jgi.p|Nanoce1779_2|594298, mRNA_6243 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594298
Unique NamemRNA_6243
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length996
Alignment locationscaffold_15:115784..117455 +

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Properties
Property NameValue
TranscriptId594384
TrackFilteredModels2
ProteinId594298
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:115784..117455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594298gene_6243Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594298mRNA_6243-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6243CDS_6243Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6243 ID=mRNA_6243|Name=jgi.p|Nanoce1779_2|594298|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
GATGGCGACTGTGCGATTCTTCTTTCGTGGTGAATTACTTTTTAGAACAT
ATGATTTGATCTTTATTTTTCTCACTCATGCAATATACTTATCCACACAA
ACATCTGCAAATGCTACGCACCTTCCGCCCTCGTCATTTTCTCTTGGTAT
CACAGCCATCGGATTGACCATTGGCATGTGTATACATACTCCTTGCCCAC
TCCCTGTCCCTTTCAGCTTCCATCGATCTCGCCTTCAAACATTTTCTACG
GCCTTATACCTCCATTCCCTTCATGCAATGCGTCGTTATCAACCTCTCCG
ATGCCCCCGTCGCATCCTGTTAACAAGACGCGTCCTTGACTTCCTCCCCT
CCTTCCCCCTTCTTCACTGCCTTCCCTGCCCCGCCCGTCGTTGTTCCCTC
CTTGGGAGCGTACTTATGAATACGTGCCTGCAATTTGTCCGAGCAGACGC
GGGCAGCGCTTGCCTTGTGCATGCATACACACACCTCCTTCCCTGCCAGC
CCGTCAGGACCAGGGGCCGTGGGCATGACCAGGGCGATACCGGGGAACGG
ATCGAAATAAAAATCTGCCCGTGTGGCAGTGACACCGCAGAGGCCAAAGC
CCATCCCACCGGGTTGGAAGCCGGAGACGTCGTCCCAGAGTAGAAGAGGT
TTGCCTTTCGCCGCGTCCACCATCAAGCCGAACTGCATGTTTCCAATCTT
TCCGTCAGCGAGCGCCTTTTGCAGGTAGTGGGCTTCATCCAGGTATCCTT
GTTTCGCCTCCTCGTTCACCACCACCCCCTTGCGGATCTTGAGTGCGAGG
CGCGTGAGGGAGGGAAGAGCTTTTTCCAGCTGTACAGAGCGCTCCGGCTG
TTCAGGGAGGAGGGGTGCGTCCACTTGGATGCGTTTCAGGCCCACGCAAT
TCCCGTAATACATGGGCCCAATCCCTTCCAAGGCCTTTCGGTAATTCACA
ATCACTGCCAACGAGATGAGGTCCGCGTCGGCCCCCCTCCCCCCCT
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protein sequence of jgi.p|Nanoce1779_2|594298

>mRNA_6243-protein ID=mRNA_6243-protein|Name=jgi.p|Nanoce1779_2|594298|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MATVRFFFRGELLFRTYDLIFIFLTHAIYLSTQTSANATHLPPSSFSLGI
TAIGLTIGMCIHTPCPLPVPFSFHRSRLQTFSTALYLHSLHAMRRYQPLR
CPRRILLTRRVLDFLPSFPLLHCLPCPARRCSLLGSVLMNTCLQFVRADA
GSACLVHAYTHLLPCQPVRTRGRGHDQGDTGERIEIKICPCGSDTAEAKA
HPTGLEAGDVVPE*
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mRNA from alignment at scaffold_15:115784..117455+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6243 ID=mRNA_6243|Name=jgi.p|Nanoce1779_2|594298|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at scaffold_15:115784..117455+ (Nannochloropsis oceanica)
GATGGCGACTGTGCGATTCTTCTTTCGTGGTGAATTACTTTTTAGAACAT
ATGATTTGATCTTTATTTTTCTCACTCATGCAATATACTTATCCACACAA
ACATCTGCAAATGCTACGCACCTTCCGCCCTCGTCATTTTCTCTTGGTAT
CACAGCCATCGGATTGACCATTGGCATGTGTATACATACTCCTTGCCCAC
TCCCTGTCCCTTTCAGCTTCCATCGATCTCGCCTTCAAACATTTTCTACG
GCCTTATACCTCCATTCCCTTCATGCAATGCGTCGTTATCAACCTCTCCG
ATGCCCCCGTCGCATCCTGTTAACAAGACGCGTCCTTGACTTCCTCCCCT
CCTTCCCCCTTCTTCACTGCCTTCCCTGCCCCGCCCGTCGTTGTTCCCTC
CTTGGGAGCGTACTTATGAATACGTGCCTGTGTCATAAAATTAACACAAA
AGCATGGCCGCCACGTGTCAGCACCTTGATTATCACGACCCTCCTCGCTC
TCCCTCTCTCCCTCCCTCCCTCCCTCCATCCCTCCTTCCCTCCTTACCTG
CAATTTGTCCGAGCAGACGCGGGCAGCGCTTGCCTTGTGCATGCATACAC
ACACCTCCTTCCCTGCCAGCCCGTCAGGACCAGGGGCCGTGGGCATGACC
AGGGCGATACCGGGGAACGGATCGAAATAAAAATCTGCCCGTGTGGCAGT
GACACCGCAGAGGCCAAAGCCCATCCCACCGGGTTGGAAGCCTTGAGGGG
AAAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGACAAGGAGGA
TAAGAAGGAGGGAGAAAGGGAGGATTGAAAAAAGCGAGGGAGGAAAAATA
AGGGAGGAGGGAAGAAAGGAAGGGAAGGAAGGAGGCGGCGAGGGAGTCAG
GATGTAATGATGTAATGGTGCCCCTACCGGAGACGTCGTCCCAGAGTAGA
AGAGGTTTGCCTTTCGCCGCGTCCACCTGTGAATTACAGCATCATCATAT
GAGACGAACACAAATGAGAGAATGAAATTGCCTTTCGCCGCGTCCACCAG
TGAATTACAGCATAATCATATCGCCACAAAAACAAAAAAAATGAGCTACC
GCGTCGCTTCCTGCCCTCCTTCCCCTGCTCCTCCCTCCCCTTCCTTACCA
TCAAGCCGAACTGCATGTTTCCAATCTTTCCGTCAGCGAGCGCCTTTTGC
AGGTAGTGGGCTTCATCCAGGTATCCTTGTTTCGCCTCCTCGTTCACCAC
CACCCCCTTGCGGATCTTGAGTGCGAGGCGCGTGAGGGAGGGAAGAGCTT
TTTCCAGCTGTACAGAGCGCTCCGGCTGTTCAGGGAGGAGGGGTGCGTCC
ACTTGGATGCGTTTCAGGCCCACGCAATTCCCTGTTAATTTAATCAAATG
AAGAGGTGTTAATTTAATCACAGTAAGAAACGATAGGGAAAATGTACCAA
CTTCGCCGCGCAACCTCCTTCTCTTCCCGTCTCTCCTTCTCTCCTCCTCT
TACTTGATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CCCCCTCCCTTCCTCCCTCCCTCACATACCGTAATACATGGGCCCAATCC
CTTCCAAGGCCTTTCGGTAATTCACAATCACTGCCAACGAGATGAGGTCC
GCGTCGGCCCCCCTCCCCCCCT
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Coding sequence (CDS) from alignment at scaffold_15:115784..117455+

>mRNA_6243 ID=mRNA_6243|Name=jgi.p|Nanoce1779_2|594298|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_15:115784..117455+ (Nannochloropsis oceanica)
ATGGCGACTGTGCGATTCTTCTTTCGTGGTGAATTACTTTTTAGAACATA
TGATTTGATCTTTATTTTTCTCACTCATGCAATATACTTATCCACACAAA
CATCTGCAAATGCTACGCACCTTCCGCCCTCGTCATTTTCTCTTGGTATC
ACAGCCATCGGATTGACCATTGGCATGTGTATACATACTCCTTGCCCACT
CCCTGTCCCTTTCAGCTTCCATCGATCTCGCCTTCAAACATTTTCTACGG
CCTTATACCTCCATTCCCTTCATGCAATGCGTCGTTATCAACCTCTCCGA
TGCCCCCGTCGCATCCTGTTAACAAGACGCGTCCTTGACTTCCTCCCCTC
CTTCCCCCTTCTTCACTGCCTTCCCTGCCCCGCCCGTCGTTGTTCCCTCC
TTGGGAGCGTACTTATGAATACGTGCCTGCAATTTGTCCGAGCAGACGCG
GGCAGCGCTTGCCTTGTGCATGCATACACACACCTCCTTCCCTGCCAGCC
CGTCAGGACCAGGGGCCGTGGGCATGACCAGGGCGATACCGGGGAACGGA
TCGAAATAAAAATCTGCCCGTGTGGCAGTGACACCGCAGAGGCCAAAGCC
CATCCCACCGGGTTGGAAGCCGGAGACGTCGTCCCAGAGTAGATGGCGAC
TGTGCGATTCTTCTTTCGTGGTGAATTACTTTTTAGAACATATGATTTGA
TCTTTATTTTTCTCACTCATGCAATATACTTATCCACACAAACATCTGCA
AATGCTACGCACCTTCCGCCCTCGTCATTTTCTCTTGGTATCACAGCCAT
CGGATTGACCATTGGCATGTGTATACATACTCCTTGCCCACTCCCTGTCC
CTTTCAGCTTCCATCGATCTCGCCTTCAAACATTTTCTACGGCCTTATAC
CTCCATTCCCTTCATGCAATGCGTCGTTATCAACCTCTCCGATGCCCCCG
TCGCATCCTGTTAACAAGACGCGTCCTTGACTTCCTCCCCTCCTTCCCCC
TTCTTCACTGCCTTCCCTGCCCCGCCCGTCGTTGTTCCCTCCTTGGGAGC
GTACTTATGAATACGTGCCTGCAATTTGTCCGAGCAGACGCGGGCAGCGC
TTGCCTTGTGCATGCATACACACACCTCCTTCCCTGCCAGCCCGTCAGGA
CCAGGGGCCGTGGGCATGACCAGGGCGATACCGGGGAACGGATCGAAATA
AAAATCTGCCCGTGTGGCAGTGACACCGCAGAGGCCAAAGCCCATCCCAC
CGGGTTGGAAGCCGGAGACGTCGTCCCAGAGTAGATGGCGACTGTGCGAT
TCTTCTTTCGTGGTGAATTACTTTTTAGAACATATGATTTGATCTTTATT
TTTCTCACTCATGCAATATACTTATCCACACAAACATCTGCAAATGCTAC
GCACCTTCCGCCCTCGTCATTTTCTCTTGGTATCACAGCCATCGGATTGA
CCATTGGCATGTGTATACATACTCCTTGCCCACTCCCTGTCCCTTTCAGC
TTCCATCGATCTCGCCTTCAAACATTTTCTACGGCCTTATACCTCCATTC
CCTTCATGCAATGCGTCGTTATCAACCTCTCCGATGCCCCCGTCGCATCC
TGTTAACAAGACGCGTCCTTGACTTCCTCCCCTCCTTCCCCCTTCTTCAC
TGCCTTCCCTGCCCCGCCCGTCGTTGTTCCCTCCTTGGGAGCGTACTTAT
GAATACGTGCCTGCAATTTGTCCGAGCAGACGCGGGCAGCGCTTGCCTTG
TGCATGCATACACACACCTCCTTCCCTGCCAGCCCGTCAGGACCAGGGGC
CGTGGGCATGACCAGGGCGATACCGGGGAACGGATCGAAATAAAAATCTG
CCCGTGTGGCAGTGACACCGCAGAGGCCAAAGCCCATCCCACCGGGTTGG
AAGCCGGAGACGTCGTCCCAGAGTAG
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Synonyms
Publications