAAGTCACCA
ACACTGCTTTCGATCACTTGCTAGATGGAAGGGGAAAGATGGAAAGCCGC
GTCTTGATACATCGGATGATGCCCATGTTGCTGCTGGGCCAGCTGGTGGC
ACCTGAGGATAGGGAATCTTTCTACGACGGTGTTATGTGCTTTTTCGTGC
CGAGCCGAGAACCGAAGAGCACGTTTTTCCTGAAGCTGTTCGCTGGGAGC
GGGGACATCAGGCTCTGCATCGTTTCCTTCCGCACCGTGCAAATAGGACA
TTGGCGCGGTAGCCTATTGTTGGTGGAGTTGGCTCCCGACAGCCGGTCCC
TCACCACCCAGCCAAAGCGCAACCAGATCGTCGACAGCTTCCGCGCCCCA
CGTTCCTGCTCTCTTTCGTCTCTCTCGCCCTCCTTCGGACGAAGGGCGCC
ATTACCCTACTTTTCATCCCAATCCCTTGCACCGCTGTCGGTGGAAGAAG
AGCAACAACATATGGGCAAGATGTGGGGAGAACATGCAGAGGAAAGGCGA
CAAGAAGCGTGGCAGAGGGCCACCACCATGCAAGGGGATGGAGCGGAAGT
GAATGCGAGCACAGCAGAGGAGGGAGGAGGAGTGGGAGAAAGAGGACGAA
GAAGAGAAGAGGGAGGGAGAGAGGAGGAAAGGAGAACAGCAGGTGTCTAT
GCATTTCCCGGCCTGGCTTGTATAACACTGTCAGCGAATGAGAACCAGAT
GCGGGGTCTTCTGAAAGGTGCTGTGGAGAGACAAAGCCTCTTCGTCACAG
GGCGCGCGCCCACGAGCCTCCACCAACAGGCGTTCGGACCGGGTAATAGT
GCTGATGGAAAGGGTGCAAGGGGAAAGTTGGGCAGAACGGTCGACTTGCA
AAGGAGAAAGCAGGAAGAAAGGGATAGCAAGGATCTTGCTGCCAGCAACA
GCGGCGAGACGACGGGCGTGGTCGGGGAGGAGGACGACGAACTGGACGCC
GTGCTGGCCAATGCGGTAGGTCCGGGGTTGGATGACGTGGTTATGAGCCA
GGTATTAAATGACTGTTGA
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Coding sequence (CDS) from alignment at scaffold_11:104937..106505-

>mRNA_5609 ID=mRNA_5609|Name=jgi.p|Nanoce1779_2|639283|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at scaffold_11:104937..106505- (Nannochloropsis oceanica)
ATGATACCCGGCAGCAGCAGCCGTAGTCGGAATGAATCTGTATACTCCAC
AGTCTCATCGATGGCAGAGCTCGAGGAGAAGAAGGAGGCGGACTCAAGAT
TACTGCAATCGCAGCCAATTTCCTTCATCGACTTGGCGTTCGCACGTAGC
GATCCACGTGATCTAAGTGTTACTTATATGGCCAGTTTTATGAAGGCATG
GCAAGAAGTAGGGAGTGGTGGTGTAGACCGCACGCGAGTCATCCAGTCCA
TGCGGGCGAGGCAGCGGTGGAGCGTCGTGGCGGGGTGCGACGTGAGCTGG
GGCATAGGCGCTCAACTTAGAAAGATAATGAAGATCACGCCCCTGGACCT
CAAAGATGTTGTCTTGCTTTCGTGGGGTCCAACATGGGCTCATCAGAAGG
CCAAGGCAACAGATGAACTAGTTTCCTCGACCGCCCTGGCTGAAGAGGTG
CGGACTTCGGAGGAGTACCGCGCCTTAGTGCAGGCGTATGGCCAAGGCAC
GGCTATGTATGTGGAAGTTGTCGACGGGGATATGGCGGCTCAAGTCACCA
ACACTGCTTTCGATCACTTGCTAGATGGAAGGGGAAAGATGGAAAGCCGC
GTCTTGATACATCGGATGATGCCCATGTTGCTGCTGGGCCAGCTGGTGGC
ACCTGAGGATAGGGAATCTTTCTACGACGGTGTTATGTGCTTTTTCGTGC
CGAGCCGAGAACCGAAGAGCACGTTTTTCCTGAAGCTGTTCGCTGGGAGC
GGGGACATCAGGCTCTGCATCGTTTCCTTCCGCACCGTGCAAATAGGACA
TTGGCGCGGTAGCCTATTGTTGGTGGAGTTGGCTCCCGACAGCCGGTCCC
TCACCACCCAGCCAAAGCGCAACCAGATCGTCGACAGCTTCCGCGCCCCA
CGTTCCTGCTCTCTTTCGTCTCTCTCGCCCTCCTTCGGACGAAGGGCGCC
ATTACCCTACTTTTCATCCCAATCCCTTGCACCGCTGTCGGTGGAAGAAG
AGCAACAACATATGGGCAAGATGTGGGGAGAACATGCAGAGGAAAGGCGA
CAAGAAGCGTGGCAGAGGGCCACCACCATGCAAGGGGATGGAGCGGAAGT
GAATGCGAGCACAGCAGAGGAGGGAGGAGGAGTGGGAGAAAGAGGACGAA
GAAGAGAAGAGGGAGGGAGAGAGGAGGAAAGGAGAACAGCAGGTGTCTAT
GCATTTCCCGGCCTGGCTTGTATAACACTGTCAGCGAATGAGAACCAGAT
GCGGGGTCTTCTGAAAGGTGCTGTGGAGAGACAAAGCCTCTTCGTCACAG
GGCGCGCGCCCACGAGCCTCCACCAACAGGCGTTCGGACCGGGTAATAGT
GCTGATGGAAAGGGTGCAAGGGGAAAGTTGGGCAGAACGGTCGACTTGCA
AAGGAGAAAGCAGGAAGAAAGGGATAGCAAGGATCTTGCTGCCAGCAACA
GCGGCGAGACGACGGGCGTGGTCGGGGAGGAGGACGACGAACTGGACGCC
GTGCTGGCCAATGCGGTAGGTCCGGGGTTGGATGACGTGGTTATGAGCCA
GGTATTAAATGACTGTTGA
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Synonyms
Publications