jgi.p|Nanoce1779_2|595827, mRNA_7161 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595827
Unique NamemRNA_7161
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length421
Alignment locationscaffold_16:426659..427231 +

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Properties
Property NameValue
TranscriptId595913
TrackFilteredModels2
ProteinId595827
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:426659..427231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595827gene_7161Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595827mRNA_7161-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7161CDS_7161Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7161 ID=mRNA_7161|Name=jgi.p|Nanoce1779_2|595827|organism=Nannochloropsis oceanica|type=mRNA|length=421bp
ACGACAGATCACCTCTCTCTCCTTTGCATCAACAATCTAATATGGGTGGA
GGCAACGGTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGCCAAGGCCAA
GGGCCCCGAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGATGATGAGCC
AGATGTGCATGATTTGCCGAGCCACTTTCATGTGCACGGCAAAGCGACCC
GAACTGGAGGCACACGCCTCGACCAAGCACCCCAAGGACACCCTTGCCAA
GTGCTTTCCTACTCTGGACGCGTAAATGCTCAATGGAATGAAGGGAAGAG
GGAGGGAGGGAGGGGTATAGATAGGGGAGGGAAGGAGGGAGGGAGAGTTG
GCGGAGATGGTGGCATACATCCGTTCGCGTGTGTGAGAGGGAGTCGCGCG
TGTAAGAAAGGCACGAAGGAG
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protein sequence of jgi.p|Nanoce1779_2|595827

>mRNA_7161-protein ID=mRNA_7161-protein|Name=jgi.p|Nanoce1779_2|595827|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MGGGNGAKSASKRERNAKAKGPEAKSILKEKAKMMSQMCMICRATFMCTA
KRPELEAHASTKHPKDTLAKCFPTLDA*
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mRNA from alignment at scaffold_16:426659..427231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7161 ID=mRNA_7161|Name=jgi.p|Nanoce1779_2|595827|organism=Nannochloropsis oceanica|type=mRNA|length=573bp|location=Sequence derived from alignment at scaffold_16:426659..427231+ (Nannochloropsis oceanica)
ACGACAGATCACCTCTCTCTCCTTTGCATCAACAATCTAATATGGGTGGA
GGCAACGGTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGCCAAGGCCAA
GGGCCCCGAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGATGATGAGCC
AGATGTGCATGATTTGCCGAGTAAGTAATGCCTTGAGAAGGAATTGGAGA
GGGGGTATCGGGAGGAATAGGGTCTAAGAGAACTTTTGTGTTAGGTGAAT
ATAATTTTGTGAGGTTTCTTTCTTCCTCTTAACTTTCCTCCTTCCCTCAT
CAATCTACCCACCCACACATAGGCCACTTTCATGTGCACGGCAAAGCGAC
CCGAACTGGAGGCACACGCCTCGACCAAGCACCCCAAGGACACCCTTGCC
AAGTGCTTTCCTACTCTGGACGCGTAAATGCTCAATGGAATGAAGGGAAG
AGGGAGGGAGGGAGGGGTATAGATAGGGGAGGGAAGGAGGGAGGGAGAGT
TGGCGGAGATGGTGGCATACATCCGTTCGCGTGTGTGAGAGGGAGTCGCG
CGTGTAAGAAAGGCACGAAGGAG
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Coding sequence (CDS) from alignment at scaffold_16:426659..427231+

>mRNA_7161 ID=mRNA_7161|Name=jgi.p|Nanoce1779_2|595827|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_16:426659..427231+ (Nannochloropsis oceanica)
ATGGGTGGAGGCAACGGTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGC
CAAGGCCAAGGGCCCCGAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGA
TGATGAGCCAGATGTGCATGATTTGCCGAGCCACTTTCATGTGCACGGCA
AAGCGACCCGAACTGGAGGCACACGCCTCGACCAAGCACCCCAAGGACAC
CCTTGCCAAGTGCTTTCCTACTCTGGACGCGTAAATGGGTGGAGGCAACG
GTGCGAAGTCAGCTTCGAAGCGCGAACGAAACGCCAAGGCCAAGGGCCCC
GAGGCGAAGTCTATCCTGAAGGAGAAGGCAAAGATGATGAGCCAGATGTG
CATGATTTGCCGAGCCACTTTCATGTGCACGGCAAAGCGACCCGAACTGG
AGGCACACGCCTCGACCAAGCACCCCAAGGACACCCTTGCCAAGTGCTTT
CCTACTCTGGACGCGTAA
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Synonyms
Publications