jgi.p|Nanoce1779_2|530361, mRNA_7054 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530361
Unique NamemRNA_7054
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_16:170109..170756 -

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Properties
Property NameValue
TranscriptId530447
TrackFilteredModels2
ProteinId530361
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:170109..170756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530361gene_7054Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7054CDS_7054Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530361mRNA_7054-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Nanoce1779_2|530361|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ATGCGGGGTCGATGGGGAATAAAGCCCGATACAGTCACGTACACTGCGGC
GATCTCGGCGTGTGAGCGAAGCAGCAATTGCAGCGCGGCCTTGTCGTTGC
TGGATTTGATGAAGCAGGATGGCGCCAAGCCAAACCATTGGACGTACTCG
GCTGCGATAAGTGCCTGTGGACACGGGGGTCGGTTGGACGAGGCGTCGCG
CCTATGGGGGGAGATGAGGGCGGGCGGGTTAAAACCGACGTTGGTGGTGT
ACAACACCATGTTGTCTGCGTGCGAGCGCGGACGGGACAAAGGGCGGGCG
TTGGCGCTGTTGGAGGAGATGAGGGGCGAAGGAGTGGAGAGGGATGTGAT
TACTTGGAATACGATCATTAGTGTGTGCAAGGACAGTGGGGATTGGGAGA
GAGCGAAGGAGTGTTTGAGCGAGATGCAGACAGTGGACAAAATTATGCCG
GACACTATTTCTTTCAATGCTGCGATTGCTGCGTGTGCGAAGGGGGGGGC
GGTCGAAGAGGGACGCAAGCTCTTGAGCAGGATGAAGGCACGAGGCGTCG
CCAGAGACACGTGCACGTACAACTCTCTCATGGACGGATATACGCGCGCA
GGTTCTTTCCCGGCTGTATTGTCCACGCTAGATCAGATGCGGAAGGAG
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protein sequence of jgi.p|Nanoce1779_2|530361

>mRNA_7054-protein ID=mRNA_7054-protein|Name=jgi.p|Nanoce1779_2|530361|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MRGRWGIKPDTVTYTAAISACERSSNCSAALSLLDLMKQDGAKPNHWTYS
AAISACGHGGRLDEASRLWGEMRAGGLKPTLVVYNTMLSACERGRDKGRA
LALLEEMRGEGVERDVITWNTIISVCKDSGDWERAKECLSEMQTVDKIMP
DTISFNAAIAACAKGGAVEEGRKLLSRMKARGVARDTCTYNSLMDGYTRA
GSFPAVLSTLDQMRKE
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mRNA from alignment at scaffold_16:170109..170756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Nanoce1779_2|530361|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold_16:170109..170756- (Nannochloropsis oceanica)
ATGCGGGGTCGATGGGGAATAAAGCCCGATACAGTCACGTACACTGCGGC
GATCTCGGCGTGTGAGCGAAGCAGCAATTGCAGCGCGGCCTTGTCGTTGC
TGGATTTGATGAAGCAGGATGGCGCCAAGCCAAACCATTGGACGTACTCG
GCTGCGATAAGTGCCTGTGGACACGGGGGTCGGTTGGACGAGGCGTCGCG
CCTATGGGGGGAGATGAGGGCGGGCGGGTTAAAACCGACGTTGGTGGTGT
ACAACACCATGTTGTCTGCGTGCGAGCGCGGACGGGACAAAGGGCGGGCG
TTGGCGCTGTTGGAGGAGATGAGGGGCGAAGGAGTGGAGAGGGATGTGAT
TACTTGGAATACGATCATTAGTGTGTGCAAGGACAGTGGGGATTGGGAGA
GAGCGAAGGAGTGTTTGAGCGAGATGCAGACAGTGGACAAAATTATGCCG
GACACTATTTCTTTCAATGCTGCGATTGCTGCGTGTGCGAAGGGGGGGGC
GGTCGAAGAGGGACGCAAGCTCTTGAGCAGGATGAAGGCACGAGGCGTCG
CCAGAGACACGTGCACGTACAACTCTCTCATGGACGGATATACGCGCGCA
GGTTCTTTCCCGGCTGTATTGTCCACGCTAGATCAGATGCGGAAGGAG
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Coding sequence (CDS) from alignment at scaffold_16:170109..170756-

>mRNA_7054 ID=mRNA_7054|Name=jgi.p|Nanoce1779_2|530361|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_16:170109..170756- (Nannochloropsis oceanica)
ATGCGGGGTCGATGGGGAATAAAGCCCGATACAGTCACGTACACTGCGGC
GATCTCGGCGTGTGAGCGAAGCAGCAATTGCAGCGCGGCCTTGTCGTTGC
TGGATTTGATGAAGCAGGATGGCGCCAAGCCAAACCATTGGACGTACTCG
GCTGCGATAAGTGCCTGTGGACACGGGGGTCGGTTGGACGAGGCGTCGCG
CCTATGGGGGGAGATGAGGGCGGGCGGGTTAAAACCGACGTTGGTGGTGT
ACAACACCATGTTGTCTGCGTGCGAGCGCGGACGGGACAAAGGGCGGGCG
TTGGCGCTGTTGGAGGAGATGAGGGGCGAAGGAGTGGAGAGGGATGTGAT
TACTTGGAATACGATCATTAGTGTGTGCAAGGACAGTGGGGATTGGGAGA
GAGCGAAGGAGTGTTTGAGCGAGATGCAGACAGTGGACAAAATTATGCCG
GACACTATTTCTTTCAATGCTGCGATTGCTGCGTGTGCGAAGGGGGGGGC
GGTCGAAGAGGGACGCAAGCTCTTGAGCAGGATGAAGGCACGAGGCGTCG
CCAGAGACACGTGCACGTACAACTCTCTCATGGACGGATATACGCGCGCA
GGTTCTTTCCCGGCTGTATTGTCCACGCTAGATCAGATGCGGAAGGAG
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Synonyms
Publications