jgi.p|Nanoce1779_2|631724, mRNA_7216 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631724
Unique Name	mRNA_7216
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	696
Alignment location	scaffold_16:593035..594683 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631810
Track	FilteredModels2
ProteinId	631724

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:593035..594683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631724	gene_7216	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631724	mRNA_7216-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7216	CDS_7216	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:593035..594683+
coding sequence from alignment at scaffold_16:593035..594683+

mRNA sequence

>mRNA_7216 ID=mRNA_7216|Name=jgi.p|Nanoce1779_2|631724|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
GTTTCCTCTTCCAGATGGACCACCTCGGGAAAGCTCCTCATGAAATAGTG
TGGGACGAGGCTGAGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGACGAGCGGCCGTTGAAGATTGACATGCACTCGGATGCTATCGTGGCTC
TCGCGGCGACTGACCCTCGTCGAATTCCTCCCCTGCCGGCCCCACTGGTG
GCGGGCGTGGGACAGGAGTCTTGCGTGTGGTTTAATGCCTTCGCCGGCAG
GGTTTACAGGGATGCCTGCGCCTCCTCTCTTTTTCACGCCTGGATGATCC
GCAGCTTCGAGGATGTGATGAATAAGGGCCCTCGTCCCGGCTTTGTGGAC
GCTATTGCCATTTCCAACCTCCGCTTTGGACCTGGCGTCATGCCGCCCAT
GCTCAAGAACGCCCGCTGGGTCCCTACCTCTGCTGCCGGTGAGGGGGAGG
AGGCCGCTCACTCCATAGTCATGATAGCCGACATGACTTACCCCGGGGGC
TTCGGCTTCAAGGTTTCTTCGACGCTCTTCCTCAACTGGCCCATGGCCGG
AACTGCCCGCCTGCCCGTGGCCGTCGATGTGGAGGTGGTGGAGCTCACAG
GGCCGGTGCGCATCGGTGTGACGAAGCAACACTGCTACTGCTCATTCCTC
ACCGAACCGCACGTCCGATTCAAGGTCCTCACCCTGGTCGGGGAAT

protein sequence of jgi.p|Nanoce1779_2|631724

>mRNA_7216-protein ID=mRNA_7216-protein|Name=jgi.p|Nanoce1779_2|631724|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MDHLGKAPHEIVWDEAEDGREGGREGGREDERPLKIDMHSDAIVALAATD
PRRIPPLPAPLVAGVGQESCVWFNAFAGRVYRDACASSLFHAWMIRSFED
VMNKGPRPGFVDAIAISNLRFGPGVMPPMLKNARWVPTSAAGEGEEAAHS
IVMIADMTYPGGFGFKVSSTLFLNWPMAGTARLPVAVDVEVVELTGPVRI
GVTKQHCYCSFLTEPHVRFKVLTLVGE

mRNA from alignment at scaffold_16:593035..594683+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7216 ID=mRNA_7216|Name=jgi.p|Nanoce1779_2|631724|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at scaffold_16:593035..594683+ (Nannochloropsis oceanica)
GTTTCCTCTTCCAGATGGACCACCTCGGGAAAGCTCCTCATGAAATAGTG
TGGGACGAGGCTGAGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGACGAGCGGCCGTTGAAGATTGACATGCACTCGGATGCTATCGTGGCTC
TCGCGGCGACTGACCCTCGTCGAATTCCTCCCCTGCCGGCCCCACTGGTA
ACTCCCTCCCTCCCTCCCTTCCTCCCTCCAACCGAGACGCGTACCGACCC
ACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTCAGGTGGCGGG
CGTGGGACAGGAGTCTTGCGTGTGGTTTAATGCCTTCGCCGGCAGGGTTT
ACAGGGATGCCTGCGCCTCCTCTCTTTTTCACGCCTGGATGATCCGCAGC
TTCGAGGATGTGATGAATAAGGTACCCAATAATAGTAAAACTCCCTCCCT
CCCTCCCTCCCTCCCTCTTCCATCCCTCCCACCATAAGCATATTCACTCC
ATCCCCCCACCCCCCCACCCACCCTCTCTCTCCCCCTCCCTCCCTCCCTC
CTCCAGGGCCCTCGTCCCGGCTTTGTGGACGCTATTGCCATTTCCAACCT
CCGCTTTGGACCTGGCGTCATGCCGCCCATGCTCAAGAACGCCCGCTGGG
TATGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAAC
CTCTATTCGGTTCTTACCCTCTTCCTTTGGCTTCTCTCTTTTGAATACAA
CTCCTTCTCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCAGGTCCCTACC
TCTGCTGCCGGTGAGGGGGAGGAGGCCGCTCACTCCATAGTCATGATAGC
CGACATGACTTACCCCGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TCTCCTTCCCTCCCTCCCTCCCTCCATTCCTCCCTCCCTTTCTCCCTCCC
CTCCTTCCTTCCTTCCTCTCTTTTCACCTTCTTCACCCTTCCCTCCCTCA
CTCCCTCCCTCCCGCAGGGGGGCTTCGGCTTCAAGGTTTCTTCGACGCTC
TTCCTCAACTGGCCCATGGCCGGAACTGCCCGCCTGCCCGTGGCCGTCGA
TGTGGAGGTGGTGGAGCTCACAGGGCCGGTGAGTGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGGGGGAGGAAGGGCACGTGGGAGGGAGGGAGAAAGGGG
TGGGAGGAAGGGAAAAAGGGAGGGAGGGAGGGAGGGAGGGATATGTCTTC
ATTGAACATTAACCAGAGGGAGGGAGGGTGAGGATATGATACATGTGTGA
TACGATATTCATCGGACATCAACCACCTCAGGTGCGCATCGGTGTGACGA
AGCAACACTGCTACTGCTCATTCCTCACCGAACCGCACGTCCGATTCAAG
GTAGGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACATGCCCC
TCCCTCCCACGTGTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCATTCCC
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTCCCTCTCTTCCTCCC
CCAGTTCTCATCATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTGCCTCAGGTCCTCACCCTGGTCGGGGAAT

Coding sequence (CDS) from alignment at scaffold_16:593035..594683+

>mRNA_7216 ID=mRNA_7216|Name=jgi.p|Nanoce1779_2|631724|organism=Nannochloropsis oceanica|type=CDS|length=4767bp|location=Sequence derived from alignment at scaffold_16:593035..594683+ (Nannochloropsis oceanica)
ATGGACCACCTCGGGAAAGCTCCTCATGAAATAGTGTGGGACGAGGCTGA
GGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGAGCGGCCGT
TGAAGATTGACATGCACTCGGATGCTATCGTGGCTCTCGCGGCGACTGAC
CCTCGTCGAATTCCTCCCCTGCCGGCCCCACTGGTGGCGGGCGTGGGACA
GGAGTCTTGCGTGTGGTTTAATGCCTTCGCCGGCAGGGTTTACAGGGATG
CCTGCGCCTCCTCTCTTTTTCACGCCTGGATGATCCGCAGCTTCGAGGAT
GTGATGAATAAGGGCCCTCGTCCCGGCTTTGTGGACGCTATTGCCATTTC
CAACCTCCGCTTTGGACCTGGCGTCATGCCGCCCATGCTCAAGAACGCCC
GCTGGGTCCCTACCTCTGCTGCCGGTGAGGGGGAGGAGGCCGCTCACTCC
ATAGTCATGATAGCCGACATGACTTACCCCGGGGGCTTCGGCTTCAAGGT
TTCTTCGACGCTCTTCCTCAACTGGCCCATGGCCGGAACTGCCCGCCTGC
CCGTGGCCGTCGATGTGGAGGTGGTGGAGCTCACAGGGCCGGTGCGCATC
GGTGTGACGAAGCAACACTGCTACTGCTCATTCCTCACCGAACCGCACGT
CCGATTCAAGGTCCTCACCCTGGTCGGGGAAATGGACCACCTCGGGAAAG
CTCCTCATGAAATAGTGTGGGACGAGGCTGAGGACGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGACGAGCGGCCGTTGAAGATTGACATGCACTC
GGATGCTATCGTGGCTCTCGCGGCGACTGACCCTCGTCGAATTCCTCCCC
TGCCGGCCCCACTGGTGGCGGGCGTGGGACAGGAGTCTTGCGTGTGGTTT
AATGCCTTCGCCGGCAGGGTTTACAGGGATGCCTGCGCCTCCTCTCTTTT
TCACGCCTGGATGATCCGCAGCTTCGAGGATGTGATGAATAAGGGCCCTC
GTCCCGGCTTTGTGGACGCTATTGCCATTTCCAACCTCCGCTTTGGACCT
GGCGTCATGCCGCCCATGCTCAAGAACGCCCGCTGGGTCCCTACCTCTGC
TGCCGGTGAGGGGGAGGAGGCCGCTCACTCCATAGTCATGATAGCCGACA
TGACTTACCCCGGGGGCTTCGGCTTCAAGGTTTCTTCGACGCTCTTCCTC
AACTGGCCCATGGCCGGAACTGCCCGCCTGCCCGTGGCCGTCGATGTGGA
GGTGGTGGAGCTCACAGGGCCGGTGCGCATCGGTGTGACGAAGCAACACT
GCTACTGCTCATTCCTCACCGAACCGCACGTCCGATTCAAGGTCCTCACC
CTGGTCGGGGAAATGGACCACCTCGGGAAAGCTCCTCATGAAATAGTGTG
GGACGAGGCTGAGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
ACGAGCGGCCGTTGAAGATTGACATGCACTCGGATGCTATCGTGGCTCTC
GCGGCGACTGACCCTCGTCGAATTCCTCCCCTGCCGGCCCCACTGGTGGC
GGGCGTGGGACAGGAGTCTTGCGTGTGGTTTAATGCCTTCGCCGGCAGGG
TTTACAGGGATGCCTGCGCCTCCTCTCTTTTTCACGCCTGGATGATCCGC
AGCTTCGAGGATGTGATGAATAAGGGCCCTCGTCCCGGCTTTGTGGACGC
TATTGCCATTTCCAACCTCCGCTTTGGACCTGGCGTCATGCCGCCCATGC
TCAAGAACGCCCGCTGGGTCCCTACCTCTGCTGCCGGTGAGGGGGAGGAG
GCCGCTCACTCCATAGTCATGATAGCCGACATGACTTACCCCGGGGGCTT
CGGCTTCAAGGTTTCTTCGACGCTCTTCCTCAACTGGCCCATGGCCGGAA
CTGCCCGCCTGCCCGTGGCCGTCGATGTGGAGGTGGTGGAGCTCACAGGG
CCGGTGCGCATCGGTGTGACGAAGCAACACTGCTACTGCTCATTCCTCAC
CGAACCGCACGTCCGATTCAAGGTCCTCACCCTGGTCGGGGAAATGGACC
ACCTCGGGAAAGCTCCTCATGAAATAGTGTGGGACGAGGCTGAGGACGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGAGCGGCCGTTGAAGAT
TGACATGCACTCGGATGCTATCGTGGCTCTCGCGGCGACTGACCCTCGTC
GAATTCCTCCCCTGCCGGCCCCACTGGTGGCGGGCGTGGGACAGGAGTCT
TGCGTGTGGTTTAATGCCTTCGCCGGCAGGGTTTACAGGGATGCCTGCGC
CTCCTCTCTTTTTCACGCCTGGATGATCCGCAGCTTCGAGGATGTGATGA
ATAAGGGCCCTCGTCCCGGCTTTGTGGACGCTATTGCCATTTCCAACCTC
CGCTTTGGACCTGGCGTCATGCCGCCCATGCTCAAGAACGCCCGCTGGGT
CCCTACCTCTGCTGCCGGTGAGGGGGAGGAGGCCGCTCACTCCATAGTCA
TGATAGCCGACATGACTTACCCCGGGGGCTTCGGCTTCAAGGTTTCTTCG
ACGCTCTTCCTCAACTGGCCCATGGCCGGAACTGCCCGCCTGCCCGTGGC
CGTCGATGTGGAGGTGGTGGAGCTCACAGGGCCGGTGCGCATCGGTGTGA
CGAAGCAACACTGCTACTGCTCATTCCTCACCGAACCGCACGTCCGATTC
AAGGTCCTCACCCTGGTCGGGGAAATGGACCACCTCGGGAAAGCTCCTCA
TGAAATAGTGTGGGACGAGGCTGAGGACGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGACGAGCGGCCGTTGAAGATTGACATGCACTCGGATGCT
ATCGTGGCTCTCGCGGCGACTGACCCTCGTCGAATTCCTCCCCTGCCGGC
CCCACTGGTGGCGGGCGTGGGACAGGAGTCTTGCGTGTGGTTTAATGCCT
TCGCCGGCAGGGTTTACAGGGATGCCTGCGCCTCCTCTCTTTTTCACGCC
TGGATGATCCGCAGCTTCGAGGATGTGATGAATAAGGGCCCTCGTCCCGG
CTTTGTGGACGCTATTGCCATTTCCAACCTCCGCTTTGGACCTGGCGTCA
TGCCGCCCATGCTCAAGAACGCCCGCTGGGTCCCTACCTCTGCTGCCGGT
GAGGGGGAGGAGGCCGCTCACTCCATAGTCATGATAGCCGACATGACTTA
CCCCGGGGGCTTCGGCTTCAAGGTTTCTTCGACGCTCTTCCTCAACTGGC
CCATGGCCGGAACTGCCCGCCTGCCCGTGGCCGTCGATGTGGAGGTGGTG
GAGCTCACAGGGCCGGTGCGCATCGGTGTGACGAAGCAACACTGCTACTG
CTCATTCCTCACCGAACCGCACGTCCGATTCAAGGTCCTCACCCTGGTCG
GGGAAATGGACCACCTCGGGAAAGCTCCTCATGAAATAGTGTGGGACGAG
GCTGAGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGAGCG
GCCGTTGAAGATTGACATGCACTCGGATGCTATCGTGGCTCTCGCGGCGA
CTGACCCTCGTCGAATTCCTCCCCTGCCGGCCCCACTGGTGGCGGGCGTG
GGACAGGAGTCTTGCGTGTGGTTTAATGCCTTCGCCGGCAGGGTTTACAG
GGATGCCTGCGCCTCCTCTCTTTTTCACGCCTGGATGATCCGCAGCTTCG
AGGATGTGATGAATAAGGGCCCTCGTCCCGGCTTTGTGGACGCTATTGCC
ATTTCCAACCTCCGCTTTGGACCTGGCGTCATGCCGCCCATGCTCAAGAA
CGCCCGCTGGGTCCCTACCTCTGCTGCCGGTGAGGGGGAGGAGGCCGCTC
ACTCCATAGTCATGATAGCCGACATGACTTACCCCGGGGGCTTCGGCTTC
AAGGTTTCTTCGACGCTCTTCCTCAACTGGCCCATGGCCGGAACTGCCCG
CCTGCCCGTGGCCGTCGATGTGGAGGTGGTGGAGCTCACAGGGCCGGTGC
GCATCGGTGTGACGAAGCAACACTGCTACTGCTCATTCCTCACCGAACCG
CACGTCCGATTCAAGGTCCTCACCCTGGTCGGGGAAATGGACCACCTCGG
GAAAGCTCCTCATGAAATAGTGTGGGACGAGGCTGAGGACGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGACGAGCGGCCGTTGAAGATTGACATG
CACTCGGATGCTATCGTGGCTCTCGCGGCGACTGACCCTCGTCGAATTCC
TCCCCTGCCGGCCCCACTGGTGGCGGGCGTGGGACAGGAGTCTTGCGTGT
GGTTTAATGCCTTCGCCGGCAGGGTTTACAGGGATGCCTGCGCCTCCTCT
CTTTTTCACGCCTGGATGATCCGCAGCTTCGAGGATGTGATGAATAAGGG
CCCTCGTCCCGGCTTTGTGGACGCTATTGCCATTTCCAACCTCCGCTTTG
GACCTGGCGTCATGCCGCCCATGCTCAAGAACGCCCGCTGGGTCCCTACC
TCTGCTGCCGGTGAGGGGGAGGAGGCCGCTCACTCCATAGTCATGATAGC
CGACATGACTTACCCCGGGGGCTTCGGCTTCAAGGTTTCTTCGACGCTCT
TCCTCAACTGGCCCATGGCCGGAACTGCCCGCCTGCCCGTGGCCGTCGAT
GTGGAGGTGGTGGAGCTCACAGGGCCGGTGCGCATCGGTGTGACGAAGCA
ACACTGCTACTGCTCATTCCTCACCGAACCGCACGTCCGATTCAAGGTCC
TCACCCTGGTCGGGGAA

Synonyms

Publications