jgi.p|Nanoce1779_2|573811, mRNA_691 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573811
Unique Name	mRNA_691
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2145
Alignment location	scaffold_2:204870..207014 +

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Properties


Property Name	Value
TranscriptId	573897
Track	FilteredModels2
ProteinId	573811

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:204870..207014 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573811	gene_691	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573811	mRNA_691-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_691	CDS_691	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:204870..207014+
coding sequence from alignment at scaffold_2:204870..207014+

mRNA sequence

>mRNA_691 ID=mRNA_691|Name=jgi.p|Nanoce1779_2|573811|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp
GCAAGGGATGAAGCTTGAATGTCGACTCCATCTTGGGTTAAGAGAAGAGC
GAGAGTAGTGGCTGCTGCCTACCTTGGTGGTGCTATGTGTGGTTGGGATA
AGTAACGAGAATAAGTGCGGAGTTCCAAATGAGCAAGCAGGACATTGTCG
ACAGCCCAAGAAGAGGGTTTGAGACTATTGGGGCGGTGTGCGAAAGCACG
TGGGGCAAACAAATGTATGGAAAGGCTGCTTGAACTTTGAAGCAGCTGTC
CAGCCATTCGTGTGAGAGAGGAGGTCGTTCTGGCACTCTCTGTCCTTGCG
TTGAACTCACACATCCTCATCATGTCTACATCGCACAGCCATACAGTCGC
AAAGGAATAATAGCCTTGAGTAGTCACACCCCAGCCAGCCTGTTTATCAA
AGACGTCTAGAGGCCGCTGCATTCCCCTTCGGATACGACTAGTCGGATAC
GACTAGTAGCTGTCCATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGAT
GGTGCTAATTCTCCTGTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGC
GTGGTATCATCGTTCCCACACATATGCGCCGTGCCATGGGATCTTTTTCG
ACGTGGACCTCACCCCTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATC
CTCGTCTTTTGCTTCTTCATCGGTGACGGTGACGACAGCCAGATTAAGCT
CTTTTCACCGCCACCGTTCTCCGTTTATGCCGCCCACCAACACGGCACTC
TTTGCATCCTCGACCGCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGC
CTCGTTAAAATCAAAGGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGG
ACGACGAGGATGAGATGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGC
GGTGAGGCTATGGATGCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAG
GACGGGGGCATTGGAAGGTGAAGATGATAAGGAGGAGGATGACGACGACG
AAGACGAGGACGAAGATGAGGATGGTGACAAGGAAGATAACGCTGAGGAG
GACCTTTCGGGAAATGACGATAGCGATGACGACGATGACAACGATGACAG
CAACGCCGTAAAGATCGATGCCATGGACCGCAAGCATGGCCTTCCCTCCT
CCATGTCCTCCTCTTCCTCCAGTCAAGACGAGGCAGAGAGCGACGACAAC
CTCGGCACGATTCAAATCCGGAATTCCCAAAGAAGCATCTCCTTGGACAT
AGATGTCTTGCACAATCATATACGTGGGATCATGGAAATCATCGGCAAAG
ATGACCATGATGTTTCTCTTTGGTTGACCAACGACCGCAGTATCCGCGAG
TACAATGACCGTTACAGGGGGAAACGCTCTGCGACGGATATTCTATCTTT
CCCCTTCCACGAATATAAGTCTCCTGGCGTACCCACACCAGAATCAGTGG
CATTGAATGGACAGATAAAAGATTTGGGGGATATGATGGTGTCGACTGGA
TACGTGCAACGGCAATGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGG
GGAGAATCAGTGGTCCGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGG
TATATGACGTCCAGGGTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTG
CATTTGCTTGGGTATGATCACGAGACAGAGAAGGAGTATGAGGAGATGGT
GAGGGAGGAGGAGAGGGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGG
CGGCTCCACCGATGGGAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCT
GCGGCAGCGGTGGGGGAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGG
GGTAAGGGCGACGAAGACAACAACAGCTCCTAAGAGGACTGCGAGTGCTG
CTGCCAGCTCGAAGTCCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGA
TAAGGAAAATAAAAAGACTGCATGACAAAGAATGTAAGTAGATAGAGGAG
AAACGCAACGTCGCCAAGCAAATTATCGAAGGCAGCCGTGTACTAGACAT
AAACAAGTACCTCTTTCCTCCTGTTTAATACCGACTGGGTTAAATCGATC
CAGAGAACAATAAAAGCAAAGCACATCCCCTAAATCGTTTTTGGA

protein sequence of jgi.p|Nanoce1779_2|573811

>mRNA_691-protein ID=mRNA_691-protein|Name=jgi.p|Nanoce1779_2|573811|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MPQRFPFSSSPMVLILLCTVTREAFGFQRGIIVPTHMRRAMGSFSTWTSP
LSSLSYSSSSSSSSFASSSVTVTTARLSSFHRHRSPFMPPTNTALFASST
ASSGAGKKKKAASLKSKASVKKVIEDEEDDEDEMTEAELLKVMQSGEAMD
AVWQRMMSQMERTGALEGEDDKEEDDDDEDEDEDEDGDKEDNAEEDLSGN
DDSDDDDDNDDSNAVKIDAMDRKHGLPSSMSSSSSSQDEAESDDNLGTIQ
IRNSQRSISLDIDVLHNHIRGIMEIIGKDDHDVSLWLTNDRSIREYNDRY
RGKRSATDILSFPFHEYKSPGVPTPESVALNGQIKDLGDMMVSTGYVQRQ
CARDEADWAAEGENQWSEERGASGAMARVYDVQGRLPFLVIHGLLHLLGY
DHETEKEYEEMVREEERVISEFARRFPEAAPPMGEPKKSKERNIAAAAVG
EDGGKAKKKASGVRATKTTTAPKRTASAAASSKSKAPPKNDFDSR*

mRNA from alignment at scaffold_2:204870..207014+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_691 ID=mRNA_691|Name=jgi.p|Nanoce1779_2|573811|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp|location=Sequence derived from alignment at scaffold_2:204870..207014+ (Nannochloropsis oceanica)
GCAAGGGATGAAGCTTGAATGTCGACTCCATCTTGGGTTAAGAGAAGAGC
GAGAGTAGTGGCTGCTGCCTACCTTGGTGGTGCTATGTGTGGTTGGGATA
AGTAACGAGAATAAGTGCGGAGTTCCAAATGAGCAAGCAGGACATTGTCG
ACAGCCCAAGAAGAGGGTTTGAGACTATTGGGGCGGTGTGCGAAAGCACG
TGGGGCAAACAAATGTATGGAAAGGCTGCTTGAACTTTGAAGCAGCTGTC
CAGCCATTCGTGTGAGAGAGGAGGTCGTTCTGGCACTCTCTGTCCTTGCG
TTGAACTCACACATCCTCATCATGTCTACATCGCACAGCCATACAGTCGC
AAAGGAATAATAGCCTTGAGTAGTCACACCCCAGCCAGCCTGTTTATCAA
AGACGTCTAGAGGCCGCTGCATTCCCCTTCGGATACGACTAGTCGGATAC
GACTAGTAGCTGTCCATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGAT
GGTGCTAATTCTCCTGTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGC
GTGGTATCATCGTTCCCACACATATGCGCCGTGCCATGGGATCTTTTTCG
ACGTGGACCTCACCCCTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATC
CTCGTCTTTTGCTTCTTCATCGGTGACGGTGACGACAGCCAGATTAAGCT
CTTTTCACCGCCACCGTTCTCCGTTTATGCCGCCCACCAACACGGCACTC
TTTGCATCCTCGACCGCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGC
CTCGTTAAAATCAAAGGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGG
ACGACGAGGATGAGATGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGC
GGTGAGGCTATGGATGCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAG
GACGGGGGCATTGGAAGGTGAAGATGATAAGGAGGAGGATGACGACGACG
AAGACGAGGACGAAGATGAGGATGGTGACAAGGAAGATAACGCTGAGGAG
GACCTTTCGGGAAATGACGATAGCGATGACGACGATGACAACGATGACAG
CAACGCCGTAAAGATCGATGCCATGGACCGCAAGCATGGCCTTCCCTCCT
CCATGTCCTCCTCTTCCTCCAGTCAAGACGAGGCAGAGAGCGACGACAAC
CTCGGCACGATTCAAATCCGGAATTCCCAAAGAAGCATCTCCTTGGACAT
AGATGTCTTGCACAATCATATACGTGGGATCATGGAAATCATCGGCAAAG
ATGACCATGATGTTTCTCTTTGGTTGACCAACGACCGCAGTATCCGCGAG
TACAATGACCGTTACAGGGGGAAACGCTCTGCGACGGATATTCTATCTTT
CCCCTTCCACGAATATAAGTCTCCTGGCGTACCCACACCAGAATCAGTGG
CATTGAATGGACAGATAAAAGATTTGGGGGATATGATGGTGTCGACTGGA
TACGTGCAACGGCAATGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGG
GGAGAATCAGTGGTCCGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGG
TATATGACGTCCAGGGTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTG
CATTTGCTTGGGTATGATCACGAGACAGAGAAGGAGTATGAGGAGATGGT
GAGGGAGGAGGAGAGGGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGG
CGGCTCCACCGATGGGAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCT
GCGGCAGCGGTGGGGGAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGG
GGTAAGGGCGACGAAGACAACAACAGCTCCTAAGAGGACTGCGAGTGCTG
CTGCCAGCTCGAAGTCCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGA
TAAGGAAAATAAAAAGACTGCATGACAAAGAATGTAAGTAGATAGAGGAG
AAACGCAACGTCGCCAAGCAAATTATCGAAGGCAGCCGTGTACTAGACAT
AAACAAGTACCTCTTTCCTCCTGTTTAATACCGACTGGGTTAAATCGATC
CAGAGAACAATAAAAGCAAAGCACATCCCCTAAATCGTTTTTGGA

Coding sequence (CDS) from alignment at scaffold_2:204870..207014+

>mRNA_691 ID=mRNA_691|Name=jgi.p|Nanoce1779_2|573811|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_2:204870..207014+ (Nannochloropsis oceanica)
ATGCCACAGCGCTTCCCCTTCTCCTCAAGCCCGATGGTGCTAATTCTCCT
GTGCACCGTGACAAGAGAAGCGTTCGGTTTTCAGCGTGGTATCATCGTTC
CCACACATATGCGCCGTGCCATGGGATCTTTTTCGACGTGGACCTCACCC
CTCTCCTCCCTCTCCTACTCCTCTTCATCCTCATCCTCGTCTTTTGCTTC
TTCATCGGTGACGGTGACGACAGCCAGATTAAGCTCTTTTCACCGCCACC
GTTCTCCGTTTATGCCGCCCACCAACACGGCACTCTTTGCATCCTCGACC
GCCTCATCAGGTGCTGGGAAGAAGAAAAAGGCAGCCTCGTTAAAATCAAA
GGCATCGGTCAAGAAGGTGATTGAGGACGAGGAGGACGACGAGGATGAGA
TGACCGAGGCAGAGTTGCTAAAAGTGATGCAAAGCGGTGAGGCTATGGAT
GCGGTGTGGCAGCGTATGATGAGTCAGATGGAAAGGACGGGGGCATTGGA
AGGTGAAGATGATAAGGAGGAGGATGACGACGACGAAGACGAGGACGAAG
ATGAGGATGGTGACAAGGAAGATAACGCTGAGGAGGACCTTTCGGGAAAT
GACGATAGCGATGACGACGATGACAACGATGACAGCAACGCCGTAAAGAT
CGATGCCATGGACCGCAAGCATGGCCTTCCCTCCTCCATGTCCTCCTCTT
CCTCCAGTCAAGACGAGGCAGAGAGCGACGACAACCTCGGCACGATTCAA
ATCCGGAATTCCCAAAGAAGCATCTCCTTGGACATAGATGTCTTGCACAA
TCATATACGTGGGATCATGGAAATCATCGGCAAAGATGACCATGATGTTT
CTCTTTGGTTGACCAACGACCGCAGTATCCGCGAGTACAATGACCGTTAC
AGGGGGAAACGCTCTGCGACGGATATTCTATCTTTCCCCTTCCACGAATA
TAAGTCTCCTGGCGTACCCACACCAGAATCAGTGGCATTGAATGGACAGA
TAAAAGATTTGGGGGATATGATGGTGTCGACTGGATACGTGCAACGGCAA
TGTGCCCGGGATGAGGCGGATTGGGCCGCGGAGGGGGAGAATCAGTGGTC
CGAGGAAAGGGGGGCCTCGGGGGCTATGGCGAGGGTATATGACGTCCAGG
GTCGGCTGCCCTTTTTGGTGATTCATGGACTTTTGCATTTGCTTGGGTAT
GATCACGAGACAGAGAAGGAGTATGAGGAGATGGTGAGGGAGGAGGAGAG
GGTGATAAGTGAGTTTGCGAGGAGGTTCCCGGAGGCGGCTCCACCGATGG
GAGAGCCAAAAAAATCGAAGGAGAGGAATATAGCTGCGGCAGCGGTGGGG
GAAGACGGAGGCAAGGCAAAAAAAAAGGCGTCAGGGGTAAGGGCGACGAA
GACAACAACAGCTCCTAAGAGGACTGCGAGTGCTGCTGCCAGCTCGAAGT
CCAAAGCCCCCCCAAAAAACGACTTTGACTCCAGATAA

Synonyms

Publications