jgi.p|Nanoce1779_2|593194, mRNA_5935 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593194
Unique Name	mRNA_5935
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1040
Alignment location	scaffold_14:109078..110699 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593280
Track	FilteredModels2
ProteinId	593194

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:109078..110699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593194	gene_5935	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593194	mRNA_5935-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5935	CDS_5935	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:109078..110699+
coding sequence from alignment at scaffold_14:109078..110699+

mRNA sequence

>mRNA_5935 ID=mRNA_5935|Name=jgi.p|Nanoce1779_2|593194|organism=Nannochloropsis oceanica|type=mRNA|length=1040bp
AGGTACACCCAGCCTGCAACACCAGCACAACCGCCACCATCGACAGCCAT
GTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCGTCCCTTTGG
AACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCCAG
GACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACCAA
ACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGCTT
GCTTGCAGCTTGTTAAGGGCGGGGCGACGGTATTCAAGCACCGCTTCTGG
CCCCTTCTGTACCTGTACTGGGCCTACACCGCGTATGGCATCGTCACGGC
TCCCTCCCTCGCCTTCGCCATCGGGGCCTTCATCCTAACGTACATCTACA
TCGATTTGTACGGCGCAGTTCTCCATATCGTGCTGGACAACCCGAATTTC
TTGAAGCTACCCTTGTTGGGCGAGGCCTGCTTGGAGTTTCAGTTCCACCA
CATCATTCCCCACGAAATCACCGTTCGATCCTACATCCATATTGCCGCCG
ACCTCAACGGCATCATTGGATTGCAGTACGGCTGGCACCTGTTTTTGTTC
AAAGGTCTGGGGGACCCGGCGTTTCGCTGTCTGGCGTGCTGTGCAGTGCT
CAACGCCTACCTTGGCCAACTTGCGCACAGGCAGGCCCACATGCTGCCCG
AAAAGAGGGATCCTGTGGTTGATGTTCTCCAGCGCTTGGGCCTTATGGTG
GCGCCGGACACGCACCGCCGCCACCACAAGACGTACGATCAGGGCTTCCC
TATCTTGAGTGGCTGGTGCGATGCGCCCATCACCTTCCTCTTCCAGCACA
TCGTCTCCTCTCAGTGGATCTGGCTTTCGGCCTTCCTCCTTCTTACCTTT
GGGGGTATTGCGGGTGTGGCGAGGTTGTATCTGCCTGTCTTTGCCTGGGC
GATGGAGGGGAAGGGATGGGAAGGAGCGTGGGAGGGAGCGGCCGAATCCT
GGTCGAGGTCGTCGATGCTCTAAGGAGGGCGAGAGGGAGA

protein sequence of jgi.p|Nanoce1779_2|593194

>mRNA_5935-protein ID=mRNA_5935-protein|Name=jgi.p|Nanoce1779_2|593194|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MCVGPTLTQSNTPAVPLEPSTLPPLVATSGLDAQDGGPEIDIVDRLNAQT
KRLAAKSKSEPGDEDYACLQLVKGGATVFKHRFWPLLYLYWAYTAYGIVT
APSLAFAIGAFILTYIYIDLYGAVLHIVLDNPNFLKLPLLGEACLEFQFH
HIIPHEITVRSYIHIAADLNGIIGLQYGWHLFLFKGLGDPAFRCLACCAV
LNAYLGQLAHRQAHMLPEKRDPVVDVLQRLGLMVAPDTHRRHHKTYDQGF
PILSGWCDAPITFLFQHIVSSQWIWLSAFLLLTFGGIAGVARLYLPVFAW
AMEGKGWEGAWEGAAESWSRSSML*

mRNA from alignment at scaffold_14:109078..110699+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5935 ID=mRNA_5935|Name=jgi.p|Nanoce1779_2|593194|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at scaffold_14:109078..110699+ (Nannochloropsis oceanica)
AGGTACACCCAGCCTGCAACACCAGCACAACCGCCACCATCGACAGCCAT
GTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCGTCCCTTTGG
AACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCCAG
GACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACCAA
ACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGCTT
GCTTGCAGCTTGTTAAGGGCGGGGCGACGGTGCGTTTATCGGAGGGAAGG
AGGGCTGGAAGGGAAGGAGGGAGGGCAGTCGATGATAGGTTGCACGTCGG
CGGGGGCGGACTCGTCAGGATTGAGGTCTTGAGCATATATAACCAGAAGA
ATGAAGAATAATTATTTCCGTTAAACTCATATTTTCTTTTCACCTCTAAT
TCAGGTATTCAAGCACCGCTTCTGGCCCCTTCTGTACCTGTACTGGGCCT
ACACCGCGTATGGCATCGTCACGGCTCCCTCCCTCGCCTTCGCCATCGGG
GCCTTCATCCTAACGTACATCTACATCGATTTGTACGGCGCAGTTCTCCA
TATCGTGCTGGACAACCCGAATTTCTTGAAGCTACCCTTGTTGGGCGAGG
CCTGCTTGGAGTTTCAGGTGAGAAACATTCTGCATTTCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCGCCTCTCCATATTTTTTCGCCTTCAA
TCTGTATCACGCGGCCTATCTTGTGTAGAAACCCTCTGTGGCTTCACAAA
CTGACCTCAAACCCTCCCTCCCCAGTTCCACCACATCATTCCCCACGAAA
TCACCGTTCGATCCTACATCCATATTGCCGCCGACCTCAACGGCATCATT
GGATTGCAGTACGGCTGGCACCTGTTTTTGTTCAAAGGTCTGGGGGACCC
GGCGTTTCGCTGTCTGGCGTGCTGTGCAGTGCTCAACGCCTACCTTGGCC
AACTTGCGCACAGGCAGGCCCACATGCTGCCCGAAAAGAGGGATCCTGTG
GTTGATGTTCTCCAGCGCTTGGGCCTTATGGTGGCGCCGGACACGCACCG
CCGCCACCACAAGACGTACGATCAGGGCTTCCCTATCTTGAGTGGTACGT
GCTTGCTTCTTCACTTACCCACTTGTCTGCTTGCCTGCTTGCCTACTTGC
CTACTTGCCTACATGCTTTTCCTCCTTCCCTCTTTTCCCTCTTTCCCTCG
TCCAGGCTGATGCAATGCCCCCATAACCTTCCTCTTCCAACATGCCGTGT
CCTTCCAGTGGGTCTGGCTAAGCCATCATCTTACATTCATCCCTCCTTTC
CTTCTCTGTCTTCTTCCCTCCTTCCCCCACCCATTCCATGCAGGCTGGTG
CGATGCGCCCATCACCTTCCTCTTCCAGCACATCGTCTCCTCTCAGTGGA
TCTGGCTTTCGGCCTTCCTCCTTCTTACCTTTGGGGGTATTGCGGGTGTG
GCGAGGTTGTATCTGCCTGTCTTTGCCTGGGCGATGGAGGGGAAGGGATG
GGAAGGAGCGTGGGAGGGAGCGGCCGAATCCTGGTCGAGGTCGTCGATGC
TCTAAGGAGGGCGAGAGGGAGA

Coding sequence (CDS) from alignment at scaffold_14:109078..110699+

>mRNA_5935 ID=mRNA_5935|Name=jgi.p|Nanoce1779_2|593194|organism=Nannochloropsis oceanica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_14:109078..110699+ (Nannochloropsis oceanica)
ATGTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCGTCCCTTT
GGAACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCC
AGGACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACC
AAACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGC
TTGCTTGCAGCTTGTTAAGGGCGGGGCGACGGTATTCAAGCACCGCTTCT
GGCCCCTTCTGTACCTGTACTGGGCCTACACCGCGTATGGCATCGTCACG
GCTCCCTCCCTCGCCTTCGCCATCGGGGCCTTCATCCTAACGTACATCTA
CATCGATTTGTACGGCGCAGTTCTCCATATCGTGCTGGACAACCCGAATT
TCTTGAAGCTACCCTTGTTGGGCGAGGCCTGCTTGGAGTTTCAGTTCCAC
CACATCATTCCCCACGAAATCACCGTTCGATCCTACATCCATATTGCCGC
CGACCTCAACGGCATCATTGGATTGCAGTACGGCTGGCACCTGTTTTTGT
TCAAAGGTCTGGGGGACCCGGCGTTTCGCTGTCTGGCGTGCTGTGCAGTG
CTCAACGCCTACCTTGGCCAACTTGCGCACAGGCAGGCCCACATGCTGCC
CGAAAAGAGGGATCCTGTGGTTGATGTTCTCCAGCGCTTGGGCCTTATGG
TGGCGCCGGACACGCACCGCCGCCACCACAAGACGTACGATCAGGGCTTC
CCTATCTTGAGTGGCTGGTGCGATGCGCCCATCACCTTCCTCTTCCAGCA
CATCGTCTCCTCTCAGTGGATCTGGCTTTCGGCCTTCCTCCTTCTTACCT
TTGGGGGTATTGCGGGTGTGGCGAGGTTGTATCTGCCTGTCTTTGCCTGG
GCGATGGAGGGGAAGGGATGGGAAGGAGCGTGGGAGGGAGCGGCCGAATC
CTGGTCGAGGTCGTCGATGCTCTAAATGTGCGTGGGACCGACATTGACTC
AGAGCAATACCCCTGCCGTCCCTTTGGAACCGTCGACGCTTCCTCCTTTG
GTTGCTACCTCAGGGCTTGATGCCCAGGACGGCGGCCCGGAGATAGACAT
TGTTGATCGATTGAACGCACAAACCAAACGGTTGGCAGCCAAGAGCAAGA
GCGAGCCGGGCGATGAAGACTATGCTTGCTTGCAGCTTGTTAAGGGCGGG
GCGACGGTATTCAAGCACCGCTTCTGGCCCCTTCTGTACCTGTACTGGGC
CTACACCGCGTATGGCATCGTCACGGCTCCCTCCCTCGCCTTCGCCATCG
GGGCCTTCATCCTAACGTACATCTACATCGATTTGTACGGCGCAGTTCTC
CATATCGTGCTGGACAACCCGAATTTCTTGAAGCTACCCTTGTTGGGCGA
GGCCTGCTTGGAGTTTCAGTTCCACCACATCATTCCCCACGAAATCACCG
TTCGATCCTACATCCATATTGCCGCCGACCTCAACGGCATCATTGGATTG
CAGTACGGCTGGCACCTGTTTTTGTTCAAAGGTCTGGGGGACCCGGCGTT
TCGCTGTCTGGCGTGCTGTGCAGTGCTCAACGCCTACCTTGGCCAACTTG
CGCACAGGCAGGCCCACATGCTGCCCGAAAAGAGGGATCCTGTGGTTGAT
GTTCTCCAGCGCTTGGGCCTTATGGTGGCGCCGGACACGCACCGCCGCCA
CCACAAGACGTACGATCAGGGCTTCCCTATCTTGAGTGGCTGGTGCGATG
CGCCCATCACCTTCCTCTTCCAGCACATCGTCTCCTCTCAGTGGATCTGG
CTTTCGGCCTTCCTCCTTCTTACCTTTGGGGGTATTGCGGGTGTGGCGAG
GTTGTATCTGCCTGTCTTTGCCTGGGCGATGGAGGGGAAGGGATGGGAAG
GAGCGTGGGAGGGAGCGGCCGAATCCTGGTCGAGGTCGTCGATGCTCTAA
ATGTGCGTGGGACCGACATTGACTCAGAGCAATACCCCTGCCGTCCCTTT
GGAACCGTCGACGCTTCCTCCTTTGGTTGCTACCTCAGGGCTTGATGCCC
AGGACGGCGGCCCGGAGATAGACATTGTTGATCGATTGAACGCACAAACC
AAACGGTTGGCAGCCAAGAGCAAGAGCGAGCCGGGCGATGAAGACTATGC
TTGCTTGCAGCTTGTTAAGGGCGGGGCGACGGTATTCAAGCACCGCTTCT
GGCCCCTTCTGTACCTGTACTGGGCCTACACCGCGTATGGCATCGTCACG
GCTCCCTCCCTCGCCTTCGCCATCGGGGCCTTCATCCTAACGTACATCTA
CATCGATTTGTACGGCGCAGTTCTCCATATCGTGCTGGACAACCCGAATT
TCTTGAAGCTACCCTTGTTGGGCGAGGCCTGCTTGGAGTTTCAGTTCCAC
CACATCATTCCCCACGAAATCACCGTTCGATCCTACATCCATATTGCCGC
CGACCTCAACGGCATCATTGGATTGCAGTACGGCTGGCACCTGTTTTTGT
TCAAAGGTCTGGGGGACCCGGCGTTTCGCTGTCTGGCGTGCTGTGCAGTG
CTCAACGCCTACCTTGGCCAACTTGCGCACAGGCAGGCCCACATGCTGCC
CGAAAAGAGGGATCCTGTGGTTGATGTTCTCCAGCGCTTGGGCCTTATGG
TGGCGCCGGACACGCACCGCCGCCACCACAAGACGTACGATCAGGGCTTC
CCTATCTTGAGTGGCTGGTGCGATGCGCCCATCACCTTCCTCTTCCAGCA
CATCGTCTCCTCTCAGTGGATCTGGCTTTCGGCCTTCCTCCTTCTTACCT
TTGGGGGTATTGCGGGTGTGGCGAGGTTGTATCTGCCTGTCTTTGCCTGG
GCGATGGAGGGGAAGGGATGGGAAGGAGCGTGGGAGGGAGCGGCCGAATC
CTGGTCGAGGTCGTCGATGCTCTAAATGTGCGTGGGACCGACATTGACTC
AGAGCAATACCCCTGCCGTCCCTTTGGAACCGTCGACGCTTCCTCCTTTG
GTTGCTACCTCAGGGCTTGATGCCCAGGACGGCGGCCCGGAGATAGACAT
TGTTGATCGATTGAACGCACAAACCAAACGGTTGGCAGCCAAGAGCAAGA
GCGAGCCGGGCGATGAAGACTATGCTTGCTTGCAGCTTGTTAAGGGCGGG
GCGACGGTATTCAAGCACCGCTTCTGGCCCCTTCTGTACCTGTACTGGGC
CTACACCGCGTATGGCATCGTCACGGCTCCCTCCCTCGCCTTCGCCATCG
GGGCCTTCATCCTAACGTACATCTACATCGATTTGTACGGCGCAGTTCTC
CATATCGTGCTGGACAACCCGAATTTCTTGAAGCTACCCTTGTTGGGCGA
GGCCTGCTTGGAGTTTCAGTTCCACCACATCATTCCCCACGAAATCACCG
TTCGATCCTACATCCATATTGCCGCCGACCTCAACGGCATCATTGGATTG
CAGTACGGCTGGCACCTGTTTTTGTTCAAAGGTCTGGGGGACCCGGCGTT
TCGCTGTCTGGCGTGCTGTGCAGTGCTCAACGCCTACCTTGGCCAACTTG
CGCACAGGCAGGCCCACATGCTGCCCGAAAAGAGGGATCCTGTGGTTGAT
GTTCTCCAGCGCTTGGGCCTTATGGTGGCGCCGGACACGCACCGCCGCCA
CCACAAGACGTACGATCAGGGCTTCCCTATCTTGAGTGGCTGGTGCGATG
CGCCCATCACCTTCCTCTTCCAGCACATCGTCTCCTCTCAGTGGATCTGG
CTTTCGGCCTTCCTCCTTCTTACCTTTGGGGGTATTGCGGGTGTGGCGAG
GTTGTATCTGCCTGTCTTTGCCTGGGCGATGGAGGGGAAGGGATGGGAAG
GAGCGTGGGAGGGAGCGGCCGAATCCTGGTCGAGGTCGTCGATGCTCTAA

Synonyms

Publications