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Properties
Property Name | Value |
TranscriptId | 591298 |
Track | FilteredModels2 |
ProteinId | 591212 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_12 | supercontig | scaffold_12:312313..315491 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5044 ID=mRNA_5044|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=mRNA|length=3179bp CAGACCTTTGACGTGTCGGCAGAGAGCGGGACGCCCCGAAACGCGGGTCG TTGACGTTCCTAGACGAAGGGCCTTTAGCGACGCATGATCATCGCCGCAA CGAGGTCGAAGGTGAGCGTCCATCTCTGCTCAACACCACAATATGCGCAC GAGCCTCAACTAATGAGGAAATAGATGCATTGCCTTAAATCTTAAGGTTC GCAGAGCCCTGGTTGATGGTCTAAGCAAGCGCCCGCATCACCACTTTACA CCGCCCGCCTGTCTTCCCCCACTCCACGTTTGCCAACTCAAACTACCACC ACCTCTGATACATGGGAATCCAAGGCCTTCTCGGCGCACTCAAGCCCATA ACTACCCCCGTCCACATTCGTGAGTTGCAAGGGTTGCGCGTGGGGGTCGA CGCGTATGTGTGGCTGCATCGAGGCGTCTTTGGCTGCGCGGCGGAGCTTT GCCAGGGCAAGGACACGAAGCGTTACTTGCACGCCTGCTTCAAACGTTTA AATCTATTGCTCTCCAATGGCATTGGCCAGGTGTGCATTGTATTTGACGG TGGCCCCTTGCCAGCGAAACGTGGCACGGAAGATGAACGCCGTGCCCGCC GGGAAGAGAATCGACGAAAAGCTCTGCAATTGGTGGCGGAAGGGAGGGCA GCTGACGCCTTTCCCTACTTTACCAAAGCGGTGGAGGTGACTCCCGCCAT GGCCAAGGAATGGATGAACACCATCGAAGCATCGGGATTGCAGAATGTGA CGTGTGTGGTGGCTCCTTATGAGGCAGATGCCCAGCTAGCTTACCTCTGT CGCACGGGGCAACTAGACGCGGTCTTTACTGAGGACTCGGATCTGCTGGC CACAGGCTGTCCCCGCGTATTGTTCAAGCTGGAGGAGGCCACAGGCATGG CGCAACAAGTTCTGCACGCGGATATTTTCAGGGCGCCTATTCCAGGACTT GGGGACTTGCGGACGTGGGACGGGGAGGCGTTTTTGGTGATGTGCATACT GTCAGGGTGTGATTACCTTTCTAGTGTGGCTGGGCTGGGCTTACGATCGG CTTATCGCTTGGTGCATCGACACAAAACAGCGACCAAGGCGATAAGAGCG ATGCGATTTGAGGCTAAGCATAAGATACCTGCTGACTACGAGGCACGTTT CCTTGAGGCCTTGAAAACGTTTAGGCATCAACGAGTGTTTGACCCCGTAG CGCGGGTCTTGACTCATGTCCACCCCCTGCCACTTGGCAACGCCCCTATC CCTACTCATCCCCCTGCTTCTGTTCTTGCTGCTGCTGCCTCTACAATGGA CTATTTGGGTCCGTGGATGGAGGATGCCTTGGCTGCGGAGATTGCCGACG GCATCATCGATCCAATCACTCTGGCACCATTTCCTCCCTCCCTTTCTACC ACTCACTTTGCTGCTACTTGTGCTGCTTCCACTACAGTTGCTGCTTGTGC TGCCGCTGCATCAGCTTCAGCTTCGCAGCCGAAGATCTCCGCGTTCCTGA CGGCAGCAAGACACCGGCCGCAGGAGGGCGAGAACAGGGACGGGGAAGAG GAAGAGGAAGGGGAAGCGAATGGTGGTGTCACTACGACTGATTCTTCACG CTTTAGTGGAGCTGTAAGGAGGAATGTCATCTACCGTCCCGGGCTTCGCA AGAGTTTGGCGCCTGTGCCTTTGCATCAAAACAATCGACTCACAAGTTAT TTGAACAACAAAGCGGCCGCGACAGTATCAGTAGCTGCAGCGATGAAAAG CAGCAGCAGTAGTGGTAGCTTCAGGACTTTGCCTGCAATGCTTCGGAAGA GGAAGAGTGTAAGCACCAACAGTGGTGGCAGCGGCCGCAGCTCTGGTGCT GAGGGAAGTGCTTCTGTGTCATCGATGCCCCTACCACCAGAACGTCATGA GGACGCACCTGACAAGGCAACTGGGACAGGAGGAGCCGCAGTAGCATCAA CCACTGGCATTTTGTCTCGCTTGCCGCACCTGTCGACCTGGTTTGGAGGG AAAGGCGAAAACAAGGCGCACACAAAGAAGGAAAATAGATCTAGCGGGGG TTTGCCTTCCTTGTCGTCGCCCTCATCCTTATCACCATCACCATCGTCAT TATTATCATCATTGTCATCATCATCCTTGGTATCGTCATATTGGAAACGG CAACGAACATTAGGCGGTCGGCCCACGGCTTTCACATTGCGGCGTTTTGC CTGTGGTGGTGGTGCCTGTGCTGGTGGTGCCACATCCGCTGCCGAGGAAG AGGAAGAAAGGGAGGAAGTGGAGGAAGGAGGAAGCAGGAGACCAAAAATA AGGTTAAGCGGCAGCAAGGGAGGAGCAGACGGAGGGTATGGCTCTGATTC GTTGCAGCCGCCCACGCCGGGGACGCCATATGGAGAATCAGCAGCAGCAA CAGCATCTTCAGCAGAAGGAGCAGCAGTAGCCGCAGCACGTCCGCTTAAC CAAGCTGACTTGGACGAGACGGGTGATGATGACGGTGTGAGGGAGATGGC TGTGGTTAACGCAGCATCAGCAGCGGTAGCAGCAAGAACGACTACCATGC ATGAGTCTAGTCATGGTATTAGCACGACCTTAATTTCGTTTGAGCCCTTT TTGTATCAAAGTGATGATGATAATGCTTCTGATAATTTGGGATTGAAGAG GGGGCTGGGGAAAAGCTTGGCCACAACGACAGCTTTAAATAAGACTGTCA TTGGGCCTACTGCTGCTGTCACCTCCCAGTCCACCGTTAATTTCCGTCGC CGCCGACCTCGAGATAATCAAAAGCAGTCGCCAGCAGCAGCAACAACAGG AGAAAGAGGAGGAGAGGGAGGACGGGTAGAGGAGGGAGACGGGAAAATGT CCCTTTCGCTGGACGCCTTTAAGTTTGATGCGGGTGATGGACCTTTTCTG TCCTCTTTGATGCCATGATCAGCAGGAGAGAGCCAAACGGAATGAAACGA TCAGATGGCGGAATGGCAACATGAAAAGATGCCAGAGAGAGATGATCGCA GACTTTTGCCCTATTAGACTGGAAAGCACACAATCAGTCAATAATAACGC AGTGTACAAAACTTGATGTCACAGAAATAATTAGGGCAAGAAGTGGGAAA CGGCGAAACAAGAGCCAGCCTTTCTTTTAGATCATGAGCAGCGAAAATCT GCATTCCAAAAAGTGTCGGCCTTTGGTAT back to topprotein sequence of jgi.p|Nanoce1779_2|591212 >mRNA_5044-protein ID=mRNA_5044-protein|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=polypeptide|length=869bp MGIQGLLGALKPITTPVHIRELQGLRVGVDAYVWLHRGVFGCAAELCQGK DTKRYLHACFKRLNLLLSNGIGQVCIVFDGGPLPAKRGTEDERRARREEN RRKALQLVAEGRAADAFPYFTKAVEVTPAMAKEWMNTIEASGLQNVTCVV APYEADAQLAYLCRTGQLDAVFTEDSDLLATGCPRVLFKLEEATGMAQQV LHADIFRAPIPGLGDLRTWDGEAFLVMCILSGCDYLSSVAGLGLRSAYRL VHRHKTATKAIRAMRFEAKHKIPADYEARFLEALKTFRHQRVFDPVARVL THVHPLPLGNAPIPTHPPASVLAAAASTMDYLGPWMEDALAAEIADGIID PITLAPFPPSLSTTHFAATCAASTTVAACAAAASASASQPKISAFLTAAR HRPQEGENRDGEEEEEGEANGGVTTTDSSRFSGAVRRNVIYRPGLRKSLA PVPLHQNNRLTSYLNNKAAATVSVAAAMKSSSSSGSFRTLPAMLRKRKSV STNSGGSGRSSGAEGSASVSSMPLPPERHEDAPDKATGTGGAAVASTTGI LSRLPHLSTWFGGKGENKAHTKKENRSSGGLPSLSSPSSLSPSPSSLLSS LSSSSLVSSYWKRQRTLGGRPTAFTLRRFACGGGACAGGATSAAEEEEER EEVEEGGSRRPKIRLSGSKGGADGGYGSDSLQPPTPGTPYGESAAATASS AEGAAVAAARPLNQADLDETGDDDGVREMAVVNAASAAVAARTTTMHESS HGISTTLISFEPFLYQSDDDNASDNLGLKRGLGKSLATTTALNKTVIGPT AAVTSQSTVNFRRRRPRDNQKQSPAAATTGERGGEGGRVEEGDGKMSLSL DAFKFDAGDGPFLSSLMP* back to topmRNA from alignment at scaffold_12:312313..315491+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5044 ID=mRNA_5044|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=mRNA|length=3179bp|location=Sequence derived from alignment at scaffold_12:312313..315491+ (Nannochloropsis oceanica) CAGACCTTTGACGTGTCGGCAGAGAGCGGGACGCCCCGAAACGCGGGTCG
TTGACGTTCCTAGACGAAGGGCCTTTAGCGACGCATGATCATCGCCGCAA
CGAGGTCGAAGGTGAGCGTCCATCTCTGCTCAACACCACAATATGCGCAC
GAGCCTCAACTAATGAGGAAATAGATGCATTGCCTTAAATCTTAAGGTTC
GCAGAGCCCTGGTTGATGGTCTAAGCAAGCGCCCGCATCACCACTTTACA
CCGCCCGCCTGTCTTCCCCCACTCCACGTTTGCCAACTCAAACTACCACC
ACCTCTGATACATGGGAATCCAAGGCCTTCTCGGCGCACTCAAGCCCATA
ACTACCCCCGTCCACATTCGTGAGTTGCAAGGGTTGCGCGTGGGGGTCGA
CGCGTATGTGTGGCTGCATCGAGGCGTCTTTGGCTGCGCGGCGGAGCTTT
GCCAGGGCAAGGACACGAAGCGTTACTTGCACGCCTGCTTCAAACGTTTA
AATCTATTGCTCTCCAATGGCATTGGCCAGGTGTGCATTGTATTTGACGG
TGGCCCCTTGCCAGCGAAACGTGGCACGGAAGATGAACGCCGTGCCCGCC
GGGAAGAGAATCGACGAAAAGCTCTGCAATTGGTGGCGGAAGGGAGGGCA
GCTGACGCCTTTCCCTACTTTACCAAAGCGGTGGAGGTGACTCCCGCCAT
GGCCAAGGAATGGATGAACACCATCGAAGCATCGGGATTGCAGAATGTGA
CGTGTGTGGTGGCTCCTTATGAGGCAGATGCCCAGCTAGCTTACCTCTGT
CGCACGGGGCAACTAGACGCGGTCTTTACTGAGGACTCGGATCTGCTGGC
CACAGGCTGTCCCCGCGTATTGTTCAAGCTGGAGGAGGCCACAGGCATGG
CGCAACAAGTTCTGCACGCGGATATTTTCAGGGCGCCTATTCCAGGACTT
GGGGACTTGCGGACGTGGGACGGGGAGGCGTTTTTGGTGATGTGCATACT
GTCAGGGTGTGATTACCTTTCTAGTGTGGCTGGGCTGGGCTTACGATCGG
CTTATCGCTTGGTGCATCGACACAAAACAGCGACCAAGGCGATAAGAGCG
ATGCGATTTGAGGCTAAGCATAAGATACCTGCTGACTACGAGGCACGTTT
CCTTGAGGCCTTGAAAACGTTTAGGCATCAACGAGTGTTTGACCCCGTAG
CGCGGGTCTTGACTCATGTCCACCCCCTGCCACTTGGCAACGCCCCTATC
CCTACTCATCCCCCTGCTTCTGTTCTTGCTGCTGCTGCCTCTACAATGGA
CTATTTGGGTCCGTGGATGGAGGATGCCTTGGCTGCGGAGATTGCCGACG
GCATCATCGATCCAATCACTCTGGCACCATTTCCTCCCTCCCTTTCTACC
ACTCACTTTGCTGCTACTTGTGCTGCTTCCACTACAGTTGCTGCTTGTGC
TGCCGCTGCATCAGCTTCAGCTTCGCAGCCGAAGATCTCCGCGTTCCTGA
CGGCAGCAAGACACCGGCCGCAGGAGGGCGAGAACAGGGACGGGGAAGAG
GAAGAGGAAGGGGAAGCGAATGGTGGTGTCACTACGACTGATTCTTCACG
CTTTAGTGGAGCTGTAAGGAGGAATGTCATCTACCGTCCCGGGCTTCGCA
AGAGTTTGGCGCCTGTGCCTTTGCATCAAAACAATCGACTCACAAGTTAT
TTGAACAACAAAGCGGCCGCGACAGTATCAGTAGCTGCAGCGATGAAAAG
CAGCAGCAGTAGTGGTAGCTTCAGGACTTTGCCTGCAATGCTTCGGAAGA
GGAAGAGTGTAAGCACCAACAGTGGTGGCAGCGGCCGCAGCTCTGGTGCT
GAGGGAAGTGCTTCTGTGTCATCGATGCCCCTACCACCAGAACGTCATGA
GGACGCACCTGACAAGGCAACTGGGACAGGAGGAGCCGCAGTAGCATCAA
CCACTGGCATTTTGTCTCGCTTGCCGCACCTGTCGACCTGGTTTGGAGGG
AAAGGCGAAAACAAGGCGCACACAAAGAAGGAAAATAGATCTAGCGGGGG
TTTGCCTTCCTTGTCGTCGCCCTCATCCTTATCACCATCACCATCGTCAT
TATTATCATCATTGTCATCATCATCCTTGGTATCGTCATATTGGAAACGG
CAACGAACATTAGGCGGTCGGCCCACGGCTTTCACATTGCGGCGTTTTGC
CTGTGGTGGTGGTGCCTGTGCTGGTGGTGCCACATCCGCTGCCGAGGAAG
AGGAAGAAAGGGAGGAAGTGGAGGAAGGAGGAAGCAGGAGACCAAAAATA
AGGTTAAGCGGCAGCAAGGGAGGAGCAGACGGAGGGTATGGCTCTGATTC
GTTGCAGCCGCCCACGCCGGGGACGCCATATGGAGAATCAGCAGCAGCAA
CAGCATCTTCAGCAGAAGGAGCAGCAGTAGCCGCAGCACGTCCGCTTAAC
CAAGCTGACTTGGACGAGACGGGTGATGATGACGGTGTGAGGGAGATGGC
TGTGGTTAACGCAGCATCAGCAGCGGTAGCAGCAAGAACGACTACCATGC
ATGAGTCTAGTCATGGTATTAGCACGACCTTAATTTCGTTTGAGCCCTTT
TTGTATCAAAGTGATGATGATAATGCTTCTGATAATTTGGGATTGAAGAG
GGGGCTGGGGAAAAGCTTGGCCACAACGACAGCTTTAAATAAGACTGTCA
TTGGGCCTACTGCTGCTGTCACCTCCCAGTCCACCGTTAATTTCCGTCGC
CGCCGACCTCGAGATAATCAAAAGCAGTCGCCAGCAGCAGCAACAACAGG
AGAAAGAGGAGGAGAGGGAGGACGGGTAGAGGAGGGAGACGGGAAAATGT
CCCTTTCGCTGGACGCCTTTAAGTTTGATGCGGGTGATGGACCTTTTCTG
TCCTCTTTGATGCCATGATCAGCAGGAGAGAGCCAAACGGAATGAAACGA
TCAGATGGCGGAATGGCAACATGAAAAGATGCCAGAGAGAGATGATCGCA
GACTTTTGCCCTATTAGACTGGAAAGCACACAATCAGTCAATAATAACGC
AGTGTACAAAACTTGATGTCACAGAAATAATTAGGGCAAGAAGTGGGAAA
CGGCGAAACAAGAGCCAGCCTTTCTTTTAGATCATGAGCAGCGAAAATCT
GCATTCCAAAAAGTGTCGGCCTTTGGTAT back to topCoding sequence (CDS) from alignment at scaffold_12:312313..315491+ >mRNA_5044 ID=mRNA_5044|Name=jgi.p|Nanoce1779_2|591212|organism=Nannochloropsis oceanica|type=CDS|length=2607bp|location=Sequence derived from alignment at scaffold_12:312313..315491+ (Nannochloropsis oceanica) ATGGGAATCCAAGGCCTTCTCGGCGCACTCAAGCCCATAACTACCCCCGT CCACATTCGTGAGTTGCAAGGGTTGCGCGTGGGGGTCGACGCGTATGTGT GGCTGCATCGAGGCGTCTTTGGCTGCGCGGCGGAGCTTTGCCAGGGCAAG GACACGAAGCGTTACTTGCACGCCTGCTTCAAACGTTTAAATCTATTGCT CTCCAATGGCATTGGCCAGGTGTGCATTGTATTTGACGGTGGCCCCTTGC CAGCGAAACGTGGCACGGAAGATGAACGCCGTGCCCGCCGGGAAGAGAAT CGACGAAAAGCTCTGCAATTGGTGGCGGAAGGGAGGGCAGCTGACGCCTT TCCCTACTTTACCAAAGCGGTGGAGGTGACTCCCGCCATGGCCAAGGAAT GGATGAACACCATCGAAGCATCGGGATTGCAGAATGTGACGTGTGTGGTG GCTCCTTATGAGGCAGATGCCCAGCTAGCTTACCTCTGTCGCACGGGGCA ACTAGACGCGGTCTTTACTGAGGACTCGGATCTGCTGGCCACAGGCTGTC CCCGCGTATTGTTCAAGCTGGAGGAGGCCACAGGCATGGCGCAACAAGTT CTGCACGCGGATATTTTCAGGGCGCCTATTCCAGGACTTGGGGACTTGCG GACGTGGGACGGGGAGGCGTTTTTGGTGATGTGCATACTGTCAGGGTGTG ATTACCTTTCTAGTGTGGCTGGGCTGGGCTTACGATCGGCTTATCGCTTG GTGCATCGACACAAAACAGCGACCAAGGCGATAAGAGCGATGCGATTTGA GGCTAAGCATAAGATACCTGCTGACTACGAGGCACGTTTCCTTGAGGCCT TGAAAACGTTTAGGCATCAACGAGTGTTTGACCCCGTAGCGCGGGTCTTG ACTCATGTCCACCCCCTGCCACTTGGCAACGCCCCTATCCCTACTCATCC CCCTGCTTCTGTTCTTGCTGCTGCTGCCTCTACAATGGACTATTTGGGTC CGTGGATGGAGGATGCCTTGGCTGCGGAGATTGCCGACGGCATCATCGAT CCAATCACTCTGGCACCATTTCCTCCCTCCCTTTCTACCACTCACTTTGC TGCTACTTGTGCTGCTTCCACTACAGTTGCTGCTTGTGCTGCCGCTGCAT CAGCTTCAGCTTCGCAGCCGAAGATCTCCGCGTTCCTGACGGCAGCAAGA CACCGGCCGCAGGAGGGCGAGAACAGGGACGGGGAAGAGGAAGAGGAAGG GGAAGCGAATGGTGGTGTCACTACGACTGATTCTTCACGCTTTAGTGGAG CTGTAAGGAGGAATGTCATCTACCGTCCCGGGCTTCGCAAGAGTTTGGCG CCTGTGCCTTTGCATCAAAACAATCGACTCACAAGTTATTTGAACAACAA AGCGGCCGCGACAGTATCAGTAGCTGCAGCGATGAAAAGCAGCAGCAGTA GTGGTAGCTTCAGGACTTTGCCTGCAATGCTTCGGAAGAGGAAGAGTGTA AGCACCAACAGTGGTGGCAGCGGCCGCAGCTCTGGTGCTGAGGGAAGTGC TTCTGTGTCATCGATGCCCCTACCACCAGAACGTCATGAGGACGCACCTG ACAAGGCAACTGGGACAGGAGGAGCCGCAGTAGCATCAACCACTGGCATT TTGTCTCGCTTGCCGCACCTGTCGACCTGGTTTGGAGGGAAAGGCGAAAA CAAGGCGCACACAAAGAAGGAAAATAGATCTAGCGGGGGTTTGCCTTCCT TGTCGTCGCCCTCATCCTTATCACCATCACCATCGTCATTATTATCATCA TTGTCATCATCATCCTTGGTATCGTCATATTGGAAACGGCAACGAACATT AGGCGGTCGGCCCACGGCTTTCACATTGCGGCGTTTTGCCTGTGGTGGTG GTGCCTGTGCTGGTGGTGCCACATCCGCTGCCGAGGAAGAGGAAGAAAGG GAGGAAGTGGAGGAAGGAGGAAGCAGGAGACCAAAAATAAGGTTAAGCGG CAGCAAGGGAGGAGCAGACGGAGGGTATGGCTCTGATTCGTTGCAGCCGC CCACGCCGGGGACGCCATATGGAGAATCAGCAGCAGCAACAGCATCTTCA GCAGAAGGAGCAGCAGTAGCCGCAGCACGTCCGCTTAACCAAGCTGACTT GGACGAGACGGGTGATGATGACGGTGTGAGGGAGATGGCTGTGGTTAACG CAGCATCAGCAGCGGTAGCAGCAAGAACGACTACCATGCATGAGTCTAGT CATGGTATTAGCACGACCTTAATTTCGTTTGAGCCCTTTTTGTATCAAAG TGATGATGATAATGCTTCTGATAATTTGGGATTGAAGAGGGGGCTGGGGA AAAGCTTGGCCACAACGACAGCTTTAAATAAGACTGTCATTGGGCCTACT GCTGCTGTCACCTCCCAGTCCACCGTTAATTTCCGTCGCCGCCGACCTCG AGATAATCAAAAGCAGTCGCCAGCAGCAGCAACAACAGGAGAAAGAGGAG GAGAGGGAGGACGGGTAGAGGAGGGAGACGGGAAAATGTCCCTTTCGCTG GACGCCTTTAAGTTTGATGCGGGTGATGGACCTTTTCTGTCCTCTTTGAT GCCATGA back to top
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