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Properties
Property Name | Value |
TranscriptId | 550673 |
Track | FilteredModels2 |
ProteinId | 550587 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_2 | supercontig | scaffold_2:1425099..1428461 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1178 ID=mRNA_1178|Name=jgi.p|Nanoce1779_2|550587|organism=Nannochloropsis oceanica|type=mRNA|length=2672bp GTGCCTGCGGCGGATCCTCTGGGGGCGGTCGCGGTGGCTGCTGCGAGACC AGATCCATGTCTTTGGCCGGGCTGTGATGTTGGTTGTGAAATAAGGTGTT GTGGGTCAATTTTCCAAACGAAAATCTGTCTGGGGCTCCCAGACAGGGAG GGGCTTCTAGCACGTCGGCCGTGAGACACCGGCCCGGTGTTTGTTGATAT TGATACTAAACATTTATATTCGCGGATGGAATATCATAAAATGATTCACC ATCACACAGATGCACACACAACGAACAGTAAAGGGGACAGTGAAAAGCAT CCTCTCGATCCCCGCATTGCGTGGCTGCTGCTAAGCTTCCCGTGCTTTCC TCGTCTTCGGGAGCTCCCCTTCAACCCTGCCATCACACACCGCACTACAC CGTCCCATGGCTACAAACCATCCGCGGCGGCACTACCGTCGCCCGCTGCT TTTCCACCTGTCTCTTCAATTCGCCCTTGCCTTTGTTACTGCCGCGGCCG CAGCCTCCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAGAACACCACGCTT TGCCAGCCTATCCAAGGCCAGCGGGCCAAGGAAGTCTACGGCTTTCGGGA CGGAGACCCCAACAACACCAAGTACGAGACTTACGACTGGGACGTAGTCA GTACCGTGGCCTGGACACCGGTGCCTCAATTGGTCTGCCATGCCCACGCT CGGGGTGCGCGCGTGGTAAGTCAGGGTATCATGGCCCCCCCAAACCCCCT TCCCATCTCCGCCTCCGATGACGCCACCGCCCGGGCCATCTGGATCACCA ACACCGTCAATCAAATCCAATCCCAGTTTCTCGACGGCATGGTTTTTGAT TTTGAGGGACCCCTGCTGCCTAGTGACCCGATGAATGTTAATTACGTCTT GCTGGTGAATGAGACAAGAGCGGCGTTACACGCGGCCGTGCCAGGCTCTC AGGTGGGCGTGTGTTTGGCTTGGAACCCCCACGGCGTCGATGGACGGTAC TACGACAATCTAAACCTGATGAAGGCGGCCGACTTGGCCTACATCATGAG CTATGACACACGGTCACAAATTCTCGGTCAGTGCATCGCAAGTGCCAACG CCGCCTTGCCGGCAACGAGGTGGGGACTTGAAGAGTACCTTACCCTTGGG GCAGATCCGCAAAAAATGATTCTGGGCGTTCCGTGGTACGGATATGATTA TACGTGTCAGGAGGAGGAGGAGGAGGAGGGGAATGAAGAGATTAATCCTC TGGATGTAAACTGCCCGATAGCCATGGTGCCCTTCCGAGGTGTGGGCTGC TCTGATGCCGCCGGTGTCCAAGTACCCTATTCCATCATACAGGAGCGGTT GGTCGCGGGTAAGACGGCCACGGGTCGGATGTGGGACGCATACATGCAAA CGCCTTTCTACAACTATATAGACGAAGGGGATGGGAGCCTGCACCAGGTG CATTACGATGACGCGGAATCCCTGCGGTTGAAGTATGGCGTGGCGCGAGA GCTGGGATTGCGGGGAGTGGGACCCTATACGTTTGATGACTTACCCGGGG TTGGAGAGGGAGGGAAGGAGGGGGAGGAGGCGGCAAGGGGAATGTGGGAG GCATTGAGGGCTTTCACAGACGAGGAAGAAGAGCAGGGGAAGGAGCGGAA GGGGGAGAGGAAGAGGGGGTTGAGGAAGGGAGGAGGGTGAGGGAGGAAGT GTATAAGCACATGTTCAGTACAAAATCCAAAACACAAAGACTTGATACAT AGAAGGGGACACAAAAATAAGACGGAAAAAGCAGAGAGGTATAATGCGGT GAAACTTAGAAGGTGCGTTTTCGGCGTTCACCTGCCAATTTCTTCTACTT CTTGTTCTTCTCCATTTCCTTCTCCTTCTTTGCACATGTCACTGTATGCA AGTATTGCTGTACACCCTCTCTACAATCCCGTCTTTTTTACCTTTCAATC CCATTTTCCCCTTTCTACCTCCTGTCTCTCACTCCACCTTTCCCCCGACC GATTCGTACCTTGCCCGCATCATCGCCTTCTGCACCTCTTTCGAATCGTA CACCTCCCTCGCCGACGGCCTCCTCCCCCCTCCCCTCCTCCCCTCCAGCC CTCCGCCACCAGCACCCACCCCACTCTTGCTCCCTGACAAGAGCGCCTGG TCTGCTCGTACAGGCTCCGTGATCCCCCCCTTATCCCTTCCCAGGCCCTC CCCCTCCTTCCAGCCTAACGACCTCAGCATTTGATGTCCCACATTCCCCT CTCCCAATGGTTTGTCCACCCCTGCCGTCTCCACATCCGTCTTCCTCCTC TCTGCGTCCCTGCTTTCTTCCTTCCTTTGGTCTCGGTCTCGGTCTCGGTC GTCTCGCCGCCGCTCCCTCTCACGTCCTCCTCCTCGCCCTCCTCCCCTCC CTCGATCCCGTCCTTCTCCCTCCTTTAGACTCTTGGGTCTATCGTCCTGT CCGTACAATTGTCTCCTCTCCTCCGCCCGATCTCGATACTGCTGCTGCTG CTGTAGCATCACGCCTTCCGCCAATTGTTTGGCCAGATTTTCAGCGTGAA GGGCGCTTTTGGCCTCGTGTTTTCGCCACTGGTCCCACGAGTTGAATGCA CGTCTACACAACAGACAGACAGGCTCGCCATTGACTTCTCCGACTATCTG GGAGGGAGGGAGGGAGGGAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|550587 >mRNA_1178-protein ID=mRNA_1178-protein|Name=jgi.p|Nanoce1779_2|550587|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp MATNHPRRHYRRPLLFHLSLQFALAFVTAAAAASPGSPSPCPCENTTLCQ PIQGQRAKEVYGFRDGDPNNTKYETYDWDVVSTVAWTPVPQLVCHAHARG ARVVSQGIMAPPNPLPISASDDATARAIWITNTVNQIQSQFLDGMVFDFE GPLLPSDPMNVNYVLLVNETRAALHAAVPGSQVGVCLAWNPHGVDGRYYD NLNLMKAADLAYIMSYDTRSQILGQCIASANAALPATRWGLEEYLTLGAD PQKMILGVPWYGYDYTCQEEEEEEGNEEINPLDVNCPIAMVPFRGVGCSD AAGVQVPYSIIQERLVAGKTATGRMWDAYMQTPFYNYIDEGDGSLHQVHY DDAESLRLKYGVARELGLRGVGPYTFDDLPGVGEGGKEGEEAARGMWEAL RAFTDEEEEQGKERKGERKRGLRKGGG* back to topmRNA from alignment at scaffold_2:1425099..1428461+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1178 ID=mRNA_1178|Name=jgi.p|Nanoce1779_2|550587|organism=Nannochloropsis oceanica|type=mRNA|length=3363bp|location=Sequence derived from alignment at scaffold_2:1425099..1428461+ (Nannochloropsis oceanica) GTGCCTGCGGCGGATCCTCTGGGGGCGGTCGCGGTGGCTGCTGCGAGACC
AGATCCATGTCTTTGGCCGGGCTGTGATGTTGGTTGTGAAATAAGGTGTT
GTGGGTCAATTTTCCAAACGAAAATCTGTCTGGGGCTCCCAGACAGGGAG
GGGCTTCTAGCACGTCGGCCGTGAGACACCGGCCCGGTGTTTGTTGATAT
TGATACTAAACATTTATATTCGCGGATGGAATATCATAAAATGATTCACC
ATCACACAGATGCACACACAACGAACAGTAAAGGGGACAGTGAAAAGCAT
CCTCTCGATCCCCGCATTGCGTGGCTGCTGCTAAGCTTCCCGTGCTTTCC
TCGTCTTCGGGAGCTCCCCTTCAACCCTGCCATCACACACCGCACTACAC
CGTCCCATGGCTACAAACCATCCGCGGCGGCACTACCGTCGCCCGCTGCT
TTTCCACCTGTCTCTTCAATTCGCCCTTGCCTTTGTTACTGCCGCGGCCG
CAGCCTCCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAGAACACCACGCTT
TGCCAGCCTATCCAAGGCCAGCGGGCCAAGGAAGTCTACGGCTTTCGGGA
CGGAGACCCCAACAACACCAAGTACGAGACTTACGACTGGGACGTAGTCA
GTACCGTGGCCTGGACACCGGTGCCTCAATTGGTCTGCCATGCCCACGCT
CGGGGTGCGCGCGTGGTAAGTCAGGGTGTTGACGTGCCGTCTTGTTATAA
TTCAAAAATCTCACGGGGGGACTTTGTGTGGTTTTGGGGGACGGGGAGAC
AGGGGTTTCTGCTTGTAATTGAGATGCCCACCCTTATTCTCGGCGACTGG
TACAAGGGGCCCCTGGTAGGCTGTGGTATTGCGTCGAGTTTGTGGACGAG
ACGGAAAGAAGAGTGCTGCGAGGGGTTGCTTGGTTGTCGTCCGCACCCCG
AGGAAAACGTGACCGGTATATGTAGCCCTTTTTCTGTGTAACCTGAATAC
CACACGAGCCTTGGTACAAAATGGTCAATGAGCTTAGTGTTACGATTGCG
AGTACTTTCGTGGTTTTGATTGTTTGTTGCCCTCATTGTCAAACATCACG
GAGCCCTTGGATTGGTGCGGACAGAGAAGCGAGTGCATGATGAATCAGAA
TCAATAGGGTGCAACCCTCACCGCTCATCACCGCAGAAGAGCGTGTCACC
ACCTCGTTCTTTCTTCCACCTCACCCTCTGTCTCCCTCCTTCCCTCCTTA
CCCGCTATACCCCCCATATAGATCATGGCCCCCCCAAACCCCCTTCCCAT
CTCCGCCTCCGATGACGCCACCGCCCGGGCCATCTGGATCACCAACACCG
TCAATCAAATCCAATCCCAGTTTCTCGACGGCATGGTTTTTGATTTTGAG
GGACCCCTGCTGCCTAGTGACCCGATGAATGTTAATTACGTCTTGCTGGT
GAATGAGACAAGAGCGGCGTTACACGCGGCCGTGCCAGGCTCTCAGGTGG
GCGTGTGTTTGGCTTGGAACCCCCACGGCGTCGATGGACGGTACTACGAC
AATCTAAACCTGATGAAGGCGGCCGACTTGGCCTACATCATGAGCTATGA
CACACGGTCACAAATTCTCGGTCAGTGCATCGCAAGTGCCAACGCCGCCT
TGCCGGCAACGAGGTGGGGACTTGAAGAGTACCTTACCCTTGGGGCAGAT
CCGCAAAAAATGATTCTGGGCGTTCCGTGGTACGGATATGATTATACGTG
TGTGGGAGGAGGGAAAGGAAGAAGGGGGGGGAATGGAACGACGCGTCATT
TTGGCGAGCGTGGGGATGAAACTGGGTCCCCGGCTCTGGCCATGATGTTG
GAAATGAAGAGGGAGGAGGAGGAGGAGGAGGAGTGGGAGGAGGAGAAGCA
GGAGGAGGAGGAGGAGGAGGGGAATGAAGAGATTAATCCTCTGGATGTAA
ACTGCCCGATAGCCATGGTGCCCTTCCGAGGTGTGGGCTGCTCTGATGCC
GCCGGTGTCCAAGTACCCTATTCCATCATACAGGAGCGGTTGGTCGCGGG
TAAGACGGCCACGGGTCGGATGTGGGACGCATACATGCAAACGCCTTTCT
ACAACTATATAGACGAAGGGGATGGGAGCCTGCACCAGGTGCATTACGAT
GACGCGGAATCCCTGCGGTTGAAGTATGGCGTGGCGCGAGAGCTGGGATT
GCGGGGAGTGGGACCCTATACGTTTGATGACTTACCCGGGGTTGGAGAGG
GAGGGAAGGAGGGGGAGGAGGCGGCAAGGGGAATGTGGGAGGCATTGAGG
GCTTTCACAGACGAGGAAGAAGAGCAGGGGAAGGAGCGGAAGGGGGAGAG
GAAGAGGGGGTTGAGGAAGGGAGGAGGGTGAGGGAGGAAGTGTATAAGCA
CATGTTCAGTACAAAATCCAAAACACAAAGACTTGATACATAGAAGGGGA
CACAAAAATAAGACGGAAAAAGCAGAGAGGTATAATGCGGTGAAACTTAG
AAGGTGCGTTTTCGGCGTTCACCTGCCAATTTCTTCTACTTCTTGTTCTT
CTCCATTTCCTTCTCCTTCTTTGCACATGTCACTGTATGCAAGTATTGCT
GTACACCCTCTCTACAATCCCGTCTTTTTTACCTTTCAATCCCATTTTCC
CCTTTCTACCTCCTGTCTCTCACTCCACCTTTCCCCCGACCGATTCGTAC
CTTGCCCGCATCATCGCCTTCTGCACCTCTTTCGAATCGTACACCTCCCT
CGCCGACGGCCTCCTCCCCCCTCCCCTCCTCCCCTCCAGCCCTCCGCCAC
CAGCACCCACCCCACTCTTGCTCCCTGACAAGAGCGCCTGGTCTGCTCGT
ACAGGCTCCGTGATCCCCCCCTTATCCCTTCCCAGGCCCTCCCCCTCCTT
CCAGCCTAACGACCTCAGCATTTGATGTCCCACATTCCCCTCTCCCAATG
GTTTGTCCACCCCTGCCGTCTCCACATCCGTCTTCCTCCTCTCTGCGTCC
CTGCTTTCTTCCTTCCTTTGGTCTCGGTCTCGGTCTCGGTCGTCTCGCCG
CCGCTCCCTCTCACGTCCTCCTCCTCGCCCTCCTCCCCTCCCTCGATCCC
GTCCTTCTCCCTCCTTTAGACTCTTGGGTCTATCGTCCTGTCCGTACAAT
TGTCTCCTCTCCTCCGCCCGATCTCGATACTGCTGCTGCTGCTGTAGCAT
CACGCCTTCCGCCAATTGTTTGGCCAGATTTTCAGCGTGAAGGGCGCTTT
TGGCCTCGTGTTTTCGCCACTGGTCCCACGAGTTGAATGCACGTCTACAC
AACAGACAGACAGGCTCGCCATTGACTTCTCCGACTATCTGGGAGGGAGG
GAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_2:1425099..1428461+ >mRNA_1178 ID=mRNA_1178|Name=jgi.p|Nanoce1779_2|550587|organism=Nannochloropsis oceanica|type=CDS|length=3852bp|location=Sequence derived from alignment at scaffold_2:1425099..1428461+ (Nannochloropsis oceanica) ATGGCTACAAACCATCCGCGGCGGCACTACCGTCGCCCGCTGCTTTTCCA CCTGTCTCTTCAATTCGCCCTTGCCTTTGTTACTGCCGCGGCCGCAGCCT CCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAGAACACCACGCTTTGCCAG CCTATCCAAGGCCAGCGGGCCAAGGAAGTCTACGGCTTTCGGGACGGAGA CCCCAACAACACCAAGTACGAGACTTACGACTGGGACGTAGTCAGTACCG TGGCCTGGACACCGGTGCCTCAATTGGTCTGCCATGCCCACGCTCGGGGT GCGCGCGTGGTAAGTCAGGGTATCATGGCCCCCCCAAACCCCCTTCCCAT CTCCGCCTCCGATGACGCCACCGCCCGGGCCATCTGGATCACCAACACCG TCAATCAAATCCAATCCCAGTTTCTCGACGGCATGGTTTTTGATTTTGAG GGACCCCTGCTGCCTAGTGACCCGATGAATGTTAATTACGTCTTGCTGGT GAATGAGACAAGAGCGGCGTTACACGCGGCCGTGCCAGGCTCTCAGGTGG GCGTGTGTTTGGCTTGGAACCCCCACGGCGTCGATGGACGGTACTACGAC AATCTAAACCTGATGAAGGCGGCCGACTTGGCCTACATCATGAGCTATGA CACACGGTCACAAATTCTCGGTCAGTGCATCGCAAGTGCCAACGCCGCCT TGCCGGCAACGAGGTGGGGACTTGAAGAGTACCTTACCCTTGGGGCAGAT CCGCAAAAAATGATTCTGGGCGTTCCGTGGTACGGATATGATTATACGTG TCAGGAGGAGGAGGAGGAGGAGGGGAATGAAGAGATTAATCCTCTGGATG TAAACTGCCCGATAGCCATGGTGCCCTTCCGAGGTGTGGGCTGCTCTGAT GCCGCCGGTGTCCAAGTACCCTATTCCATCATACAGGAGCGGTTGGTCGC GGGTAAGACGGCCACGGGTCGGATGTGGGACGCATACATGCAAACGCCTT TCTACAACTATATAGACGAAGGGGATGGGAGCCTGCACCAGGTGCATTAC GATGACGCGGAATCCCTGCGGTTGAAGTATGGCGTGGCGCGAGAGCTGGG ATTGCGGGGAGTGGGACCCTATACGTTTGATGACTTACCCGGGGTTGGAG AGGGAGGGAAGGAGGGGGAGGAGGCGGCAAGGGGAATGTGGGAGGCATTG AGGGCTTTCACAGACGAGGAAGAAGAGCAGGGGAAGGAGCGGAAGGGGGA GAGGAAGAGGGGGTTGAGGAAGGGAGGAGGGTGAATGGCTACAAACCATC CGCGGCGGCACTACCGTCGCCCGCTGCTTTTCCACCTGTCTCTTCAATTC GCCCTTGCCTTTGTTACTGCCGCGGCCGCAGCCTCCCCTGGTAGCCCTTC CCCCTGTCCGTGCGAGAACACCACGCTTTGCCAGCCTATCCAAGGCCAGC GGGCCAAGGAAGTCTACGGCTTTCGGGACGGAGACCCCAACAACACCAAG TACGAGACTTACGACTGGGACGTAGTCAGTACCGTGGCCTGGACACCGGT GCCTCAATTGGTCTGCCATGCCCACGCTCGGGGTGCGCGCGTGGTAAGTC AGGGTATCATGGCCCCCCCAAACCCCCTTCCCATCTCCGCCTCCGATGAC GCCACCGCCCGGGCCATCTGGATCACCAACACCGTCAATCAAATCCAATC CCAGTTTCTCGACGGCATGGTTTTTGATTTTGAGGGACCCCTGCTGCCTA GTGACCCGATGAATGTTAATTACGTCTTGCTGGTGAATGAGACAAGAGCG GCGTTACACGCGGCCGTGCCAGGCTCTCAGGTGGGCGTGTGTTTGGCTTG GAACCCCCACGGCGTCGATGGACGGTACTACGACAATCTAAACCTGATGA AGGCGGCCGACTTGGCCTACATCATGAGCTATGACACACGGTCACAAATT CTCGGTCAGTGCATCGCAAGTGCCAACGCCGCCTTGCCGGCAACGAGGTG GGGACTTGAAGAGTACCTTACCCTTGGGGCAGATCCGCAAAAAATGATTC TGGGCGTTCCGTGGTACGGATATGATTATACGTGTCAGGAGGAGGAGGAG GAGGAGGGGAATGAAGAGATTAATCCTCTGGATGTAAACTGCCCGATAGC CATGGTGCCCTTCCGAGGTGTGGGCTGCTCTGATGCCGCCGGTGTCCAAG TACCCTATTCCATCATACAGGAGCGGTTGGTCGCGGGTAAGACGGCCACG GGTCGGATGTGGGACGCATACATGCAAACGCCTTTCTACAACTATATAGA CGAAGGGGATGGGAGCCTGCACCAGGTGCATTACGATGACGCGGAATCCC TGCGGTTGAAGTATGGCGTGGCGCGAGAGCTGGGATTGCGGGGAGTGGGA CCCTATACGTTTGATGACTTACCCGGGGTTGGAGAGGGAGGGAAGGAGGG GGAGGAGGCGGCAAGGGGAATGTGGGAGGCATTGAGGGCTTTCACAGACG AGGAAGAAGAGCAGGGGAAGGAGCGGAAGGGGGAGAGGAAGAGGGGGTTG AGGAAGGGAGGAGGGTGAATGGCTACAAACCATCCGCGGCGGCACTACCG TCGCCCGCTGCTTTTCCACCTGTCTCTTCAATTCGCCCTTGCCTTTGTTA CTGCCGCGGCCGCAGCCTCCCCTGGTAGCCCTTCCCCCTGTCCGTGCGAG AACACCACGCTTTGCCAGCCTATCCAAGGCCAGCGGGCCAAGGAAGTCTA CGGCTTTCGGGACGGAGACCCCAACAACACCAAGTACGAGACTTACGACT GGGACGTAGTCAGTACCGTGGCCTGGACACCGGTGCCTCAATTGGTCTGC CATGCCCACGCTCGGGGTGCGCGCGTGGTAAGTCAGGGTATCATGGCCCC CCCAAACCCCCTTCCCATCTCCGCCTCCGATGACGCCACCGCCCGGGCCA TCTGGATCACCAACACCGTCAATCAAATCCAATCCCAGTTTCTCGACGGC ATGGTTTTTGATTTTGAGGGACCCCTGCTGCCTAGTGACCCGATGAATGT TAATTACGTCTTGCTGGTGAATGAGACAAGAGCGGCGTTACACGCGGCCG TGCCAGGCTCTCAGGTGGGCGTGTGTTTGGCTTGGAACCCCCACGGCGTC GATGGACGGTACTACGACAATCTAAACCTGATGAAGGCGGCCGACTTGGC CTACATCATGAGCTATGACACACGGTCACAAATTCTCGGTCAGTGCATCG CAAGTGCCAACGCCGCCTTGCCGGCAACGAGGTGGGGACTTGAAGAGTAC CTTACCCTTGGGGCAGATCCGCAAAAAATGATTCTGGGCGTTCCGTGGTA CGGATATGATTATACGTGTCAGGAGGAGGAGGAGGAGGAGGGGAATGAAG AGATTAATCCTCTGGATGTAAACTGCCCGATAGCCATGGTGCCCTTCCGA GGTGTGGGCTGCTCTGATGCCGCCGGTGTCCAAGTACCCTATTCCATCAT ACAGGAGCGGTTGGTCGCGGGTAAGACGGCCACGGGTCGGATGTGGGACG CATACATGCAAACGCCTTTCTACAACTATATAGACGAAGGGGATGGGAGC CTGCACCAGGTGCATTACGATGACGCGGAATCCCTGCGGTTGAAGTATGG CGTGGCGCGAGAGCTGGGATTGCGGGGAGTGGGACCCTATACGTTTGATG ACTTACCCGGGGTTGGAGAGGGAGGGAAGGAGGGGGAGGAGGCGGCAAGG GGAATGTGGGAGGCATTGAGGGCTTTCACAGACGAGGAAGAAGAGCAGGG GAAGGAGCGGAAGGGGGAGAGGAAGAGGGGGTTGAGGAAGGGAGGAGGGT GA back to top
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