jgi.p|Nanoce1779_2|597766, mRNA_6703 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597766
Unique Name	mRNA_6703
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1949
Alignment location	scaffold_18:482627..484575 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597852
Track	FilteredModels2
ProteinId	597766

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:482627..484575 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597766	gene_6703	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597766	mRNA_6703-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6703	CDS_6703	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:482627..484575-
coding sequence from alignment at scaffold_18:482627..484575-

mRNA sequence

>mRNA_6703 ID=mRNA_6703|Name=jgi.p|Nanoce1779_2|597766|organism=Nannochloropsis oceanica|type=mRNA|length=1949bp
ACAGGCAAGCCTGCCACTGCCACAATGGCGATGCTGATGCCACGGAGGGG
CTTGATGTGCTTGCGACATCTAGCTCGTAAACCTCCTGCCTCCTCAGCCA
AGCCCCATTTAACTCTCCCAAAACGACCCCCAAATTGCATCTCTACTACC
TTCGCCACGAAACCACTCCGCGCTTACACAACCCATGGCAGAAGGCCTCC
ACCCCGCCGCAGCAGTGGAGGCGAAGGTATATCCCCAGAGCAACTCCAAG
CAATTTTGAGAATAGCTGGCCGATTGCTAGGGAGCCTGGCCCACACGATT
CGGGCGCGCGGCTTGCACAAATCCAAACCCATGTTGGTGGCGGGGCTCTT
GCTTGTTCCTACTGGCTTGGGTGGTGCTTTTTTCGTGTCGCATCTCGAAT
CTGCCCCGCTGACGGGACGAACGCAGCTCGTCTTCCTCAATACGACGCAA
GAGATGGAGTTGGGAGTCATGGCGGCTTCGCTGGTGTACAAGGCAGAGAA
AGAGCACATTCTGCCACGCTCTGCACCCGAGACGATTATTGTCCACGACA
TTTCTGCGGGGCTTCTGAAAAGCCTAAAACAGCAAATACAAGGACAAGGA
GAGGACGCCGCTCGCCTCCGTGACCGCATTACCGACATGCAGTGGGAAGT
GAGCGTCATTGATAGTGATGTGGTCAATGCCTTTGTTGTGCCCTCGGGCA
GCATCTTTGTCTACACAGGCCTCCTTAAACAAGTACAGACCACTGGCGCT
TTGGCTTTCATCCTTGGCCACGAGATCAGTCACGCGCTTGCCAGGCATTC
CGTCGAAAAGATGGGCATTTTATGTGTAGGCTCGTTCTTCGTCGATTTCT
GCGCGGGGTTCTTGGGTTCGTCTGCCCATCGTTATTTGCAATACATGTTG
CTGCCTTACCTACAAGCGTTGATTTTGGACTTGCCCTTTTCTAGAAGACT
GGAGACAGAGGCGGATGTATTGGGCGTGCAGCTGATGGCGAACGCGGGAT
ATGATCCACAGGAAGCTATAGAGGCTTGGAAGCGGATGGAACAAGGAGAG
GAGCATGGTGGCGGTGGGAGAAAGGCGATGGAGTTCGTTTCCACTCATCC
CTCGCACCACACAAGGATAGAGCGTTTGACGGCCTTGCTACCAAAAGCAC
GCGCGATGCAACAACAAGCAGTGCGAGTCAAGCTGCAACGAGGAGAAAAA
GTGCCGGATAGCAAGCAGTCAATTTCCCCCTCATCCTCCATGCGCCACGG
GAGGACGTCTAAGGAGGTAGAAGCCATCCGTCAACGACGACGTGAGGAGT
CGGCTCAGACTGCTTTGCGAGCCTCCTCTCTTATTCCACCACCGCCGCCA
CAGTAAAGAGAGAGAATTTGCTGAAGAATATATTGAACGGAGACTCATGC
GCAGACTGTCTGAGTTTAGGGAAGGTTTTATGGTACAGTGCTTTACCGCC
GCAACTAAACACGGCAGGCTTTGAGACCGGACTTCAAAATCTCGGCATTC
GCCGCTTTCAAGCTCGCACCACCCTCCATGGTATTCCGTTGCACTACCTG
GCATGTCGGCGCCACCGTGTTCATTATCCCTCACTCTTACATGCCTGGCA
CCGCCTCCACCTCCCAAGCCCGGTTCACAACACACGGACATGGGCCAGCA
ATCGTGAGGCAGGGGTGAAGCTCTCTCGCCACACGCGTCGCTTTCTTTTC
ACGTGACATTACTTGGAGCCACACTCAAAGACAAAACGCAGGGACTGTGG
CACACAAACACAGAAATGAGAATATCCATGCTCACGCTGTTTGGTCAATA
CTGGATGTCACCTCAATCCCGCCCATCGACTGCATCCCTGCAGGGATCTC
TGCCGCCTCTCGTCGGCCTTGCATTTCTTCTCCAGACAGGCTGTGAGTCG
CTATCCGTGTACGGGTGGCATTCCCTCTGGGGCGCAGCATGGGGTGCGT

protein sequence of jgi.p|Nanoce1779_2|597766

>mRNA_6703-protein ID=mRNA_6703-protein|Name=jgi.p|Nanoce1779_2|597766|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MAMLMPRRGLMCLRHLARKPPASSAKPHLTLPKRPPNCISTTFATKPLRA
YTTHGRRPPPRRSSGGEGISPEQLQAILRIAGRLLGSLAHTIRARGLHKS
KPMLVAGLLLVPTGLGGAFFVSHLESAPLTGRTQLVFLNTTQEMELGVMA
ASLVYKAEKEHILPRSAPETIIVHDISAGLLKSLKQQIQGQGEDAARLRD
RITDMQWEVSVIDSDVVNAFVVPSGSIFVYTGLLKQVQTTGALAFILGHE
ISHALARHSVEKMGILCVGSFFVDFCAGFLGSSAHRYLQYMLLPYLQALI
LDLPFSRRLETEADVLGVQLMANAGYDPQEAIEAWKRMEQGEEHGGGGRK
AMEFVSTHPSHHTRIERLTALLPKARAMQQQAVRVKLQRGEKVPDSKQSI
SPSSSMRHGRTSKEVEAIRQRRREESAQTALRASSLIPPPPPQ*

mRNA from alignment at scaffold_18:482627..484575-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6703 ID=mRNA_6703|Name=jgi.p|Nanoce1779_2|597766|organism=Nannochloropsis oceanica|type=mRNA|length=1949bp|location=Sequence derived from alignment at scaffold_18:482627..484575- (Nannochloropsis oceanica)
ACAGGCAAGCCTGCCACTGCCACAATGGCGATGCTGATGCCACGGAGGGG
CTTGATGTGCTTGCGACATCTAGCTCGTAAACCTCCTGCCTCCTCAGCCA
AGCCCCATTTAACTCTCCCAAAACGACCCCCAAATTGCATCTCTACTACC
TTCGCCACGAAACCACTCCGCGCTTACACAACCCATGGCAGAAGGCCTCC
ACCCCGCCGCAGCAGTGGAGGCGAAGGTATATCCCCAGAGCAACTCCAAG
CAATTTTGAGAATAGCTGGCCGATTGCTAGGGAGCCTGGCCCACACGATT
CGGGCGCGCGGCTTGCACAAATCCAAACCCATGTTGGTGGCGGGGCTCTT
GCTTGTTCCTACTGGCTTGGGTGGTGCTTTTTTCGTGTCGCATCTCGAAT
CTGCCCCGCTGACGGGACGAACGCAGCTCGTCTTCCTCAATACGACGCAA
GAGATGGAGTTGGGAGTCATGGCGGCTTCGCTGGTGTACAAGGCAGAGAA
AGAGCACATTCTGCCACGCTCTGCACCCGAGACGATTATTGTCCACGACA
TTTCTGCGGGGCTTCTGAAAAGCCTAAAACAGCAAATACAAGGACAAGGA
GAGGACGCCGCTCGCCTCCGTGACCGCATTACCGACATGCAGTGGGAAGT
GAGCGTCATTGATAGTGATGTGGTCAATGCCTTTGTTGTGCCCTCGGGCA
GCATCTTTGTCTACACAGGCCTCCTTAAACAAGTACAGACCACTGGCGCT
TTGGCTTTCATCCTTGGCCACGAGATCAGTCACGCGCTTGCCAGGCATTC
CGTCGAAAAGATGGGCATTTTATGTGTAGGCTCGTTCTTCGTCGATTTCT
GCGCGGGGTTCTTGGGTTCGTCTGCCCATCGTTATTTGCAATACATGTTG
CTGCCTTACCTACAAGCGTTGATTTTGGACTTGCCCTTTTCTAGAAGACT
GGAGACAGAGGCGGATGTATTGGGCGTGCAGCTGATGGCGAACGCGGGAT
ATGATCCACAGGAAGCTATAGAGGCTTGGAAGCGGATGGAACAAGGAGAG
GAGCATGGTGGCGGTGGGAGAAAGGCGATGGAGTTCGTTTCCACTCATCC
CTCGCACCACACAAGGATAGAGCGTTTGACGGCCTTGCTACCAAAAGCAC
GCGCGATGCAACAACAAGCAGTGCGAGTCAAGCTGCAACGAGGAGAAAAA
GTGCCGGATAGCAAGCAGTCAATTTCCCCCTCATCCTCCATGCGCCACGG
GAGGACGTCTAAGGAGGTAGAAGCCATCCGTCAACGACGACGTGAGGAGT
CGGCTCAGACTGCTTTGCGAGCCTCCTCTCTTATTCCACCACCGCCGCCA
CAGTAAAGAGAGAGAATTTGCTGAAGAATATATTGAACGGAGACTCATGC
GCAGACTGTCTGAGTTTAGGGAAGGTTTTATGGTACAGTGCTTTACCGCC
GCAACTAAACACGGCAGGCTTTGAGACCGGACTTCAAAATCTCGGCATTC
GCCGCTTTCAAGCTCGCACCACCCTCCATGGTATTCCGTTGCACTACCTG
GCATGTCGGCGCCACCGTGTTCATTATCCCTCACTCTTACATGCCTGGCA
CCGCCTCCACCTCCCAAGCCCGGTTCACAACACACGGACATGGGCCAGCA
ATCGTGAGGCAGGGGTGAAGCTCTCTCGCCACACGCGTCGCTTTCTTTTC
ACGTGACATTACTTGGAGCCACACTCAAAGACAAAACGCAGGGACTGTGG
CACACAAACACAGAAATGAGAATATCCATGCTCACGCTGTTTGGTCAATA
CTGGATGTCACCTCAATCCCGCCCATCGACTGCATCCCTGCAGGGATCTC
TGCCGCCTCTCGTCGGCCTTGCATTTCTTCTCCAGACAGGCTGTGAGTCG
CTATCCGTGTACGGGTGGCATTCCCTCTGGGGCGCAGCATGGGGTGCGT

Coding sequence (CDS) from alignment at scaffold_18:482627..484575-

>mRNA_6703 ID=mRNA_6703|Name=jgi.p|Nanoce1779_2|597766|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_18:482627..484575- (Nannochloropsis oceanica)
ATGGCGATGCTGATGCCACGGAGGGGCTTGATGTGCTTGCGACATCTAGC
TCGTAAACCTCCTGCCTCCTCAGCCAAGCCCCATTTAACTCTCCCAAAAC
GACCCCCAAATTGCATCTCTACTACCTTCGCCACGAAACCACTCCGCGCT
TACACAACCCATGGCAGAAGGCCTCCACCCCGCCGCAGCAGTGGAGGCGA
AGGTATATCCCCAGAGCAACTCCAAGCAATTTTGAGAATAGCTGGCCGAT
TGCTAGGGAGCCTGGCCCACACGATTCGGGCGCGCGGCTTGCACAAATCC
AAACCCATGTTGGTGGCGGGGCTCTTGCTTGTTCCTACTGGCTTGGGTGG
TGCTTTTTTCGTGTCGCATCTCGAATCTGCCCCGCTGACGGGACGAACGC
AGCTCGTCTTCCTCAATACGACGCAAGAGATGGAGTTGGGAGTCATGGCG
GCTTCGCTGGTGTACAAGGCAGAGAAAGAGCACATTCTGCCACGCTCTGC
ACCCGAGACGATTATTGTCCACGACATTTCTGCGGGGCTTCTGAAAAGCC
TAAAACAGCAAATACAAGGACAAGGAGAGGACGCCGCTCGCCTCCGTGAC
CGCATTACCGACATGCAGTGGGAAGTGAGCGTCATTGATAGTGATGTGGT
CAATGCCTTTGTTGTGCCCTCGGGCAGCATCTTTGTCTACACAGGCCTCC
TTAAACAAGTACAGACCACTGGCGCTTTGGCTTTCATCCTTGGCCACGAG
ATCAGTCACGCGCTTGCCAGGCATTCCGTCGAAAAGATGGGCATTTTATG
TGTAGGCTCGTTCTTCGTCGATTTCTGCGCGGGGTTCTTGGGTTCGTCTG
CCCATCGTTATTTGCAATACATGTTGCTGCCTTACCTACAAGCGTTGATT
TTGGACTTGCCCTTTTCTAGAAGACTGGAGACAGAGGCGGATGTATTGGG
CGTGCAGCTGATGGCGAACGCGGGATATGATCCACAGGAAGCTATAGAGG
CTTGGAAGCGGATGGAACAAGGAGAGGAGCATGGTGGCGGTGGGAGAAAG
GCGATGGAGTTCGTTTCCACTCATCCCTCGCACCACACAAGGATAGAGCG
TTTGACGGCCTTGCTACCAAAAGCACGCGCGATGCAACAACAAGCAGTGC
GAGTCAAGCTGCAACGAGGAGAAAAAGTGCCGGATAGCAAGCAGTCAATT
TCCCCCTCATCCTCCATGCGCCACGGGAGGACGTCTAAGGAGGTAGAAGC
CATCCGTCAACGACGACGTGAGGAGTCGGCTCAGACTGCTTTGCGAGCCT
CCTCTCTTATTCCACCACCGCCGCCACAGTAA

Synonyms

Publications