jgi.p|Nanoce1779_2|603905, mRNA_8763 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603905
Unique NamemRNA_8763
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1086
Alignment locationscaffold_28:64924..66219 -

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Properties
Property NameValue
TranscriptId603991
TrackFilteredModels2
ProteinId603905
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:64924..66219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603905gene_8763Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603905mRNA_8763-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8763CDS_8763Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8763 ID=mRNA_8763|Name=jgi.p|Nanoce1779_2|603905|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
GACTCAAAGCATGGGTGGGGACGATGGCTTCTTTAGCCGCACGCTGGAAG
GCGCGCTCACGGGCGGCAGCATCGGAACAGTCGCCGGTACGATGAGCAGT
TTTTGGCAGTCCGCTGGGGTCAAGATGAACCGAGAGCAAGTGGCTCGACA
GGTCCTCCCTACGATTTACGCCAATGCCGGTTTCCTTGCTGGAGCCGGTG
CCACGTTCAAGGCAGGGGAAGCACTGATGGAGACGTGGACGGGCAAGGAG
GGAGAGGCAATTAATAGCGCGTTTGGCGGTGCGTTGAGCGGGGCGTTCGT
CGGCTTCCGTTCAGGTCACCCGGCCATCATTGCAGCGTCAGCGGGGGCCT
GTGCCTTGGTATGCACAGCTATCCACTTAAATGGGGACAAGTTCACATAA
ATTTATAGAAGGAGGGGGGGAGGTATATGAGAGATGGAAAAGAGAAATGA
TGTAAATGTAGGACAGGGTGAGGAGGAGGAAGAGGACGAGGAATGGGAAC
GGGTGAAGGAGGGAGGAAAACGCAATGTGGGACAATAAAAGGCTGGCATT
TTGACACATTCAAGGCATTAGATACGTCTTCATTATTCAATCCTCTCTCT
TCCCCTCGTTCCTTTTTGAGAAAAGTGCGTATATGTGGGGAGGAATGAGG
GAGGAAGTGAAATGAAAGAGCGAAATAGCGAGCGGTTGCTCCCCGTGGAG
GGATGATGCTGGAAAGAAGAAACAGACTACGATAAGAGGATGACGCTGTT
ACACATACTTCCATAAGCATCGTTCTTCCTTCTGCCTGGCGGGAGTCAGT
GCTGAAGAGCACGAGCCAAACCGTATTGCTGCTGCGGCACCTTGTCGCCC
CCCAATCCCCCCAAGAGAATGCAGTCCTTCAAAGCGTCCATACATATGTA
GGTAGAGTGGTGTCCGTGTGTAAGTGTGCACGTCTGAAATATAATCTTTG
GATATACACTCCGGCGAGTCAGCGGAAGGAGCAGGGAAAAAAAAACTCAT
TTTCAGCCCTCAAGTGTGGCTGTACCTTCCCCTTAGCATTAAGAATTATA
AAATTCTCGAAAAATAAATAGAGAAAGACTTTCTCG
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protein sequence of jgi.p|Nanoce1779_2|603905

>mRNA_8763-protein ID=mRNA_8763-protein|Name=jgi.p|Nanoce1779_2|603905|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MGGDDGFFSRTLEGALTGGSIGTVAGTMSSFWQSAGVKMNREQVARQVLP
TIYANAGFLAGAGATFKAGEALMETWTGKEGEAINSAFGGALSGAFVGFR
SGHPAIIAASAGACALVCTAIHLNGDKFT*
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mRNA from alignment at scaffold_28:64924..66219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8763 ID=mRNA_8763|Name=jgi.p|Nanoce1779_2|603905|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp|location=Sequence derived from alignment at scaffold_28:64924..66219- (Nannochloropsis oceanica)
GACTCAAAGCATGGGTGGGGACGATGGCTTCTTTAGCCGCACGCTGGAAG
GCGCGCTCACGGGCGGCAGCATCGGAACAGTCGCCGGTACGATGAGCAGT
TTTTGGCAGTCCGCTGGGGTCAAGATGAACCGAGAGCAAGTGGCTCGACA
GGTCCTCCCTACGATTTACGCCAATGCCGGTTTCCTTGCTGGAGCCGGTG
CCACGTTCAAGGCAGGGGAAGCACTGATGGAGACGTGGACGGGCAAGGAG
GGAGAGGCAATTAATAGCGCGTTTGGCGGTGCGGTGAGTCTTATGTGTGG
GGGTTTGATAGGATCAAGGTTTCCACTCATGATTACTTTGAATGGAGGAT
ATTTCCACTCCCCACCATAAACGATTAGAACCCTGACTTGCAGCTCGCCT
TTCTCTCCAAGTATTCCAGAACCTTTCTGTAATATTCACCAGTTGCTTGT
ATTTTTCTTTCTCCCTCTCTCCTTCCCATATTTCCTCCACCAGTTGAGCG
GGGCGTTCGTCGGCTTCCGTTCAGGTCACCCGGCCATCATTGCAGCGTCA
GCGGGGGCCTGTGCCTTGGTATGCACAGCTATCCACTTAAATGGGGACAA
GTTCACATAAATTTATAGAAGGAGGGGGGGAGGTATATGAGAGATGGAAA
AGAGAAATGATGTAAATGTAGGACAGGGTGAGGAGGAGGAAGAGGACGAG
GAATGGGAACGGGTGAAGGAGGGAGGAAAACGCAATGTGGGACAATAAAA
GGCTGGCATTTTGACACATTCAAGGCATTAGATACGTCTTCATTATTCAA
TCCTCTCTCTTCCCCTCGTTCCTTTTTGAGAAAAGTGCGTATATGTGGGG
AGGAATGAGGGAGGAAGTGAAATGAAAGAGCGAAATAGCGAGCGGTTGCT
CCCCGTGGAGGGATGATGCTGGAAAGAAGAAACAGACTACGATAAGAGGA
TGACGCTGTTACACATACTTCCATAAGCATCGTTCTTCCTTCTGCCTGGC
GGGAGTCAGTGCTGAAGAGCACGAGCCAAACCGTATTGCTGCTGCGGCAC
CTTGTCGCCCCCCAATCCCCCCAAGAGAATGCAGTCCTTCAAAGCGTCCA
TACATATGTAGGTAGAGTGGTGTCCGTGTGTAAGTGTGCACGTCTGAAAT
ATAATCTTTGGATATACACTCCGGCGAGTCAGCGGAAGGAGCAGGGAAAA
AAAAACTCATTTTCAGCCCTCAAGTGTGGCTGTACCTTCCCCTTAGCATT
AAGAATTATAAAATTCTCGAAAAATAAATAGAGAAAGACTTTCTCG
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Coding sequence (CDS) from alignment at scaffold_28:64924..66219-

>mRNA_8763 ID=mRNA_8763|Name=jgi.p|Nanoce1779_2|603905|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_28:64924..66219- (Nannochloropsis oceanica)
TTGAGCGGGGCGTTCGTCGGCTTCCGTTCAGGTCACCCGGCCATCATTGC
AGCGTCAGCGGGGGCCTGTGCCTTGGTATGCACAGCTATCCACTTAAATG
GGGACAAGTTCACATAAATGGGTGGGGACGATGGCTTCTTTAGCCGCACG
CTGGAAGGCGCGCTCACGGGCGGCAGCATCGGAACAGTCGCCGGTACGAT
GAGCAGTTTTTGGCAGTCCGCTGGGGTCAAGATGAACCGAGAGCAAGTGG
CTCGACAGGTCCTCCCTACGATTTACGCCAATGCCGGTTTCCTTGCTGGA
GCCGGTGCCACGTTCAAGGCAGGGGAAGCACTGATGGAGACGTGGACGGG
CAAGGAGGGAGAGGCAATTAATAGCGCGTTTGGCGGTGCGTTGAGCGGGG
CGTTCGTCGGCTTCCGTTCAGGTCACCCGGCCATCATTGCAGCGTCAGCG
GGGGCCTGTGCCTTGGTATGCACAGCTATCCACTTAAATGGGGACAAGTT
CACATAAATGGGTGGGGACGATGGCTTCTTTAGCCGCACGCTGGAAGGCG
CGCTCACGGGCGGCAGCATCGGAACAGTCGCCGGTACGATGAGCAGTTTT
TGGCAGTCCGCTGGGGTCAAGATGAACCGAGAGCAAGTGGCTCGACAGGT
CCTCCCTACGATTTACGCCAATGCCGGTTTCCTTGCTGGAGCCGGTGCCA
CGTTCAAGGCAGGGGAAGCACTGATGGAGACGTGGACGGGCAAGGAGGGA
GAGGCAATTAATAGCGCGTTTGGCGGTGCG
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Synonyms
Publications