jgi.p|Nanoce1779_2|592117, mRNA_5318 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592117
Unique NamemRNA_5318
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1475
Alignment locationscaffold_13:158636..160110 -

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Properties
Property NameValue
TranscriptId592203
TrackFilteredModels2
ProteinId592117
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:158636..160110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592117gene_5318Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592117mRNA_5318-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5318CDS_5318Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5318 ID=mRNA_5318|Name=jgi.p|Nanoce1779_2|592117|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
AACAGCGCCATGAAGGTTTCTACCGCAGCGTGTGCGGCCATGACGTGGTC
GGCCATGAGTAGAACAACCCTGGCATCTTCCATATCGACCATCCGCAGCA
CTGTGGAGCTTGACAACATTCTGACCCCAGGCAACACCTTGCTTGGTCGC
AAAGGCTGATCCGGCCTGTTCGCCCGCTCGGGATGCAGTCGGGTTTTCGG
ACGTGCCCCATGACATTCCAGGTGTACGTCTGCTTCTACTGGATGAAGGC
AGCCCTCCTGAACTAGCCGCGTTCCTGAATCTGACCTCGTGCACCGACGT
GGCTTTTGTGCCCGAAGGTAAATGGACATGGCCCCCCACAGCTTTTTATG
ATGTAAGCTCGCCACAAGACCTGCATATCGAGCATCTGCTGCCCGACAGC
AAGGAGGAATTTAGATCGCTCGCCGCAAGCCTCCTGGGCGTCGATGCTGC
CTTTTGCGACAACCTGCCTATCGCAGTCAAGGTCTTTTGGCTTGACGGTA
ATGACATAGAGATCGAGACCTTACGCCTTGCGGCAGGCCAATGCCATAAT
ACTTGTGGCAGGCCAATGCCATAATATCCGCTCTCTCAAAGGTCACCGCT
TTCTCTTTCGCGGCGAAAAGACGGGCAATGAATTAGGCCGCGTTGTGGTG
GGCCCCAACCTTGTTTTTCGTCCTACCGTACCAGTACCGGAGGAAGAAAA
AGAATACCAGGGTTCATCGTCCCTCCATTCTTTGTACCTATTCTGCGCCT
TTCCTCCCGAGGGATTCCCCGAAGACCTCGCGGAACATGAGTTTCTTGAA
ATAAAAAGGGCTCAATGCGATGAACGTCGGCTTATGCTCAACATTGACCA
GCCTTCCTGGGTCCCTCATTTCACCCCTGTGGGTTTCCTCAAGACGATTG
CCCCCTCCGCATTGTACGCGGAGATCCTCAATTTTTACAAACATAATCTT
AACAAGGAAATACCTGAAGGTCGAAGCTTAAGCGACTGCTACCACGAAAA
CGTTAAGGGAGGAAGGACGACGATGATTCACGTCAGTGATGTGTTACGTG
CTTAGATATTCAAGGTCTATCAGCCCTCTGGAAGAGTGGATTGGAGGAAC
TATTCCTCTAGAACCGACGAGTATGTACGGCATCCGTCGCTACCCTGCCG
GAAGCCGGCTAATGAAACACGGTGACATGATCTCGACACACGCCGTCAGC
GCCATTATAAATGTGGCTCAAGAAGGGATACTTGAGGAATGGCCATTGCA
AATCCACGACCATCAGGGAGTAGAGCATTCGATTGTAATGCAGCCCGGAG
AGGCGGTTTTCTACGAAAGCGTGTCTTGCATTCATGGCCACGAGACGCCG
TTGAAGAATGGGACGTACGCGAATTTGTTTGTGCATTACCGTCCAACGGA
GGGGTGGTACTACAAGTACAAGTACTGAATAAATTGAGAGAAGGAAAGAA
ACACAAGAAAAAAAATCAACACGCG
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protein sequence of jgi.p|Nanoce1779_2|592117

>mRNA_5318-protein ID=mRNA_5318-protein|Name=jgi.p|Nanoce1779_2|592117|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MCYVLRYSRSISPLEEWIGGTIPLEPTSMYGIRRYPAGSRLMKHGDMIST
HAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHG
HETPLKNGTYANLFVHYRPTEGWYYKYKY*
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mRNA from alignment at scaffold_13:158636..160110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5318 ID=mRNA_5318|Name=jgi.p|Nanoce1779_2|592117|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp|location=Sequence derived from alignment at scaffold_13:158636..160110- (Nannochloropsis oceanica)
AACAGCGCCATGAAGGTTTCTACCGCAGCGTGTGCGGCCATGACGTGGTC
GGCCATGAGTAGAACAACCCTGGCATCTTCCATATCGACCATCCGCAGCA
CTGTGGAGCTTGACAACATTCTGACCCCAGGCAACACCTTGCTTGGTCGC
AAAGGCTGATCCGGCCTGTTCGCCCGCTCGGGATGCAGTCGGGTTTTCGG
ACGTGCCCCATGACATTCCAGGTGTACGTCTGCTTCTACTGGATGAAGGC
AGCCCTCCTGAACTAGCCGCGTTCCTGAATCTGACCTCGTGCACCGACGT
GGCTTTTGTGCCCGAAGGTAAATGGACATGGCCCCCCACAGCTTTTTATG
ATGTAAGCTCGCCACAAGACCTGCATATCGAGCATCTGCTGCCCGACAGC
AAGGAGGAATTTAGATCGCTCGCCGCAAGCCTCCTGGGCGTCGATGCTGC
CTTTTGCGACAACCTGCCTATCGCAGTCAAGGTCTTTTGGCTTGACGGTA
ATGACATAGAGATCGAGACCTTACGCCTTGCGGCAGGCCAATGCCATAAT
ACTTGTGGCAGGCCAATGCCATAATATCCGCTCTCTCAAAGGTCACCGCT
TTCTCTTTCGCGGCGAAAAGACGGGCAATGAATTAGGCCGCGTTGTGGTG
GGCCCCAACCTTGTTTTTCGTCCTACCGTACCAGTACCGGAGGAAGAAAA
AGAATACCAGGGTTCATCGTCCCTCCATTCTTTGTACCTATTCTGCGCCT
TTCCTCCCGAGGGATTCCCCGAAGACCTCGCGGAACATGAGTTTCTTGAA
ATAAAAAGGGCTCAATGCGATGAACGTCGGCTTATGCTCAACATTGACCA
GCCTTCCTGGGTCCCTCATTTCACCCCTGTGGGTTTCCTCAAGACGATTG
CCCCCTCCGCATTGTACGCGGAGATCCTCAATTTTTACAAACATAATCTT
AACAAGGAAATACCTGAAGGTCGAAGCTTAAGCGACTGCTACCACGAAAA
CGTTAAGGGAGGAAGGACGACGATGATTCACGTCAGTGATGTGTTACGTG
CTTAGATATTCAAGGTCTATCAGCCCTCTGGAAGAGTGGATTGGAGGAAC
TATTCCTCTAGAACCGACGAGTATGTACGGCATCCGTCGCTACCCTGCCG
GAAGCCGGCTAATGAAACACGGTGACATGATCTCGACACACGCCGTCAGC
GCCATTATAAATGTGGCTCAAGAAGGGATACTTGAGGAATGGCCATTGCA
AATCCACGACCATCAGGGAGTAGAGCATTCGATTGTAATGCAGCCCGGAG
AGGCGGTTTTCTACGAAAGCGTGTCTTGCATTCATGGCCACGAGACGCCG
TTGAAGAATGGGACGTACGCGAATTTGTTTGTGCATTACCGTCCAACGGA
GGGGTGGTACTACAAGTACAAGTACTGAATAAATTGAGAGAAGGAAAGAA
ACACAAGAAAAAAAATCAACACGCG
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Coding sequence (CDS) from alignment at scaffold_13:158636..160110-

>mRNA_5318 ID=mRNA_5318|Name=jgi.p|Nanoce1779_2|592117|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_13:158636..160110- (Nannochloropsis oceanica)
ATGTGTTACGTGCTTAGATATTCAAGGTCTATCAGCCCTCTGGAAGAGTG
GATTGGAGGAACTATTCCTCTAGAACCGACGAGTATGTACGGCATCCGTC
GCTACCCTGCCGGAAGCCGGCTAATGAAACACGGTGACATGATCTCGACA
CACGCCGTCAGCGCCATTATAAATGTGGCTCAAGAAGGGATACTTGAGGA
ATGGCCATTGCAAATCCACGACCATCAGGGAGTAGAGCATTCGATTGTAA
TGCAGCCCGGAGAGGCGGTTTTCTACGAAAGCGTGTCTTGCATTCATGGC
CACGAGACGCCGTTGAAGAATGGGACGTACGCGAATTTGTTTGTGCATTA
CCGTCCAACGGAGGGGTGGTACTACAAGTACAAGTACTGA
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Synonyms
Publications