jgi.p|Nanoce1779_2|591212, mRNA_5044 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591212
Unique NamemRNA_5044
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3179
Alignment locationscaffold_12:312313..315491 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591298
TrackFilteredModels2
ProteinId591212
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:312313..315491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591212gene_5044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591212mRNA_5044-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5044CDS_5044Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=mRNA|length=3179bp
CAGACCTTTGACGTGTCGGCAGAGAGCGGGACGCCCCGAAACGCGGGTCG
TTGACGTTCCTAGACGAAGGGCCTTTAGCGACGCATGATCATCGCCGCAA
CGAGGTCGAAGGTGAGCGTCCATCTCTGCTCAACACCACAATATGCGCAC
GAGCCTCAACTAATGAGGAAATAGATGCATTGCCTTAAATCTTAAGGTTC
GCAGAGCCCTGGTTGATGGTCTAAGCAAGCGCCCGCATCACCACTTTACA
CCGCCCGCCTGTCTTCCCCCACTCCACGTTTGCCAACTCAAACTACCACC
ACCTCTGATACATGGGAATCCAAGGCCTTCTCGGCGCACTCAAGCCCATA
ACTACCCCCGTCCACATTCGTGAGTTGCAAGGGTTGCGCGTGGGGGTCGA
CGCGTATGTGTGGCTGCATCGAGGCGTCTTTGGCTGCGCGGCGGAGCTTT
GCCAGGGCAAGGACACGAAGCGTTACTTGCACGCCTGCTTCAAACGTTTA
AATCTATTGCTCTCCAATGGCATTGGCCAGGTGTGCATTGTATTTGACGG
TGGCCCCTTGCCAGCGAAACGTGGCACGGAAGATGAACGCCGTGCCCGCC
GGGAAGAGAATCGACGAAAAGCTCTGCAATTGGTGGCGGAAGGGAGGGCA
GCTGACGCCTTTCCCTACTTTACCAAAGCGGTGGAGGTGACTCCCGCCAT
GGCCAAGGAATGGATGAACACCATCGAAGCATCGGGATTGCAGAATGTGA
CGTGTGTGGTGGCTCCTTATGAGGCAGATGCCCAGCTAGCTTACCTCTGT
CGCACGGGGCAACTAGACGCGGTCTTTACTGAGGACTCGGATCTGCTGGC
CACAGGCTGTCCCCGCGTATTGTTCAAGCTGGAGGAGGCCACAGGCATGG
CGCAACAAGTTCTGCACGCGGATATTTTCAGGGCGCCTATTCCAGGACTT
GGGGACTTGCGGACGTGGGACGGGGAGGCGTTTTTGGTGATGTGCATACT
GTCAGGGTGTGATTACCTTTCTAGTGTGGCTGGGCTGGGCTTACGATCGG
CTTATCGCTTGGTGCATCGACACAAAACAGCGACCAAGGCGATAAGAGCG
ATGCGATTTGAGGCTAAGCATAAGATACCTGCTGACTACGAGGCACGTTT
CCTTGAGGCCTTGAAAACGTTTAGGCATCAACGAGTGTTTGACCCCGTAG
CGCGGGTCTTGACTCATGTCCACCCCCTGCCACTTGGCAACGCCCCTATC
CCTACTCATCCCCCTGCTTCTGTTCTTGCTGCTGCTGCCTCTACAATGGA
CTATTTGGGTCCGTGGATGGAGGATGCCTTGGCTGCGGAGATTGCCGACG
GCATCATCGATCCAATCACTCTGGCACCATTTCCTCCCTCCCTTTCTACC
ACTCACTTTGCTGCTACTTGTGCTGCTTCCACTACAGTTGCTGCTTGTGC
TGCCGCTGCATCAGCTTCAGCTTCGCAGCCGAAGATCTCCGCGTTCCTGA
CGGCAGCAAGACACCGGCCGCAGGAGGGCGAGAACAGGGACGGGGAAGAG
GAAGAGGAAGGGGAAGCGAATGGTGGTGTCACTACGACTGATTCTTCACG
CTTTAGTGGAGCTGTAAGGAGGAATGTCATCTACCGTCCCGGGCTTCGCA
AGAGTTTGGCGCCTGTGCCTTTGCATCAAAACAATCGACTCACAAGTTAT
TTGAACAACAAAGCGGCCGCGACAGTATCAGTAGCTGCAGCGATGAAAAG
CAGCAGCAGTAGTGGTAGCTTCAGGACTTTGCCTGCAATGCTTCGGAAGA
GGAAGAGTGTAAGCACCAACAGTGGTGGCAGCGGCCGCAGCTCTGGTGCT
GAGGGAAGTGCTTCTGTGTCATCGATGCCCCTACCACCAGAACGTCATGA
GGACGCACCTGACAAGGCAACTGGGACAGGAGGAGCCGCAGTAGCATCAA
CCACTGGCATTTTGTCTCGCTTGCCGCACCTGTCGACCTGGTTTGGAGGG
AAAGGCGAAAACAAGGCGCACACAAAGAAGGAAAATAGATCTAGCGGGGG
TTTGCCTTCCTTGTCGTCGCCCTCATCCTTATCACCATCACCATCGTCAT
TATTATCATCATTGTCATCATCATCCTTGGTATCGTCATATTGGAAACGG
CAACGAACATTAGGCGGTCGGCCCACGGCTTTCACATTGCGGCGTTTTGC
CTGTGGTGGTGGTGCCTGTGCTGGTGGTGCCACATCCGCTGCCGAGGAAG
AGGAAGAAAGGGAGGAAGTGGAGGAAGGAGGAAGCAGGAGACCAAAAATA
AGGTTAAGCGGCAGCAAGGGAGGAGCAGACGGAGGGTATGGCTCTGATTC
GTTGCAGCCGCCCACGCCGGGGACGCCATATGGAGAATCAGCAGCAGCAA
CAGCATCTTCAGCAGAAGGAGCAGCAGTAGCCGCAGCACGTCCGCTTAAC
CAAGCTGACTTGGACGAGACGGGTGATGATGACGGTGTGAGGGAGATGGC
TGTGGTTAACGCAGCATCAGCAGCGGTAGCAGCAAGAACGACTACCATGC
ATGAGTCTAGTCATGGTATTAGCACGACCTTAATTTCGTTTGAGCCCTTT
TTGTATCAAAGTGATGATGATAATGCTTCTGATAATTTGGGATTGAAGAG
GGGGCTGGGGAAAAGCTTGGCCACAACGACAGCTTTAAATAAGACTGTCA
TTGGGCCTACTGCTGCTGTCACCTCCCAGTCCACCGTTAATTTCCGTCGC
CGCCGACCTCGAGATAATCAAAAGCAGTCGCCAGCAGCAGCAACAACAGG
AGAAAGAGGAGGAGAGGGAGGACGGGTAGAGGAGGGAGACGGGAAAATGT
CCCTTTCGCTGGACGCCTTTAAGTTTGATGCGGGTGATGGACCTTTTCTG
TCCTCTTTGATGCCATGATCAGCAGGAGAGAGCCAAACGGAATGAAACGA
TCAGATGGCGGAATGGCAACATGAAAAGATGCCAGAGAGAGATGATCGCA
GACTTTTGCCCTATTAGACTGGAAAGCACACAATCAGTCAATAATAACGC
AGTGTACAAAACTTGATGTCACAGAAATAATTAGGGCAAGAAGTGGGAAA
CGGCGAAACAAGAGCCAGCCTTTCTTTTAGATCATGAGCAGCGAAAATCT
GCATTCCAAAAAGTGTCGGCCTTTGGTAT
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protein sequence of jgi.p|Nanoce1779_2|591212

>mRNA_5044-protein ID=mRNA_5044-protein|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=polypeptide|length=869bp
MGIQGLLGALKPITTPVHIRELQGLRVGVDAYVWLHRGVFGCAAELCQGK
DTKRYLHACFKRLNLLLSNGIGQVCIVFDGGPLPAKRGTEDERRARREEN
RRKALQLVAEGRAADAFPYFTKAVEVTPAMAKEWMNTIEASGLQNVTCVV
APYEADAQLAYLCRTGQLDAVFTEDSDLLATGCPRVLFKLEEATGMAQQV
LHADIFRAPIPGLGDLRTWDGEAFLVMCILSGCDYLSSVAGLGLRSAYRL
VHRHKTATKAIRAMRFEAKHKIPADYEARFLEALKTFRHQRVFDPVARVL
THVHPLPLGNAPIPTHPPASVLAAAASTMDYLGPWMEDALAAEIADGIID
PITLAPFPPSLSTTHFAATCAASTTVAACAAAASASASQPKISAFLTAAR
HRPQEGENRDGEEEEEGEANGGVTTTDSSRFSGAVRRNVIYRPGLRKSLA
PVPLHQNNRLTSYLNNKAAATVSVAAAMKSSSSSGSFRTLPAMLRKRKSV
STNSGGSGRSSGAEGSASVSSMPLPPERHEDAPDKATGTGGAAVASTTGI
LSRLPHLSTWFGGKGENKAHTKKENRSSGGLPSLSSPSSLSPSPSSLLSS
LSSSSLVSSYWKRQRTLGGRPTAFTLRRFACGGGACAGGATSAAEEEEER
EEVEEGGSRRPKIRLSGSKGGADGGYGSDSLQPPTPGTPYGESAAATASS
AEGAAVAAARPLNQADLDETGDDDGVREMAVVNAASAAVAARTTTMHESS
HGISTTLISFEPFLYQSDDDNASDNLGLKRGLGKSLATTTALNKTVIGPT
AAVTSQSTVNFRRRRPRDNQKQSPAAATTGERGGEGGRVEEGDGKMSLSL
DAFKFDAGDGPFLSSLMP*
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mRNA from alignment at scaffold_12:312313..315491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=mRNA|length=3179bp|location=Sequence derived from alignment at scaffold_12:312313..315491+ (Nannochloropsis oceanica)
CAGACCTTTGACGTGTCGGCAGAGAGCGGGACGCCCCGAAACGCGGGTCG TTGACGTTCCTAGACGAAGGGCCTTTAGCGACGCATGATCATCGCCGCAA CGAGGTCGAAGGTGAGCGTCCATCTCTGCTCAACACCACAATATGCGCAC GAGCCTCAACTAATGAGGAAATAGATGCATTGCCTTAAATCTTAAGGTTC GCAGAGCCCTGGTTGATGGTCTAAGCAAGCGCCCGCATCACCACTTTACA CCGCCCGCCTGTCTTCCCCCACTCCACGTTTGCCAACTCAAACTACCACC ACCTCTGATACATGGGAATCCAAGGCCTTCTCGGCGCACTCAAGCCCATA ACTACCCCCGTCCACATTCGTGAGTTGCAAGGGTTGCGCGTGGGGGTCGA CGCGTATGTGTGGCTGCATCGAGGCGTCTTTGGCTGCGCGGCGGAGCTTT GCCAGGGCAAGGACACGAAGCGTTACTTGCACGCCTGCTTCAAACGTTTA AATCTATTGCTCTCCAATGGCATTGGCCAGGTGTGCATTGTATTTGACGG TGGCCCCTTGCCAGCGAAACGTGGCACGGAAGATGAACGCCGTGCCCGCC GGGAAGAGAATCGACGAAAAGCTCTGCAATTGGTGGCGGAAGGGAGGGCA GCTGACGCCTTTCCCTACTTTACCAAAGCGGTGGAGGTGACTCCCGCCAT GGCCAAGGAATGGATGAACACCATCGAAGCATCGGGATTGCAGAATGTGA CGTGTGTGGTGGCTCCTTATGAGGCAGATGCCCAGCTAGCTTACCTCTGT CGCACGGGGCAACTAGACGCGGTCTTTACTGAGGACTCGGATCTGCTGGC CACAGGCTGTCCCCGCGTATTGTTCAAGCTGGAGGAGGCCACAGGCATGG CGCAACAAGTTCTGCACGCGGATATTTTCAGGGCGCCTATTCCAGGACTT GGGGACTTGCGGACGTGGGACGGGGAGGCGTTTTTGGTGATGTGCATACT GTCAGGGTGTGATTACCTTTCTAGTGTGGCTGGGCTGGGCTTACGATCGG CTTATCGCTTGGTGCATCGACACAAAACAGCGACCAAGGCGATAAGAGCG ATGCGATTTGAGGCTAAGCATAAGATACCTGCTGACTACGAGGCACGTTT CCTTGAGGCCTTGAAAACGTTTAGGCATCAACGAGTGTTTGACCCCGTAG CGCGGGTCTTGACTCATGTCCACCCCCTGCCACTTGGCAACGCCCCTATC CCTACTCATCCCCCTGCTTCTGTTCTTGCTGCTGCTGCCTCTACAATGGA CTATTTGGGTCCGTGGATGGAGGATGCCTTGGCTGCGGAGATTGCCGACG GCATCATCGATCCAATCACTCTGGCACCATTTCCTCCCTCCCTTTCTACC ACTCACTTTGCTGCTACTTGTGCTGCTTCCACTACAGTTGCTGCTTGTGC TGCCGCTGCATCAGCTTCAGCTTCGCAGCCGAAGATCTCCGCGTTCCTGA CGGCAGCAAGACACCGGCCGCAGGAGGGCGAGAACAGGGACGGGGAAGAG GAAGAGGAAGGGGAAGCGAATGGTGGTGTCACTACGACTGATTCTTCACG CTTTAGTGGAGCTGTAAGGAGGAATGTCATCTACCGTCCCGGGCTTCGCA AGAGTTTGGCGCCTGTGCCTTTGCATCAAAACAATCGACTCACAAGTTAT TTGAACAACAAAGCGGCCGCGACAGTATCAGTAGCTGCAGCGATGAAAAG CAGCAGCAGTAGTGGTAGCTTCAGGACTTTGCCTGCAATGCTTCGGAAGA GGAAGAGTGTAAGCACCAACAGTGGTGGCAGCGGCCGCAGCTCTGGTGCT GAGGGAAGTGCTTCTGTGTCATCGATGCCCCTACCACCAGAACGTCATGA GGACGCACCTGACAAGGCAACTGGGACAGGAGGAGCCGCAGTAGCATCAA CCACTGGCATTTTGTCTCGCTTGCCGCACCTGTCGACCTGGTTTGGAGGG AAAGGCGAAAACAAGGCGCACACAAAGAAGGAAAATAGATCTAGCGGGGG TTTGCCTTCCTTGTCGTCGCCCTCATCCTTATCACCATCACCATCGTCAT TATTATCATCATTGTCATCATCATCCTTGGTATCGTCATATTGGAAACGG CAACGAACATTAGGCGGTCGGCCCACGGCTTTCACATTGCGGCGTTTTGC CTGTGGTGGTGGTGCCTGTGCTGGTGGTGCCACATCCGCTGCCGAGGAAG AGGAAGAAAGGGAGGAAGTGGAGGAAGGAGGAAGCAGGAGACCAAAAATA AGGTTAAGCGGCAGCAAGGGAGGAGCAGACGGAGGGTATGGCTCTGATTC GTTGCAGCCGCCCACGCCGGGGACGCCATATGGAGAATCAGCAGCAGCAA CAGCATCTTCAGCAGAAGGAGCAGCAGTAGCCGCAGCACGTCCGCTTAAC CAAGCTGACTTGGACGAGACGGGTGATGATGACGGTGTGAGGGAGATGGC TGTGGTTAACGCAGCATCAGCAGCGGTAGCAGCAAGAACGACTACCATGC ATGAGTCTAGTCATGGTATTAGCACGACCTTAATTTCGTTTGAGCCCTTT TTGTATCAAAGTGATGATGATAATGCTTCTGATAATTTGGGATTGAAGAG GGGGCTGGGGAAAAGCTTGGCCACAACGACAGCTTTAAATAAGACTGTCA TTGGGCCTACTGCTGCTGTCACCTCCCAGTCCACCGTTAATTTCCGTCGC CGCCGACCTCGAGATAATCAAAAGCAGTCGCCAGCAGCAGCAACAACAGG AGAAAGAGGAGGAGAGGGAGGACGGGTAGAGGAGGGAGACGGGAAAATGT CCCTTTCGCTGGACGCCTTTAAGTTTGATGCGGGTGATGGACCTTTTCTG TCCTCTTTGATGCCATGATCAGCAGGAGAGAGCCAAACGGAATGAAACGA TCAGATGGCGGAATGGCAACATGAAAAGATGCCAGAGAGAGATGATCGCA GACTTTTGCCCTATTAGACTGGAAAGCACACAATCAGTCAATAATAACGC AGTGTACAAAACTTGATGTCACAGAAATAATTAGGGCAAGAAGTGGGAAA CGGCGAAACAAGAGCCAGCCTTTCTTTTAGATCATGAGCAGCGAAAATCT GCATTCCAAAAAGTGTCGGCCTTTGGTAT
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Coding sequence (CDS) from alignment at scaffold_12:312313..315491+

>mRNA_5044 ID=mRNA_5044|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=CDS|length=2607bp|location=Sequence derived from alignment at scaffold_12:312313..315491+ (Nannochloropsis oceanica)
ATGGGAATCCAAGGCCTTCTCGGCGCACTCAAGCCCATAACTACCCCCGT
CCACATTCGTGAGTTGCAAGGGTTGCGCGTGGGGGTCGACGCGTATGTGT
GGCTGCATCGAGGCGTCTTTGGCTGCGCGGCGGAGCTTTGCCAGGGCAAG
GACACGAAGCGTTACTTGCACGCCTGCTTCAAACGTTTAAATCTATTGCT
CTCCAATGGCATTGGCCAGGTGTGCATTGTATTTGACGGTGGCCCCTTGC
CAGCGAAACGTGGCACGGAAGATGAACGCCGTGCCCGCCGGGAAGAGAAT
CGACGAAAAGCTCTGCAATTGGTGGCGGAAGGGAGGGCAGCTGACGCCTT
TCCCTACTTTACCAAAGCGGTGGAGGTGACTCCCGCCATGGCCAAGGAAT
GGATGAACACCATCGAAGCATCGGGATTGCAGAATGTGACGTGTGTGGTG
GCTCCTTATGAGGCAGATGCCCAGCTAGCTTACCTCTGTCGCACGGGGCA
ACTAGACGCGGTCTTTACTGAGGACTCGGATCTGCTGGCCACAGGCTGTC
CCCGCGTATTGTTCAAGCTGGAGGAGGCCACAGGCATGGCGCAACAAGTT
CTGCACGCGGATATTTTCAGGGCGCCTATTCCAGGACTTGGGGACTTGCG
GACGTGGGACGGGGAGGCGTTTTTGGTGATGTGCATACTGTCAGGGTGTG
ATTACCTTTCTAGTGTGGCTGGGCTGGGCTTACGATCGGCTTATCGCTTG
GTGCATCGACACAAAACAGCGACCAAGGCGATAAGAGCGATGCGATTTGA
GGCTAAGCATAAGATACCTGCTGACTACGAGGCACGTTTCCTTGAGGCCT
TGAAAACGTTTAGGCATCAACGAGTGTTTGACCCCGTAGCGCGGGTCTTG
ACTCATGTCCACCCCCTGCCACTTGGCAACGCCCCTATCCCTACTCATCC
CCCTGCTTCTGTTCTTGCTGCTGCTGCCTCTACAATGGACTATTTGGGTC
CGTGGATGGAGGATGCCTTGGCTGCGGAGATTGCCGACGGCATCATCGAT
CCAATCACTCTGGCACCATTTCCTCCCTCCCTTTCTACCACTCACTTTGC
TGCTACTTGTGCTGCTTCCACTACAGTTGCTGCTTGTGCTGCCGCTGCAT
CAGCTTCAGCTTCGCAGCCGAAGATCTCCGCGTTCCTGACGGCAGCAAGA
CACCGGCCGCAGGAGGGCGAGAACAGGGACGGGGAAGAGGAAGAGGAAGG
GGAAGCGAATGGTGGTGTCACTACGACTGATTCTTCACGCTTTAGTGGAG
CTGTAAGGAGGAATGTCATCTACCGTCCCGGGCTTCGCAAGAGTTTGGCG
CCTGTGCCTTTGCATCAAAACAATCGACTCACAAGTTATTTGAACAACAA
AGCGGCCGCGACAGTATCAGTAGCTGCAGCGATGAAAAGCAGCAGCAGTA
GTGGTAGCTTCAGGACTTTGCCTGCAATGCTTCGGAAGAGGAAGAGTGTA
AGCACCAACAGTGGTGGCAGCGGCCGCAGCTCTGGTGCTGAGGGAAGTGC
TTCTGTGTCATCGATGCCCCTACCACCAGAACGTCATGAGGACGCACCTG
ACAAGGCAACTGGGACAGGAGGAGCCGCAGTAGCATCAACCACTGGCATT
TTGTCTCGCTTGCCGCACCTGTCGACCTGGTTTGGAGGGAAAGGCGAAAA
CAAGGCGCACACAAAGAAGGAAAATAGATCTAGCGGGGGTTTGCCTTCCT
TGTCGTCGCCCTCATCCTTATCACCATCACCATCGTCATTATTATCATCA
TTGTCATCATCATCCTTGGTATCGTCATATTGGAAACGGCAACGAACATT
AGGCGGTCGGCCCACGGCTTTCACATTGCGGCGTTTTGCCTGTGGTGGTG
GTGCCTGTGCTGGTGGTGCCACATCCGCTGCCGAGGAAGAGGAAGAAAGG
GAGGAAGTGGAGGAAGGAGGAAGCAGGAGACCAAAAATAAGGTTAAGCGG
CAGCAAGGGAGGAGCAGACGGAGGGTATGGCTCTGATTCGTTGCAGCCGC
CCACGCCGGGGACGCCATATGGAGAATCAGCAGCAGCAACAGCATCTTCA
GCAGAAGGAGCAGCAGTAGCCGCAGCACGTCCGCTTAACCAAGCTGACTT
GGACGAGACGGGTGATGATGACGGTGTGAGGGAGATGGCTGTGGTTAACG
CAGCATCAGCAGCGGTAGCAGCAAGAACGACTACCATGCATGAGTCTAGT
CATGGTATTAGCACGACCTTAATTTCGTTTGAGCCCTTTTTGTATCAAAG
TGATGATGATAATGCTTCTGATAATTTGGGATTGAAGAGGGGGCTGGGGA
AAAGCTTGGCCACAACGACAGCTTTAAATAAGACTGTCATTGGGCCTACT
GCTGCTGTCACCTCCCAGTCCACCGTTAATTTCCGTCGCCGCCGACCTCG
AGATAATCAAAAGCAGTCGCCAGCAGCAGCAACAACAGGAGAAAGAGGAG
GAGAGGGAGGACGGGTAGAGGAGGGAGACGGGAAAATGTCCCTTTCGCTG
GACGCCTTTAAGTTTGATGCGGGTGATGGACCTTTTCTGTCCTCTTTGAT
GCCATGA
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Synonyms
Publications