jgi.p|Nanoce1779_2|591605, mRNA_5169 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591605
Unique NamemRNA_5169
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1686
Alignment locationscaffold_12:635922..637607 +

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Properties
Property NameValue
TranscriptId591691
TrackFilteredModels2
ProteinId591605
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:635922..637607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591605gene_5169Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591605mRNA_5169-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5169CDS_5169Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5169 ID=mRNA_5169|Name=jgi.p|Nanoce1779_2|591605|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
CCCCTCTCCTCTTCACTTTGAACAGATCCAGCAGCAGCGTCACCTTCTGT
CTTCCGTTCTTCCCCTCCCTCTTCCTCCTCCTCCCAGTCAACCTCCTCCC
TCCTGAGAACACGGCACGCCAAGCCCAACTCAGTCGGTCCAACAATCACC
CCTCCCTCATCGCCACTATTTAGCCTCGCCTCCATCTCTTCCAACACTTC
CGCCACCTTTTTCGCGTCCTTCAAAGCCGTTGCTGCCGTCAGCGCTGCTG
CGTAATCCTCCCTCTGCCGTCCCCCTCCAGGAGGAGGGAGGAGAGCGTCA
TAAGCCTCCAAGGCTCGGGCATGGAAGCCCGCACACACATATTCAGCGAC
ACGTATGTCTCCTCCCCTCCCATTATCACCACCTACTTCTCCTCCTGGTG
TTCCTCGGCCAAGGGCCTCAAGAAGATCCTCGTTTGCTTTCACTTCACCG
CGCAGGGCTTGGGCGACGAGTAGCCGTTGGAGTGAGGGACGAGGGATGGC
CACATTTCTTGCTTCCATCTCTCGCATAATCTGACGCGCGTTTTGGGAAT
CCCCAGCGTTGGCACAGGCTTGCATGGCGCACAGGAGACTGCCTTCGGTG
AGGGGGACGTTGCGTTTGGCAGCATCCTTGACGAGAAACATGGCTTCCAC
ATTTTTGTTCCATCGGGCGCAGCCGGTAAGGAGGATCGAGTAAGTCTTGG
GGGAGGGACGAAGCAGGGCGCGGGAGGGCTGTTGGATGTCGGTACTGCAG
CTATTGCTTCTGCTGCTGCTGTGGGCTCTCCTCGCGGCAGCTGTAGAAAT
AGTAGTGGGTTGGGAGGATGCTGGGAGAGGCTCGATGACGTCTTCGAAGA
GCAACCAAGCCTGCTCGAATCTCCCCGCCTTGCTATGTGAATCCAACAAT
TGATTTATTAGATCTACCGGTCGAATTCCTTTTGGTAAGGCTCTCTCTTG
TCCTGCAGCTTCTCCTGCTGCTCCTCTTCCCTTTCCTTTTCCCTCTCCAT
CGTTTCTTTCGATGGATGCGGAGCCATTCCCCGACCGCCTCAACCCATCC
AACACGGCCTGTCCCACGGCGTCTAATTGATGGGCTTCCATACACGCTTG
AATCACATATCTGTAATCACGGGCTTGGCCCTGGTTGCGGTGGAGGAGGT
CGAAGGCGCGCGTGAACTCGTGCCGGTTACAAGCGTCTCGGACGTATTTC
CAGGCACGCATAGGGGCAACACCCCTTCTATTCAGAGTGTGAGGGCTGCT
GTTGGCACTGCTCGTGCTTTCGATACTCGCAACTTCGGCGGTGGAAACTA
GTTCTGGGGAGGACGCGGCAGTTGCAGTGGAGGTAGCATTGGTCGAGGCA
GGGGCAAGAGATGAAGACGATGACAAGGCCTGCCGCGGTGTGGTGGTCAC
CGCTTTCAAATGCTTCGCCTGCCGCCGCAAGGTGCGGTCTAGAGATCGAA
GCATGCTTTGAGAAAGTTATCCGTGTCGATGGAGGAGATGGAGGGGTGGG
GAGGTGAGAGGACGAGGCTGGCGTCTCACTATAGGCTGATGATGGCGGAT
TGCTGTGATGATACTCCCCCTAAGGCCACGCAGATATGGCCATCATAACC
CTGTGGTTCTGGTCGTGGTGAAGGGGTTGGTGTTGTGTGCGGGATGCGTG
CTTATGACACGCGGTCAAGACGCAAAGGCTTACCCC
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protein sequence of jgi.p|Nanoce1779_2|591605

>mRNA_5169-protein ID=mRNA_5169-protein|Name=jgi.p|Nanoce1779_2|591605|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MGFHTRLNHISVITGLALVAVEEVEGARELVPVTSVSDVFPGTHRGNTPS
IQSVRAAVGTARAFDTRNFGGGN*
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mRNA from alignment at scaffold_12:635922..637607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5169 ID=mRNA_5169|Name=jgi.p|Nanoce1779_2|591605|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp|location=Sequence derived from alignment at scaffold_12:635922..637607+ (Nannochloropsis oceanica)
CCCCTCTCCTCTTCACTTTGAACAGATCCAGCAGCAGCGTCACCTTCTGT
CTTCCGTTCTTCCCCTCCCTCTTCCTCCTCCTCCCAGTCAACCTCCTCCC
TCCTGAGAACACGGCACGCCAAGCCCAACTCAGTCGGTCCAACAATCACC
CCTCCCTCATCGCCACTATTTAGCCTCGCCTCCATCTCTTCCAACACTTC
CGCCACCTTTTTCGCGTCCTTCAAAGCCGTTGCTGCCGTCAGCGCTGCTG
CGTAATCCTCCCTCTGCCGTCCCCCTCCAGGAGGAGGGAGGAGAGCGTCA
TAAGCCTCCAAGGCTCGGGCATGGAAGCCCGCACACACATATTCAGCGAC
ACGTATGTCTCCTCCCCTCCCATTATCACCACCTACTTCTCCTCCTGGTG
TTCCTCGGCCAAGGGCCTCAAGAAGATCCTCGTTTGCTTTCACTTCACCG
CGCAGGGCTTGGGCGACGAGTAGCCGTTGGAGTGAGGGACGAGGGATGGC
CACATTTCTTGCTTCCATCTCTCGCATAATCTGACGCGCGTTTTGGGAAT
CCCCAGCGTTGGCACAGGCTTGCATGGCGCACAGGAGACTGCCTTCGGTG
AGGGGGACGTTGCGTTTGGCAGCATCCTTGACGAGAAACATGGCTTCCAC
ATTTTTGTTCCATCGGGCGCAGCCGGTAAGGAGGATCGAGTAAGTCTTGG
GGGAGGGACGAAGCAGGGCGCGGGAGGGCTGTTGGATGTCGGTACTGCAG
CTATTGCTTCTGCTGCTGCTGTGGGCTCTCCTCGCGGCAGCTGTAGAAAT
AGTAGTGGGTTGGGAGGATGCTGGGAGAGGCTCGATGACGTCTTCGAAGA
GCAACCAAGCCTGCTCGAATCTCCCCGCCTTGCTATGTGAATCCAACAAT
TGATTTATTAGATCTACCGGTCGAATTCCTTTTGGTAAGGCTCTCTCTTG
TCCTGCAGCTTCTCCTGCTGCTCCTCTTCCCTTTCCTTTTCCCTCTCCAT
CGTTTCTTTCGATGGATGCGGAGCCATTCCCCGACCGCCTCAACCCATCC
AACACGGCCTGTCCCACGGCGTCTAATTGATGGGCTTCCATACACGCTTG
AATCACATATCTGTAATCACGGGCTTGGCCCTGGTTGCGGTGGAGGAGGT
CGAAGGCGCGCGTGAACTCGTGCCGGTTACAAGCGTCTCGGACGTATTTC
CAGGCACGCATAGGGGCAACACCCCTTCTATTCAGAGTGTGAGGGCTGCT
GTTGGCACTGCTCGTGCTTTCGATACTCGCAACTTCGGCGGTGGAAACTA
GTTCTGGGGAGGACGCGGCAGTTGCAGTGGAGGTAGCATTGGTCGAGGCA
GGGGCAAGAGATGAAGACGATGACAAGGCCTGCCGCGGTGTGGTGGTCAC
CGCTTTCAAATGCTTCGCCTGCCGCCGCAAGGTGCGGTCTAGAGATCGAA
GCATGCTTTGAGAAAGTTATCCGTGTCGATGGAGGAGATGGAGGGGTGGG
GAGGTGAGAGGACGAGGCTGGCGTCTCACTATAGGCTGATGATGGCGGAT
TGCTGTGATGATACTCCCCCTAAGGCCACGCAGATATGGCCATCATAACC
CTGTGGTTCTGGTCGTGGTGAAGGGGTTGGTGTTGTGTGCGGGATGCGTG
CTTATGACACGCGGTCAAGACGCAAAGGCTTACCCC
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Coding sequence (CDS) from alignment at scaffold_12:635922..637607+

>mRNA_5169 ID=mRNA_5169|Name=jgi.p|Nanoce1779_2|591605|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_12:635922..637607+ (Nannochloropsis oceanica)
ATGGGCTTCCATACACGCTTGAATCACATATCTGTAATCACGGGCTTGGC
CCTGGTTGCGGTGGAGGAGGTCGAAGGCGCGCGTGAACTCGTGCCGGTTA
CAAGCGTCTCGGACGTATTTCCAGGCACGCATAGGGGCAACACCCCTTCT
ATTCAGAGTGTGAGGGCTGCTGTTGGCACTGCTCGTGCTTTCGATACTCG
CAACTTCGGCGGTGGAAACTAG
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Synonyms
Publications