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Properties
| Property Name | Value |
|---|
| TranscriptId | 165654 |
| Track | FilteredModels2 |
| ProteinId | 165568 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:31835..34699 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7670 ID=mRNA_7670|Name=jgi.p|Nanoce1779_2|165568|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
AAAGAATGGGCAAAAAGAAGAAGCTATGTCTTCTATTGAAAACCACGCCA
CCGCCACCCTCCCTCGCCCGGGCATGCCTGCCGTCCCACTTTCTCCGTCC
AGGAAAGCACGTCCTCCAGCAGGACCTGAGTCTCGCCTTTTAAGCATGCG
AAACATCTCCTTGGTGAAACTGCATCAGGAAGACGGGATAGTTGAGGTCG
CGTGGCAGGATGGGGCCCGCGGCCTGTTCCATGGCGCATGGTTGAGGGAC
AACTGCTCCAAGTATTTTGACCCTTCCGGCGGGCAGCGCATTCAAAATAC
CTTGAATCTCGGAGCCGATGCCTACATCCTTACGCAAGCAATGTCATCGT
CTCTGGCTGGTGAAAATGCGAGCACCCCTTCTTCTTCTTCTCCCACCACC
CCGCATGAGCTCTTCAAAGTGACCTGGAAAGACGGCTTCTCCCACGCCTT
TCCATCCGCGTGGCTTCGTCAACACTGCTTTGAGACCCGCCAATACCACC
ATGTTCAGCCCCGATTATGGGGCCGAGATCTGGTGTCTTATTTTCCTGGG
CATGTTCTTCCCACAATTGCCCACAGTGACGTCGTCAAGGTTGCCGCGGG
GAAGGAAGCCGGGTGGGAGGTAGCTGCGCATGGTTTTGTCCAGTGGATCA
CCCACTTGCGTGATTACGGCGTAGCGCTCGTGGAGGGTGTGCCGACAGTC
CCTGGGACAGTTATGCGCATGGCGGATTTGATTGCCTACCACCGGAAAAC
GCACTACGGAGATTCATTTCAGGTTGTCTCAGCGCGCAAGCCCAAGCACT
TAGCGTACACGCCTGTGGAACTCGAAGTTCACACAGATCTCAACTACCGC
GAGTCCAGCCCGGGCATCCAGCTATTGCACTGCCTGGCTTCGGATGCGCA
AGGTGGGGAAAGCACGTTTGTGGATGGGTTTTTGGCGGCGGAGACCTTGC
GGCGAGAGAGCCCTGAGGATTTTGCAACACTGTGTGAGGTTCCAATCCCG
TTCAAGGTCAAGGATGGCTCTGGCTTCCAGTACTACAAGATTCCTACTAT
TTGCGTGGACGATGCCGGGCAGTTAGTCGAGGTTCATTTCAACGAGCGAA
CGCGCGGGCCTTTAGAGCTACCAGCAGCGGACATGGCTCGAGTGTATCGA
GCGTTGGCCCACTTTCAAGAGATAGCATGCCGGCCCGACTTGTGCGTGGA
GGTGAAAATGAAAGCAGGGGATATGGTGGCGTTTAACAACCGCCGGATCC
TGCATGGGCGGAAGGCGTTTGATCCGAGGACTGGGCTGCGGCATTTGGAA
GGAACGTACGTGGACATGGATGAGTTTGGATGTTGCTTGCGCAAAAATGG
GATAACGCCCTTGGGCATTGTGCGAGCGCAGGGCGGGCGAGGCGGAAGGG
GGATGGAAGGTAGTGAAAGCAAGGGGGGGGGGAAGAAGAGGGCGCAGAAT
CAACAGGCATTTGCATTAGCCTCTGTGGCGTTGACGCAGCTTGGGCAGCA
AACAGGGGATGGGAGGCACGGGAAGGCGACCGCGCCGCGAGCGTCACTTT
GAAAGGCCAGGCAGATATCATGAGATGGCAGCAGAAAGATATAAAGGAAG
CGGTCCGTTGTTGAGAGCAAAGGCAGGTTTGTTCATGAGATGCATGGTTT
GCGAGTTTGTTTTGGAGAAGACGAGGAAACATATGGTTTGTGCGCCGTTT
CGAGTATGTGTATGACGTATTGTTTTTGCAGGTATCTACCTTGGATTGTG
ATATTCATTCAACGCTGAGCAGCAATTTAAAAAAATGGGCGTGGAAATAT
TCAAGTTGTCGAGGAGAGACAGCAATCTTTGCGTGAGAGCAAGATAGGAA
GAGACGAGTTTGTGTAGAAACATGCACATACGAGCATGAGTGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|165568 >mRNA_7670-protein ID=mRNA_7670-protein|Name=jgi.p|Nanoce1779_2|165568|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MSSIENHATATLPRPGMPAVPLSPSRKARPPAGPESRLLSMRNISLVKLH
QEDGIVEVAWQDGARGLFHGAWLRDNCSKYFDPSGGQRIQNTLNLGADAY
ILTQAMSSSLAGENASTPSSSSPTTPHELFKVTWKDGFSHAFPSAWLRQH
CFETRQYHHVQPRLWGRDLVSYFPGHVLPTIAHSDVVKVAAGKEAGWEVA
AHGFVQWITHLRDYGVALVEGVPTVPGTVMRMADLIAYHRKTHYGDSFQV
VSARKPKHLAYTPVELEVHTDLNYRESSPGIQLLHCLASDAQGGESTFVD
GFLAAETLRRESPEDFATLCEVPIPFKVKDGSGFQYYKIPTICVDDAGQL
VEVHFNERTRGPLELPAADMARVYRALAHFQEIACRPDLCVEVKMKAGDM
VAFNNRRILHGRKAFDPRTGLRHLEGTYVDMDEFGCCLRKNGITPLGIVR
AQGGRGGRGMEGSESKGGGKKRAQNQQAFALASVALTQLGQQTGDGRHGK
ATAPRASL* back to topmRNA from alignment at scaffold_21:31835..34699- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7670 ID=mRNA_7670|Name=jgi.p|Nanoce1779_2|165568|organism=Nannochloropsis oceanica|type=mRNA|length=2865bp|location=Sequence derived from alignment at scaffold_21:31835..34699- (Nannochloropsis oceanica)
AAAGAATGGGCAAAAAGAAGTAAGGCAAAAAGCGATGATGCCTTCTCGTC
AATCCACACCTGCTAGCTATGTAAAGAGATGGAATAGGGCGCTCGTGCGC
TCCCTGCACACAGTGTCTGCTTGTTGTACTCAAGGGGCTGCATAACTCGG
CCATAAAGTGTTAAAAGGCACAGTCGTCTTTCAGTTCCCCATTCCCAGAC
CAACTTCCAGCGCGCCAAGCTGCCGTTTGGCCATTTTCTGTGGTCCCTTT
TTTTTTAAGAAGATAGGAATCTGCCTCATTCACGCCTTTGTTGGGTGTGT
CCTCTTATATTTCTGTGGTCTGTACCTGGTGTGAAATCCCCCACATGCTC
GCTCTTAGTCTTGGGCGTGCTCTCCTGAACCGGTGGTGGACTCTATGCAG
CGAGCTTCACTTTCCTAGCACGTGCAGACACGTGCATAGCAAAACTTCCC
ATCAAGAAGCAGTCACCCTCTAGCCCAATCCGTTTTCCCGATACATGGAC
GTATGCCTGACTCCAATCTTATCGACATTTCCACCTCCTTATACATCCAC
AGGAAGCTATGTCTTCTATTGAAAACCACGCCACCGCCACCCTCCCTCGC
CCGGGCATGCCTGCCGTCCCACTTTCTCCGTCCAGGAAAGCACGTCCTCC
AGCAGGACCTGAGTCTCGCCTTTTAAGCATGCGAAACATCTCCTTGGTAA
GAGATCGAGCGACAAAGAGACGCCAAAGTGTTGGGACGAGGCCTCTCAAA
ATCACCCATCTTCGGACCCCGTCCGGGTGTCTCTCCCCTGCTGGCATCAT
CGCTTGTCGCCTCTACAAACATTCCCGAACAGATTCTGGAATCACTTCTG
CTCCGCCTTTCTTATATTATAGTCTTTGAAAGTCTTTTCTGAGTCCTTTC
GTGTTAGCAAACGAAACACTGCATTCCCAATCTGTAATTCTCTTAGATTC
TCGGACACCCCGTTACCCCCATTTTCCCTCCCTCTCCCTCCCCACGCGCT
TACCTTTCCCACCCTCACCACTACCTAGGTGAAACTGCATCAGGAAGACG
GGATAGTTGAGGTCGCGTGGCAGGATGGGGCCCGCGGCCTGTTCCATGGC
GCATGGTTGAGGGACAACTGCTCCAAGTATTTTGACCCTTCCGGCGGGCA
GCGCATTCAAAATACCTTGAATCTCGGAGCCGATGCCTACATCCTTACGC
AAGCAATGTCATCGTCTCTGGCTGGTGAAAATGCGAGCACCCCTTCTTCT
TCTTCTCCCACCACCCCGCATGAGCTCTTCAAAGTGACCTGGAAAGACGG
CTTCTCCCACGCCTTTCCATCCGCGTGGCTTCGTCAACACTGCTTTGAGA
CCCGCCAATACCACCATGTTCAGCCCCGATTATGGGGCCGAGATCTGGTG
TCTTATTTTCCTGGGCATGTTCTTCCCACAATTGCCCACAGTGACGTCGT
CAAGGTTGCCGCGGGGAAGGAAGCCGGGTGGGAGGTAGCTGCGCATGGTT
TTGTCCAGTGGATCACCCACTTGCGTGATTACGGCGTAGCGCTCGTGGAG
GGTGTGCCGACAGTCCCTGGGACAGTTATGCGCATGGCGGATTTGATTGC
CTACCACCGGAAAACGCACTACGGAGATTCATTTCAGGTTGTCTCAGCGC
GCAAGCCCAAGCACTTAGCGTACACGCCTGTGGAACTCGAAGGTACATTC
TTCTTATTCATTCTTCGTTCCCTCCTTCCTCTTCGTCTTTTCTTTCCCTT
ATTTACATCTTTCTTTGTCCTCTTTGTCTCTCATCCTCCCAACCCAGTTC
ACACAGATCTCAACTACCGCGAGTCCAGCCCGGGCATCCAGCTATTGCAC
TGCCTGGCTTCGGATGCGCAAGGTGGGGAAAGCACGTTTGTGGATGGGTT
TTTGGCGGCGGAGACCTTGCGGCGAGAGAGCCCTGAGGATTTTGCAACAC
TGTGTGAGGTTCCAATCCCGTTCAAGGTCAAGGATGGCTCTGGCTTCCAG
TACTACAAGATTCCTACTATTTGCGTGGACGATGCCGGGCAGTTAGTCGA
GGTTCATTTCAACGAGCGAACGCGCGGGCCTTTAGAGCTACCAGCAGCGG
ACATGGCTCGAGTGTATCGAGCGTTGGCCCACTTTCAAGAGATAGCATGC
CGGCCCGACTTGTGCGTGGAGGTGAAAATGAAAGCAGGGGATATGGTGGC
GTTTAACAACCGCCGGATCCTGCATGGGCGGAAGGCGTTTGATCCGAGGA
CTGGGCTGCGGCATTTGGAAGGAACGTACGTGGACATGGATGAGTTTGGA
TGTTGCTTGCGCAAAAATGGGATAACGCCCTTGGGCATTGTGCGAGCGCA
GGGCGGGCGAGGCGGAAGGGGGATGGAAGGTAGTGAAAGCAAGGGGGGGG
GGAAGAAGAGGGCGCAGAATCAACAGGCATTTGCATTAGCCTCTGTGGCG
TTGACGCAGCTTGGGCAGCAAACAGGGGATGGGAGGCACGGGAAGGCGAC
CGCGCCGCGAGCGTCACTTTGAAAGGCCAGGCAGATATCATGAGATGGCA
GCAGAAAGATATAAAGGAAGCGGTCCGTTGTTGAGAGCAAAGGCAGGTTT
GTTCATGAGATGCATGGTTTGCGAGTTTGTTTTGGAGAAGACGAGGAAAC
ATATGGTTTGTGCGCCGTTTCGAGTATGTGTATGACGTATTGTTTTTGCA
GGTATCTACCTTGGATTGTGATATTCATTCAACGCTGAGCAGCAATTTAA
AAAAATGGGCGTGGAAATATTCAAGTTGTCGAGGAGAGACAGCAATCTTT
GCGTGAGAGCAAGATAGGAAGAGACGAGTTTGTGTAGAAACATGCACATA
CGAGCATGAGTGTAG back to topCoding sequence (CDS) from alignment at scaffold_21:31835..34699- >mRNA_7670 ID=mRNA_7670|Name=jgi.p|Nanoce1779_2|165568|organism=Nannochloropsis oceanica|type=CDS|length=4581bp|location=Sequence derived from alignment at scaffold_21:31835..34699- (Nannochloropsis oceanica)
TTCACACAGATCTCAACTACCGCGAGTCCAGCCCGGGCATCCAGCTATTG
CACTGCCTGGCTTCGGATGCGCAAGGTGGGGAAAGCACGTTTGTGGATGG
GTTTTTGGCGGCGGAGACCTTGCGGCGAGAGAGCCCTGAGGATTTTGCAA
CACTGTGTGAGGTTCCAATCCCGTTCAAGGTCAAGGATGGCTCTGGCTTC
CAGTACTACAAGATTCCTACTATTTGCGTGGACGATGCCGGGCAGTTAGT
CGAGGTTCATTTCAACGAGCGAACGCGCGGGCCTTTAGAGCTACCAGCAG
CGGACATGGCTCGAGTGTATCGAGCGTTGGCCCACTTTCAAGAGATAGCA
TGCCGGCCCGACTTGTGCGTGGAGGTGAAAATGAAAGCAGGGGATATGGT
GGCGTTTAACAACCGCCGGATCCTGCATGGGCGGAAGGCGTTTGATCCGA
GGACTGGGCTGCGGCATTTGGAAGGAACGTACGTGGACATGGATGAGTTT
GGATGTTGCTTGCGCAAAAATGGGATAACGCCCTTGGGCATTGTGCGAGC
GCAGGGCGGGCGAGGCGGAAGGGGGATGGAAGGTAGTGAAAGCAAGGGGG
GGGGGAAGAAGAGGGCGCAGAATCAACAGGCATTTGCATTAGCCTCTGTG
GCGTTGACGCAGCTTGGGCAGCAAACAGGGGATGGGAGGCACGGGAAGGC
GACCGCGCCGCGAGCGTCACTTTGAGTGAAACTGCATCAGGAAGACGGGA
TAGTTGAGGTCGCGTGGCAGGATGGGGCCCGCGGCCTGTTCCATGGCGCA
TGGTTGAGGGACAACTGCTCCAAGTATTTTGACCCTTCCGGCGGGCAGCG
CATTCAAAATACCTTGAATCTCGGAGCCGATGCCTACATCCTTACGCAAG
CAATGTCATCGTCTCTGGCTGGTGAAAATGCGAGCACCCCTTCTTCTTCT
TCTCCCACCACCCCGCATGAGCTCTTCAAAGTGACCTGGAAAGACGGCTT
CTCCCACGCCTTTCCATCCGCGTGGCTTCGTCAACACTGCTTTGAGACCC
GCCAATACCACCATGTTCAGCCCCGATTATGGGGCCGAGATCTGGTGTCT
TATTTTCCTGGGCATGTTCTTCCCACAATTGCCCACAGTGACGTCGTCAA
GGTTGCCGCGGGGAAGGAAGCCGGGTGGGAGGTAGCTGCGCATGGTTTTG
TCCAGTGGATCACCCACTTGCGTGATTACGGCGTAGCGCTCGTGGAGGGT
GTGCCGACAGTCCCTGGGACAGTTATGCGCATGGCGGATTTGATTGCCTA
CCACCGGAAAACGCACTACGGAGATTCATTTCAGGTTGTCTCAGCGCGCA
AGCCCAAGCACTTAGCGTACACGCCTGTGGAACTCGAAGATGTCTTCTAT
TGAAAACCACGCCACCGCCACCCTCCCTCGCCCGGGCATGCCTGCCGTCC
CACTTTCTCCGTCCAGGAAAGCACGTCCTCCAGCAGGACCTGAGTCTCGC
CTTTTAAGCATGCGAAACATCTCCTTGTTCACACAGATCTCAACTACCGC
GAGTCCAGCCCGGGCATCCAGCTATTGCACTGCCTGGCTTCGGATGCGCA
AGGTGGGGAAAGCACGTTTGTGGATGGGTTTTTGGCGGCGGAGACCTTGC
GGCGAGAGAGCCCTGAGGATTTTGCAACACTGTGTGAGGTTCCAATCCCG
TTCAAGGTCAAGGATGGCTCTGGCTTCCAGTACTACAAGATTCCTACTAT
TTGCGTGGACGATGCCGGGCAGTTAGTCGAGGTTCATTTCAACGAGCGAA
CGCGCGGGCCTTTAGAGCTACCAGCAGCGGACATGGCTCGAGTGTATCGA
GCGTTGGCCCACTTTCAAGAGATAGCATGCCGGCCCGACTTGTGCGTGGA
GGTGAAAATGAAAGCAGGGGATATGGTGGCGTTTAACAACCGCCGGATCC
TGCATGGGCGGAAGGCGTTTGATCCGAGGACTGGGCTGCGGCATTTGGAA
GGAACGTACGTGGACATGGATGAGTTTGGATGTTGCTTGCGCAAAAATGG
GATAACGCCCTTGGGCATTGTGCGAGCGCAGGGCGGGCGAGGCGGAAGGG
GGATGGAAGGTAGTGAAAGCAAGGGGGGGGGGAAGAAGAGGGCGCAGAAT
CAACAGGCATTTGCATTAGCCTCTGTGGCGTTGACGCAGCTTGGGCAGCA
AACAGGGGATGGGAGGCACGGGAAGGCGACCGCGCCGCGAGCGTCACTTT
GAGTGAAACTGCATCAGGAAGACGGGATAGTTGAGGTCGCGTGGCAGGAT
GGGGCCCGCGGCCTGTTCCATGGCGCATGGTTGAGGGACAACTGCTCCAA
GTATTTTGACCCTTCCGGCGGGCAGCGCATTCAAAATACCTTGAATCTCG
GAGCCGATGCCTACATCCTTACGCAAGCAATGTCATCGTCTCTGGCTGGT
GAAAATGCGAGCACCCCTTCTTCTTCTTCTCCCACCACCCCGCATGAGCT
CTTCAAAGTGACCTGGAAAGACGGCTTCTCCCACGCCTTTCCATCCGCGT
GGCTTCGTCAACACTGCTTTGAGACCCGCCAATACCACCATGTTCAGCCC
CGATTATGGGGCCGAGATCTGGTGTCTTATTTTCCTGGGCATGTTCTTCC
CACAATTGCCCACAGTGACGTCGTCAAGGTTGCCGCGGGGAAGGAAGCCG
GGTGGGAGGTAGCTGCGCATGGTTTTGTCCAGTGGATCACCCACTTGCGT
GATTACGGCGTAGCGCTCGTGGAGGGTGTGCCGACAGTCCCTGGGACAGT
TATGCGCATGGCGGATTTGATTGCCTACCACCGGAAAACGCACTACGGAG
ATTCATTTCAGGTTGTCTCAGCGCGCAAGCCCAAGCACTTAGCGTACACG
CCTGTGGAACTCGAAGATGTCTTCTATTGAAAACCACGCCACCGCCACCC
TCCCTCGCCCGGGCATGCCTGCCGTCCCACTTTCTCCGTCCAGGAAAGCA
CGTCCTCCAGCAGGACCTGAGTCTCGCCTTTTAAGCATGCGAAACATCTC
CTTGTTCACACAGATCTCAACTACCGCGAGTCCAGCCCGGGCATCCAGCT
ATTGCACTGCCTGGCTTCGGATGCGCAAGGTGGGGAAAGCACGTTTGTGG
ATGGGTTTTTGGCGGCGGAGACCTTGCGGCGAGAGAGCCCTGAGGATTTT
GCAACACTGTGTGAGGTTCCAATCCCGTTCAAGGTCAAGGATGGCTCTGG
CTTCCAGTACTACAAGATTCCTACTATTTGCGTGGACGATGCCGGGCAGT
TAGTCGAGGTTCATTTCAACGAGCGAACGCGCGGGCCTTTAGAGCTACCA
GCAGCGGACATGGCTCGAGTGTATCGAGCGTTGGCCCACTTTCAAGAGAT
AGCATGCCGGCCCGACTTGTGCGTGGAGGTGAAAATGAAAGCAGGGGATA
TGGTGGCGTTTAACAACCGCCGGATCCTGCATGGGCGGAAGGCGTTTGAT
CCGAGGACTGGGCTGCGGCATTTGGAAGGAACGTACGTGGACATGGATGA
GTTTGGATGTTGCTTGCGCAAAAATGGGATAACGCCCTTGGGCATTGTGC
GAGCGCAGGGCGGGCGAGGCGGAAGGGGGATGGAAGGTAGTGAAAGCAAG
GGGGGGGGGAAGAAGAGGGCGCAGAATCAACAGGCATTTGCATTAGCCTC
TGTGGCGTTGACGCAGCTTGGGCAGCAAACAGGGGATGGGAGGCACGGGA
AGGCGACCGCGCCGCGAGCGTCACTTTGAGTGAAACTGCATCAGGAAGAC
GGGATAGTTGAGGTCGCGTGGCAGGATGGGGCCCGCGGCCTGTTCCATGG
CGCATGGTTGAGGGACAACTGCTCCAAGTATTTTGACCCTTCCGGCGGGC
AGCGCATTCAAAATACCTTGAATCTCGGAGCCGATGCCTACATCCTTACG
CAAGCAATGTCATCGTCTCTGGCTGGTGAAAATGCGAGCACCCCTTCTTC
TTCTTCTCCCACCACCCCGCATGAGCTCTTCAAAGTGACCTGGAAAGACG
GCTTCTCCCACGCCTTTCCATCCGCGTGGCTTCGTCAACACTGCTTTGAG
ACCCGCCAATACCACCATGTTCAGCCCCGATTATGGGGCCGAGATCTGGT
GTCTTATTTTCCTGGGCATGTTCTTCCCACAATTGCCCACAGTGACGTCG
TCAAGGTTGCCGCGGGGAAGGAAGCCGGGTGGGAGGTAGCTGCGCATGGT
TTTGTCCAGTGGATCACCCACTTGCGTGATTACGGCGTAGCGCTCGTGGA
GGGTGTGCCGACAGTCCCTGGGACAGTTATGCGCATGGCGGATTTGATTG
CCTACCACCGGAAAACGCACTACGGAGATTCATTTCAGGTTGTCTCAGCG
CGCAAGCCCAAGCACTTAGCGTACACGCCTGTGGAACTCGAAGATGTCTT
CTATTGAAAACCACGCCACCGCCACCCTCCCTCGCCCGGGCATGCCTGCC
GTCCCACTTTCTCCGTCCAGGAAAGCACGTCCTCCAGCAGGACCTGAGTC
TCGCCTTTTAAGCATGCGAAACATCTCCTTG back to top
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