jgi.p|Nanoce1779_2|62382, mRNA_5271 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|62382
Unique NamemRNA_5271
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length872
Alignment locationscaffold_13:35713..36861 -

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Properties
Property NameValue
TranscriptId62468
TrackFilteredModels2
ProteinId62382
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:35713..36861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|62382gene_5271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|62382mRNA_5271-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5271CDS_5271Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5271 ID=mRNA_5271|Name=jgi.p|Nanoce1779_2|62382|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
CGGCGACTCGGAGTCTACCACCGAGTGACTGCGTAGTACCTCCTGCCCAG
GCTTTGCACTCAGCACCCAAGCTGCTTTGCACGACAATGCGATCCAAATT
CGACCCACGCACCACACAACATTAGGATAATTAAGACGACGAGTCGATGA
AGCACCTCATGGCATCGGCAGCCCTGCTGGCTGTCCTCCCCTTTTCTGCT
CAAGCCTTCCGATTGCCCAGATTCCCAGGCGCAACCTCGCCTCCCCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AAGAAAAGAAGCTACAAAAGCCGGGCTCTTACACCAAGACGTCACCTGTG
CTCAAGGCGGCGGTGGGGTTGCTGACAGATGGTTTGAACAACGTGGCACG
GCAAGAAGCCTCCCTCTCCACCCCGGAGAAGGTCGTTACCCGCCTGTCCC
CCACAGCTCTCAAGCAAAAAATCGAAGCCGATTACAAGGCCGCCTATTTC
TTGACGGGTGCCATTAGCCCCGAGGCATATGATGAAGATTGCGTCTTTAT
GGGTACGTTAGTGAGAGAGAGATGGACTGGCTCGGAAAGGAAAGGCTGTA
GGATGAAGGAAGGGAGGGAGAGCCGATCGCAGTAGGAAAGCAGAAACGGC
ACACTTGATTACCAAAGAAGCTCTGCTCGCTTATTGATATGCACCCATAT
CTCAGCTTTACACCGACGTACAAATACACATAAACACACATGCGTCCCCT
TTTCCCTTCAAGACCCCACGCTTTCCTTCACGGGCCTGGCGACTTGGTCT
CGGAACATAAACAACCTCAAGATCTTCTTCCGTGATCCCCGCCTGGACCT
GCAAGGCATCAAGCTGGACACT
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protein sequence of jgi.p|Nanoce1779_2|62382

>mRNA_5271-protein ID=mRNA_5271-protein|Name=jgi.p|Nanoce1779_2|62382|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MKHLMASAALLAVLPFSAQAFRLPRFPGATSPPQQQQQQQQQQQQQQQQQ
QQEKKLQKPGSYTKTSPVLKAAVGLLTDGLNNVARQEASLSTPEKVVTRL
SPTALKQKIEADYKAAYFLTGAISPEAYDEDCVFMGTLVRERWTGSERKG
CRMKEGRESRSQ*
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mRNA from alignment at scaffold_13:35713..36861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5271 ID=mRNA_5271|Name=jgi.p|Nanoce1779_2|62382|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp|location=Sequence derived from alignment at scaffold_13:35713..36861- (Nannochloropsis oceanica)
CGGCGACTCGGAGTCTACCACCGAGTGACTGCGTAGTACCTCCTGCCCAG
GCTTTGCACTCAGCACCCAAGCTGCTTTGCACGACAATGCGATCCAAATT
CGACCCACGCACCACACAACATTAGGATAATTAAGACGACGAGTCGATGA
AGCACCTCATGGCATCGGCAGCCCTGCTGGCTGTCCTCCCCTTTTCTGCT
CAAGCCTTCCGATTGCCCAGATTCCCAGGCGCAACCTCGCCTCCCCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AAGAAAAGAAGCTACAAAAGCCGGGCTCTTACACCAAGACGTCACCTGTG
CTCAAGGCGGCGGTGGGGTTGCTGACAGATGGTTTGAACAACGTGGTACG
TGTGCCGTGTAAGCGAGGGGATGGGAGGCGTAAAGGAGATGCATATACCG
GACGAAATTTTGCAGCGGTAGCTCTTACTTCGTGTCACTGACGCGCACAA
CGATACGTCTTGACATCAACTCGCACCATCGCATTCAGGCACGGCAAGAA
GCCTCCCTCTCCACCCCGGAGAAGGTCGTTACCCGCCTGTCCCCCACAGC
TCTCAAGCAAAAAATCGAAGCCGATTACAAGGCCGCCTATTTCTTGACGG
GTGCCATTAGCCCCGAGGCATATGATGAAGATTGCGTCTTTATGGGTACG
TTAGTGAGAGAGAGATGGACTGGCTCGGAAAGGAAAGGCTGTAGGATGAA
GGAAGGGAGGGAGAGCCGATCGCAGTAGGAAAGCAGAAACGGCACACTTG
ATTACCAAAGAAGCTCTGCTCGCTTATTGATATGCACCCATATCTCAGCT
TTACACCGACGTACAAATACACATAAACACACATGCGTCCCCTTTTCCCT
TCAAGACCCCACGCTTTCCTTCACGGGCCTGGCGACTTGGTCTCGGAACA
TAAACAACCTCAAGATCTTCTTCCGTGATCCCCGCCTGGACCTGCAAGGC
ATCAAGCTGGACACGTACGTATAGACATTAGTTACTGGATTGATTTTAAA
AAAGGGAGTGAAATGGCTGGTGGGAAGGACTCGTCGTCAGCATCTATCTG
ACAGACTCCCTTCCCTCCCTCCTCCTCCCCCCTTACCTCCTTCGCCAGT
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Coding sequence (CDS) from alignment at scaffold_13:35713..36861-

>mRNA_5271 ID=mRNA_5271|Name=jgi.p|Nanoce1779_2|62382|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_13:35713..36861- (Nannochloropsis oceanica)
GCACGGCAAGAAGCCTCCCTCTCCACCCCGGAGAAGGTCGTTACCCGCCT
GTCCCCCACAGCTCTCAAGCAAAAAATCGAAGCCGATTACAAGGCCGCCT
ATTTCTTGACGGGTGCCATTAGCCCCGAGGCATATGATGAAGATTGCGTC
TTTATGGGTACGTTAGTGAGAGAGAGATGGACTGGCTCGGAAAGGAAAGG
CTGTAGGATGAAGGAAGGGAGGGAGAGCCGATCGCAGTAGATGAAGCACC
TCATGGCATCGGCAGCCCTGCTGGCTGTCCTCCCCTTTTCTGCTCAAGCC
TTCCGATTGCCCAGATTCCCAGGCGCAACCTCGCCTCCCCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAA
AGAAGCTACAAAAGCCGGGCTCTTACACCAAGACGTCACCTGTGCTCAAG
GCGGCGGTGGGGTTGCTGACAGATGGTTTGAACAACGTGGCACGGCAAGA
AGCCTCCCTCTCCACCCCGGAGAAGGTCGTTACCCGCCTGTCCCCCACAG
CTCTCAAGCAAAAAATCGAAGCCGATTACAAGGCCGCCTATTTCTTGACG
GGTGCCATTAGCCCCGAGGCATATGATGAAGATTGCGTCTTTATGGGTAC
GTTAGTGAGAGAGAGATGGACTGGCTCGGAAAGGAAAGGCTGTAGGATGA
AGGAAGGGAGGGAGAGCCGATCGCAGTAGATGAAGCACCTCATGGCATCG
GCAGCCCTGCTGGCTGTCCTCCCCTTTTCTGCTCAAGCCTTCCGATTGCC
CAGATTCCCAGGCGCAACCTCGCCTCCCCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAAAGAAGCTACAA
AAGCCGGGCTCTTACACCAAGACGTCACCTGTGCTCAAGGCGGCGGTGGG
GTTGCTGACAGATGGTTTGAACAACGTG
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Synonyms
Publications