jgi.p|Nanoce1779_2|599105, mRNA_7540 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599105
Unique NamemRNA_7540
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length872
Alignment locationscaffold_20:211916..212787 -

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Properties
Property NameValue
TranscriptId599191
TrackFilteredModels2
ProteinId599105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:211916..212787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599105gene_7540Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599105mRNA_7540-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7540CDS_7540Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7540 ID=mRNA_7540|Name=jgi.p|Nanoce1779_2|599105|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
GGGGAGGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGAATGAGGAGGTGG
AGGAGGATGAGGATGAGGATGAGGATGAGGAGGAAGAAGAGGAAGGAGAA
AGTGGCAAGAGCAATAGTAGTAGCAATAGTAGTAGCAGCAGCAGTGGCAC
AACGAGCAACTCTGAGGTGGAGGAAAAAGAAGAGGAGGAGGACAACGAGA
ATGGATTGACCTCCCTGTCGAAGAGGAGAAAGAAAGCGAAGAAGACGAGG
AGGAGACGGTCCTGTACCTGTACAATTGCTGATGCTGCTGCTGTTCCTAT
TAGTACCACTACAAGTATTGCTAATGCTGCTGCTTCTGACGCGAGCAGAG
ATCGGGATAGGCGGAGTGGTGATGGTGTCGTCGCTACCACTACAGCTGCT
GTTGTTGCTACTGTTGCTCCAGCTGCTGAGATGCGACAGAGGCGGCCATG
TGGCTCTTCTTCTTGCCTAGTCCCTGCTCTGTGTCTATATTGGATTGTGG
ATTCTGATGCCTTAAAGCCAAAACTAAAGCAAGACAAGGAGGAGGAGGGG
AGAGGGGACAGGGAACAGCGAGGAGGTAGAGGAGGAAGGAGGAAGAAGGA
GAGGAGAAAACGAGCTTCGGCCTTGCAAGGATTGGACGGGGAGACTCTGC
ATTGGTTAAGGGCGAAGTGGCATGAGAAACAAAGCACGATGATTACGGAT
GTAGTTTAGCGTGAAAGATGTGGATATACTGGGGCAGTAATAGCAGCAGC
AGCAGCAACAACAACAAAAAGAGCCATTGACAAAAGCAGCAGCACAAATA
GCTGTGATGAGATTGAAGGAATCAACCATGCTAACAATAGGCGAAGAAAT
AAAACAAAACAACTAAAGTGAC
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protein sequence of jgi.p|Nanoce1779_2|599105

>mRNA_7540-protein ID=mRNA_7540-protein|Name=jgi.p|Nanoce1779_2|599105|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MRQRRPCGSSSCLVPALCLYWIVDSDALKPKLKQDKEEEGRGDREQRGGR
GGRRKKERRKRASALQGLDGETLHWLRAKWHEKQSTMITDV
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mRNA from alignment at scaffold_20:211916..212787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7540 ID=mRNA_7540|Name=jgi.p|Nanoce1779_2|599105|organism=Nannochloropsis oceanica|type=mRNA|length=872bp|location=Sequence derived from alignment at scaffold_20:211916..212787- (Nannochloropsis oceanica)
GGGGAGGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGAATGAGGAGGTGG
AGGAGGATGAGGATGAGGATGAGGATGAGGAGGAAGAAGAGGAAGGAGAA
AGTGGCAAGAGCAATAGTAGTAGCAATAGTAGTAGCAGCAGCAGTGGCAC
AACGAGCAACTCTGAGGTGGAGGAAAAAGAAGAGGAGGAGGACAACGAGA
ATGGATTGACCTCCCTGTCGAAGAGGAGAAAGAAAGCGAAGAAGACGAGG
AGGAGACGGTCCTGTACCTGTACAATTGCTGATGCTGCTGCTGTTCCTAT
TAGTACCACTACAAGTATTGCTAATGCTGCTGCTTCTGACGCGAGCAGAG
ATCGGGATAGGCGGAGTGGTGATGGTGTCGTCGCTACCACTACAGCTGCT
GTTGTTGCTACTGTTGCTCCAGCTGCTGAGATGCGACAGAGGCGGCCATG
TGGCTCTTCTTCTTGCCTAGTCCCTGCTCTGTGTCTATATTGGATTGTGG
ATTCTGATGCCTTAAAGCCAAAACTAAAGCAAGACAAGGAGGAGGAGGGG
AGAGGGGACAGGGAACAGCGAGGAGGTAGAGGAGGAAGGAGGAAGAAGGA
GAGGAGAAAACGAGCTTCGGCCTTGCAAGGATTGGACGGGGAGACTCTGC
ATTGGTTAAGGGCGAAGTGGCATGAGAAACAAAGCACGATGATTACGGAT
GTAGTTTAGCGTGAAAGATGTGGATATACTGGGGCAGTAATAGCAGCAGC
AGCAGCAACAACAACAAAAAGAGCCATTGACAAAAGCAGCAGCACAAATA
GCTGTGATGAGATTGAAGGAATCAACCATGCTAACAATAGGCGAAGAAAT
AAAACAAAACAACTAAAGTGAC
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Coding sequence (CDS) from alignment at scaffold_20:211916..212787-

>mRNA_7540 ID=mRNA_7540|Name=jgi.p|Nanoce1779_2|599105|organism=Nannochloropsis oceanica|type=CDS|length=274bp|location=Sequence derived from alignment at scaffold_20:211916..212787- (Nannochloropsis oceanica)
ATGCGACAGAGGCGGCCATGTGGCTCTTCTTCTTGCCTAGTCCCTGCTCT
GTGTCTATATTGGATTGTGGATTCTGATGCCTTAAAGCCAAAACTAAAGC
AAGACAAGGAGGAGGAGGGGAGAGGGGACAGGGAACAGCGAGGAGGTAGA
GGAGGAAGGAGGAAGAAGGAGAGGAGAAAACGAGCTTCGGCCTTGCAAGG
ATTGGACGGGGAGACTCTGCATTGGTTAAGGGCGAAGTGGCATGAGAAAC
AAAGCACGATGATTACGGATGTAG
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Synonyms
Publications