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Properties
Property Name | Value |
TranscriptId | 600741 |
Track | FilteredModels2 |
ProteinId | 600655 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_22 | supercontig | scaffold_22:250404..252348 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7951 ID=mRNA_7951|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp TGCGCCAAGTCGGGAACCCATGCGGGAATCGGGTGGTTGAACTTTGATGA TGCCGCTCTTCCCTGGAGTTGCATTAAAAATTGCACAACCGACAACCCCT TTCGTAATAAGGGGAAGAGAAGGAAACGGACTTTGTCGTACATCTTAAAA CTTTCACCTATAACCATGTTCAGAAAATTTGATTGAGCGGGTCATCGGGG CTTTGCTTGCGCTCATGGCTTGCTCGAAAGCCAGGGCCATCATCTCAGTC CCCGCGTGTGATCCCCTCGTCTCATGAAAAGCCTTCGCGAGCCACATAAT CAAAAAAAAAAAAAAACTAGCTAAGGAACCATCATCCTCTCGGCCGCAGC CAAAGCCGGCCTTAAGGCAACTCCGCACTCTTCCACGCTGCTGGGAGGCC GCAGTTGTATGTAATATTTTTGTGGCCGGGCTGTTTCTCACATCCCCCAG TGCTCCTGCAACAGCTGCGTTCATCCTCTCACTTTCATTTTCTTCCTCGT TCCAACACCACAGACAATTCTTCTTGACATGAAGCCTTATATTGCGGGAA GCGTCGCCACCATGACGACAGCCGTGATATTTTTGGCTGCTGCTCCCCAC TTCGCGCTTGGTGAAGTGCAGCGCATCAAGCTGGCGCCCGGCCCGGCCGG CATGGAAACCTCTCAGATGGGCTTGGGTGCCCTGCACTTTGCGGAGCTAA CGCAGAGCGGCGGGGCTGCGGCGCTCAAGGACTTGCTGAATGTGGCTCTG CAGAACAAGATCACTCTGCTGGACCTGGCCGACATATACGCCTACAATGC GAGCGCCGAGTTGGTGGGGCAGGCGTTTGCCTTACAGCCAGGCCTGCGAG AGAAGTTTCAGATTGTGTACAAGACGGGCATTGTCTTTCCGGACGCGCCC GTCCAGTACCTGGACAATGGGGCTGAATACATGATGCACGCTGTCGACAT TGCCCTGACCCAGCTTGGCACCACCTACCTCGACGTGCTCATGCCGCACG CCCCGGACCCGCTCCTGGACGCGACCGAGCTAGCCATGACCTTCAAGAAG CTCAAGGCTAGCGGCAAGGTCCGCTACTTTGGCGTGTCCAACTTTCCACC AAGCAAACTTGCTTTGCTGCAAGCCGCTATGGAAAAACAGCAGATGAGCC TGACGACGGCCGAACTTGAAATTTCTGTCCTGACCCCCACGGCCTTGTTC GACGGCCGCCTCGACCAGCTCCAGGAGCTCGGCATTGCTGCCTTAGCCTG GGGGCCTCTGGGCGGGGACCCGATGGCCGGTGCCAACCGTCTTTTTAATT TCCCCGAGGGTGCCCGGCAAGGTCGTATTCTGGCGGCCCTCAAGGACGTG GCCTCGCAGATGGGCCCGGCCGTCACACCCGACCAAGTGGCGATCGCATG GCTGCTGCGGCACCCAACGCGCATCGTGCCAGTGATTGGGACGGTGAGGG CAGACCGGCTGAAAGCCCAGGCGGCGGCCACGAACCTGAAGATGACGAGG GCGCAGTGGACGCAGATCATGGGGGCCTCGGCCGTGGCGAACTTCAAGCG GTGGGAGCAACTCAACGATGGGCAGTGGCATGACGTGGCCAACGACTCCC CGAATACCTTCGGCTCGCCACTGGGTGTGGATGTGCCCGTCGGGTTTTGT GACTTTGGGAGCTGCAAGGCGCCGATGGCATGAAGGAAGTGAAGAAAGTG AAGGAGGGGATATTGTTGTACCTTTGATGTAATTGATATGCCATGACAAG TTCTAATGAAGCACGAGCGACACGAGCAGATAAGAGGACGTGGCTGAGGG CACAGGACAAAGACGACTGTGCGCTCTACCGTTGTCCTGCATGTGTCACC TCTGGAGGCAGAGATAAAAAAATCTGCCATGCCGCACACACCGATGTCAT CGAAAAAAGCGAGATAGCAAATTAAAGAATTAGTTTGTTTTTGTG back to topprotein sequence of jgi.p|Nanoce1779_2|600655 >mRNA_7951-protein ID=mRNA_7951-protein|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp MKPYIAGSVATMTTAVIFLAAAPHFALGEVQRIKLAPGPAGMETSQMGLG ALHFAELTQSGGAAALKDLLNVALQNKITLLDLADIYAYNASAELVGQAF ALQPGLREKFQIVYKTGIVFPDAPVQYLDNGAEYMMHAVDIALTQLGTTY LDVLMPHAPDPLLDATELAMTFKKLKASGKVRYFGVSNFPPSKLALLQAA MEKQQMSLTTAELEISVLTPTALFDGRLDQLQELGIAALAWGPLGGDPMA GANRLFNFPEGARQGRILAALKDVASQMGPAVTPDQVAIAWLLRHPTRIV PVIGTVRADRLKAQAAATNLKMTRAQWTQIMGASAVANFKRWEQLNDGQW HDVANDSPNTFGSPLGVDVPVGFCDFGSCKAPMA* back to topmRNA from alignment at scaffold_22:250404..252348+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7951 ID=mRNA_7951|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_22:250404..252348+ (Nannochloropsis oceanica) TGCGCCAAGTCGGGAACCCATGCGGGAATCGGGTGGTTGAACTTTGATGA
TGCCGCTCTTCCCTGGAGTTGCATTAAAAATTGCACAACCGACAACCCCT
TTCGTAATAAGGGGAAGAGAAGGAAACGGACTTTGTCGTACATCTTAAAA
CTTTCACCTATAACCATGTTCAGAAAATTTGATTGAGCGGGTCATCGGGG
CTTTGCTTGCGCTCATGGCTTGCTCGAAAGCCAGGGCCATCATCTCAGTC
CCCGCGTGTGATCCCCTCGTCTCATGAAAAGCCTTCGCGAGCCACATAAT
CAAAAAAAAAAAAAAACTAGCTAAGGAACCATCATCCTCTCGGCCGCAGC
CAAAGCCGGCCTTAAGGCAACTCCGCACTCTTCCACGCTGCTGGGAGGCC
GCAGTTGTATGTAATATTTTTGTGGCCGGGCTGTTTCTCACATCCCCCAG
TGCTCCTGCAACAGCTGCGTTCATCCTCTCACTTTCATTTTCTTCCTCGT
TCCAACACCACAGACAATTCTTCTTGACATGAAGCCTTATATTGCGGGAA
GCGTCGCCACCATGACGACAGCCGTGATATTTTTGGCTGCTGCTCCCCAC
TTCGCGCTTGGTGAAGTGCAGCGCATCAAGCTGGCGCCCGGCCCGGCCGG
CATGGAAACCTCTCAGATGGGCTTGGGTGCCCTGCACTTTGCGGAGCTAA
CGCAGAGCGGCGGGGCTGCGGCGCTCAAGGACTTGCTGAATGTGGCTCTG
CAGAACAAGATCACTCTGCTGGACCTGGCCGACATATACGCCTACAATGC
GAGCGCCGAGTTGGTGGGGCAGGCGTTTGCCTTACAGCCAGGCCTGCGAG
AGAAGTTTCAGATTGTGTACAAGACGGGCATTGTCTTTCCGGACGCGCCC
GTCCAGTACCTGGACAATGGGGCTGAATACATGATGCACGCTGTCGACAT
TGCCCTGACCCAGCTTGGCACCACCTACCTCGACGTGCTCATGCCGCACG
CCCCGGACCCGCTCCTGGACGCGACCGAGCTAGCCATGACCTTCAAGAAG
CTCAAGGCTAGCGGCAAGGTCCGCTACTTTGGCGTGTCCAACTTTCCACC
AAGCAAACTTGCTTTGCTGCAAGCCGCTATGGAAAAACAGCAGATGAGCC
TGACGACGGCCGAACTTGAAATTTCTGTCCTGACCCCCACGGCCTTGTTC
GACGGCCGCCTCGACCAGCTCCAGGAGCTCGGCATTGCTGCCTTAGCCTG
GGGGCCTCTGGGCGGGGACCCGATGGCCGGTGCCAACCGTCTTTTTAATT
TCCCCGAGGGTGCCCGGCAAGGTCGTATTCTGGCGGCCCTCAAGGACGTG
GCCTCGCAGATGGGCCCGGCCGTCACACCCGACCAAGTGGCGATCGCATG
GCTGCTGCGGCACCCAACGCGCATCGTGCCAGTGATTGGGACGGTGAGGG
CAGACCGGCTGAAAGCCCAGGCGGCGGCCACGAACCTGAAGATGACGAGG
GCGCAGTGGACGCAGATCATGGGGGCCTCGGCCGTGGCGAACTTCAAGCG
GTGGGAGCAACTCAACGATGGGCAGTGGCATGACGTGGCCAACGACTCCC
CGAATACCTTCGGCTCGCCACTGGGTGTGGATGTGCCCGTCGGGTTTTGT
GACTTTGGGAGCTGCAAGGCGCCGATGGCATGAAGGAAGTGAAGAAAGTG
AAGGAGGGGATATTGTTGTACCTTTGATGTAATTGATATGCCATGACAAG
TTCTAATGAAGCACGAGCGACACGAGCAGATAAGAGGACGTGGCTGAGGG
CACAGGACAAAGACGACTGTGCGCTCTACCGTTGTCCTGCATGTGTCACC
TCTGGAGGCAGAGATAAAAAAATCTGCCATGCCGCACACACCGATGTCAT
CGAAAAAAGCGAGATAGCAAATTAAAGAATTAGTTTGTTTTTGTG back to topCoding sequence (CDS) from alignment at scaffold_22:250404..252348+ >mRNA_7951 ID=mRNA_7951|Name=jgi.p|Nanoce1779_2|600655|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_22:250404..252348+ (Nannochloropsis oceanica) ATGAAGCCTTATATTGCGGGAAGCGTCGCCACCATGACGACAGCCGTGAT ATTTTTGGCTGCTGCTCCCCACTTCGCGCTTGGTGAAGTGCAGCGCATCA AGCTGGCGCCCGGCCCGGCCGGCATGGAAACCTCTCAGATGGGCTTGGGT GCCCTGCACTTTGCGGAGCTAACGCAGAGCGGCGGGGCTGCGGCGCTCAA GGACTTGCTGAATGTGGCTCTGCAGAACAAGATCACTCTGCTGGACCTGG CCGACATATACGCCTACAATGCGAGCGCCGAGTTGGTGGGGCAGGCGTTT GCCTTACAGCCAGGCCTGCGAGAGAAGTTTCAGATTGTGTACAAGACGGG CATTGTCTTTCCGGACGCGCCCGTCCAGTACCTGGACAATGGGGCTGAAT ACATGATGCACGCTGTCGACATTGCCCTGACCCAGCTTGGCACCACCTAC CTCGACGTGCTCATGCCGCACGCCCCGGACCCGCTCCTGGACGCGACCGA GCTAGCCATGACCTTCAAGAAGCTCAAGGCTAGCGGCAAGGTCCGCTACT TTGGCGTGTCCAACTTTCCACCAAGCAAACTTGCTTTGCTGCAAGCCGCT ATGGAAAAACAGCAGATGAGCCTGACGACGGCCGAACTTGAAATTTCTGT CCTGACCCCCACGGCCTTGTTCGACGGCCGCCTCGACCAGCTCCAGGAGC TCGGCATTGCTGCCTTAGCCTGGGGGCCTCTGGGCGGGGACCCGATGGCC GGTGCCAACCGTCTTTTTAATTTCCCCGAGGGTGCCCGGCAAGGTCGTAT TCTGGCGGCCCTCAAGGACGTGGCCTCGCAGATGGGCCCGGCCGTCACAC CCGACCAAGTGGCGATCGCATGGCTGCTGCGGCACCCAACGCGCATCGTG CCAGTGATTGGGACGGTGAGGGCAGACCGGCTGAAAGCCCAGGCGGCGGC CACGAACCTGAAGATGACGAGGGCGCAGTGGACGCAGATCATGGGGGCCT CGGCCGTGGCGAACTTCAAGCGGTGGGAGCAACTCAACGATGGGCAGTGG CATGACGTGGCCAACGACTCCCCGAATACCTTCGGCTCGCCACTGGGTGT GGATGTGCCCGTCGGGTTTTGTGACTTTGGGAGCTGCAAGGCGCCGATGG CATGA back to top
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