jgi.p|Nanoce1779_2|633130, mRNA_8754 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633130
Unique Name	mRNA_8754
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1842
Alignment location	scaffold_28:48320..50161 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633216
Track	FilteredModels2
ProteinId	633130

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:48320..50161 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633130	gene_8754	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633130	mRNA_8754-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8754	CDS_8754	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:48320..50161+
coding sequence from alignment at scaffold_28:48320..50161+

mRNA sequence

>mRNA_8754 ID=mRNA_8754|Name=jgi.p|Nanoce1779_2|633130|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp
ACGAGGGAGAGGTCGAGGGGGAGGAGGAGGATGAGGAAGGGAAGAAACGA
AAGGCTTCCGCCCGCAAAAGGGGATCCGCTGGAGCAGCTGCCACTTCCCC
TCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTCCCTCCCTCCAATC
CCTCCCCCTGGCAAATCCGTCTTTGGGGCGTGGATTGTGAGATGTGCGTC
ACGGCCGCAGGGCTTGAATTAACACGCCTTACGCTCGTGAACGAAATGGG
CGCTGTAGTCTTGGATGAGTATGTGAAGCCCCTGTTGCCCATCCTTGACT
ATCGAACACCCTACAGCGGGATTACCCCGGCGACCCTCGCCAATATCTCC
ACCACTCTTGCCTCTCTCCAACCCCGCCTCCTCGCCCTCCTCTCCGAGAA
ACCCACCTACCTCGTCGGCCATGCCCTTGACGGTGACCTACGTGCTCTTA
AACTCTACCACCCGTACCTCATGGATACTGCCTCCCTCTATCCCCACCCG
AAAGGCTCGCCCTACAAGAAGTCACTCAAAGACCTTGCGCGCACACATTT
GGGAGGGCGGGAGATCCAACAAGGGCATGGCAGCCTGGGACATGATTCGT
ACCAAGACGCGGTAACGGCTCTAGAACTGGCGTTTCTCAAGCTCCTGCAG
GGACACACGTTTGCGGTCCCTGGCCCATGGGGGAGGGAAGAGGGTGGGGA
GGGGGAGGAGGAGGGGGGGGAAGGGAAGGAGGAACCGGTGTTTGGACGGG
TGGTGAGGGAAGGGGGGAGGGTGGTGGTGGTAGGGCCCAGGGAAGGGTGG
GTGCTGGGGGACAGGGAGGGGGAGGGAGGGAGGGAGGAGGCGCCGAGGAT
ATGGTCGTCGTACTCGAGGGGATATCGGAGGGAGGGTGATGCAGTGTGGG
TGGCGGGAGAGGTGAAGAAAGTTTTGCGGGAGAGAGGGAAGGAGGAAGGG
GGGGAGGGAGGGCTAGAGGTGTTTCCTTGTCCGTCGGCTGACGTGATAAT
GACCAAGGCCCTCGAAGCCGTCTCAGGCCCAAGTGGGGGGGAGGGAGGGA
GGGAGGGAGGGGAGGAGGGCAGTATCCACCAGCAGCCCGATCTTTTGTGG
CTAGACCTGCCCTTCCGCGATTACTACTCCCCTTTGGAACCCCCTCCCTT
CTCTACCCCCTCTTCGTCCTCCCCCCCTCCCTCCCTCCCTCCCAGCCCCA
AGCACTTCACCAGCCTCGCGCGAATAGATTGTTTTTTAAGGCAGCTCATG
GAAGGCGCGAAGGAGGGCACTGTCCTCCTTCTCGCTCTCCAGGGCGACCT
TTACCCTGTGTATGACCTGATGGAAGCCAAGCAACGCTGTCGGTGGGACA
CTCCCTCCTCTTCCTCGTCCTCGTCCGGGCCTCAGCACGTAGCGGGGACG
ATTCGAGCGCCTTGGACGGAGGAAGACGAACGCTCACTTGTGGCGCATGC
GGCAGATGCGTTGAACGGTGTGGTGCTGATGGGGGTGAAGAGAGGGAGGG
GGGGAGGGAGGGAGCGAGGGAGGGCAGGGCGAAGGAAAAACAAGTCAAAA
TGAACATGTGAAATAGAACGATAGGGAGGAAATGTATTTTCGGTGGTAAC
TTCAGAGTCTTTGAAAGACACAGAACACATATGGGATGGAAAGAAAGGGA
GGAAGGGAAAGCATTTCAAAGTAACAACAGCAGTGTAATCAAAGCACCAT
TGATGAAAGCGAAAATCTCTTTTAGGCAGGGTGTTCGTGGTCATTTTCCT
TTTCTTTTGCGTCTTTTTTATCCTCTTAGGACTTAGGGCGGTATTTCGTT
CGCGCATGATATTGATGTTTGTCGTGCCCCCACACTTCTGGC

protein sequence of jgi.p|Nanoce1779_2|633130

>mRNA_8754-protein ID=mRNA_8754-protein|Name=jgi.p|Nanoce1779_2|633130|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MCVTAAGLELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLA
NISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLY
PHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLK
LLQGHTFAVPGPWGREEGGEGEEEGGEGKEEPVFGRVVREGGRVVVVGPR
EGWVLGDREGEGGREEAPRIWSSYSRGYRREGDAVWVAGEVKKVLRERGK
EEGGEGGLEVFPCPSADVIMTKALEAVSGPSGGEGGREGGEEGSIHQQPD
LLWLDLPFRDYYSPLEPPPFSTPSSSSPPPSLPPSPKHFTSLARIDCFLR
QLMEGAKEGTVLLLALQGDLYPVYDLMEAKQRCRWDTPSSSSSSSGPQHV
AGTIRAPWTEEDERSLVAHAADALNGVVLMGVKRGRGGGRERGRAGRRKN
KSK*

mRNA from alignment at scaffold_28:48320..50161+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8754 ID=mRNA_8754|Name=jgi.p|Nanoce1779_2|633130|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at scaffold_28:48320..50161+ (Nannochloropsis oceanica)
ACGAGGGAGAGGTCGAGGGGGAGGAGGAGGATGAGGAAGGGAAGAAACGA
AAGGCTTCCGCCCGCAAAAGGGGATCCGCTGGAGCAGCTGCCACTTCCCC
TCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTCCCTCCCTCCAATC
CCTCCCCCTGGCAAATCCGTCTTTGGGGCGTGGATTGTGAGATGTGCGTC
ACGGCCGCAGGGCTTGAATTAACACGCCTTACGCTCGTGAACGAAATGGG
CGCTGTAGTCTTGGATGAGTATGTGAAGCCCCTGTTGCCCATCCTTGACT
ATCGAACACCCTACAGCGGGATTACCCCGGCGACCCTCGCCAATATCTCC
ACCACTCTTGCCTCTCTCCAACCCCGCCTCCTCGCCCTCCTCTCCGAGAA
ACCCACCTACCTCGTCGGCCATGCCCTTGACGGTGACCTACGTGCTCTTA
AACTCTACCACCCGTACCTCATGGATACTGCCTCCCTCTATCCCCACCCG
AAAGGCTCGCCCTACAAGAAGTCACTCAAAGACCTTGCGCGCACACATTT
GGGAGGGCGGGAGATCCAACAAGGGCATGGCAGCCTGGGACATGATTCGT
ACCAAGACGCGGTAACGGCTCTAGAACTGGCGTTTCTCAAGCTCCTGCAG
GGACACACGTTTGCGGTCCCTGGCCCATGGGGGAGGGAAGAGGGTGGGGA
GGGGGAGGAGGAGGGGGGGGAAGGGAAGGAGGAACCGGTGTTTGGACGGG
TGGTGAGGGAAGGGGGGAGGGTGGTGGTGGTAGGGCCCAGGGAAGGGTGG
GTGCTGGGGGACAGGGAGGGGGAGGGAGGGAGGGAGGAGGCGCCGAGGAT
ATGGTCGTCGTACTCGAGGGGATATCGGAGGGAGGGTGATGCAGTGTGGG
TGGCGGGAGAGGTGAAGAAAGTTTTGCGGGAGAGAGGGAAGGAGGAAGGG
GGGGAGGGAGGGCTAGAGGTGTTTCCTTGTCCGTCGGCTGACGTGATAAT
GACCAAGGCCCTCGAAGCCGTCTCAGGCCCAAGTGGGGGGGAGGGAGGGA
GGGAGGGAGGGGAGGAGGGCAGTATCCACCAGCAGCCCGATCTTTTGTGG
CTAGACCTGCCCTTCCGCGATTACTACTCCCCTTTGGAACCCCCTCCCTT
CTCTACCCCCTCTTCGTCCTCCCCCCCTCCCTCCCTCCCTCCCAGCCCCA
AGCACTTCACCAGCCTCGCGCGAATAGATTGTTTTTTAAGGCAGCTCATG
GAAGGCGCGAAGGAGGGCACTGTCCTCCTTCTCGCTCTCCAGGGCGACCT
TTACCCTGTGTATGACCTGATGGAAGCCAAGCAACGCTGTCGGTGGGACA
CTCCCTCCTCTTCCTCGTCCTCGTCCGGGCCTCAGCACGTAGCGGGGACG
ATTCGAGCGCCTTGGACGGAGGAAGACGAACGCTCACTTGTGGCGCATGC
GGCAGATGCGTTGAACGGTGTGGTGCTGATGGGGGTGAAGAGAGGGAGGG
GGGGAGGGAGGGAGCGAGGGAGGGCAGGGCGAAGGAAAAACAAGTCAAAA
TGAACATGTGAAATAGAACGATAGGGAGGAAATGTATTTTCGGTGGTAAC
TTCAGAGTCTTTGAAAGACACAGAACACATATGGGATGGAAAGAAAGGGA
GGAAGGGAAAGCATTTCAAAGTAACAACAGCAGTGTAATCAAAGCACCAT
TGATGAAAGCGAAAATCTCTTTTAGGCAGGGTGTTCGTGGTCATTTTCCT
TTTCTTTTGCGTCTTTTTTATCCTCTTAGGACTTAGGGCGGTATTTCGTT
CGCGCATGATATTGATGTTTGTCGTGCCCCCACACTTCTGGC

Coding sequence (CDS) from alignment at scaffold_28:48320..50161+

>mRNA_8754 ID=mRNA_8754|Name=jgi.p|Nanoce1779_2|633130|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_28:48320..50161+ (Nannochloropsis oceanica)
ATGTGCGTCACGGCCGCAGGGCTTGAATTAACACGCCTTACGCTCGTGAA
CGAAATGGGCGCTGTAGTCTTGGATGAGTATGTGAAGCCCCTGTTGCCCA
TCCTTGACTATCGAACACCCTACAGCGGGATTACCCCGGCGACCCTCGCC
AATATCTCCACCACTCTTGCCTCTCTCCAACCCCGCCTCCTCGCCCTCCT
CTCCGAGAAACCCACCTACCTCGTCGGCCATGCCCTTGACGGTGACCTAC
GTGCTCTTAAACTCTACCACCCGTACCTCATGGATACTGCCTCCCTCTAT
CCCCACCCGAAAGGCTCGCCCTACAAGAAGTCACTCAAAGACCTTGCGCG
CACACATTTGGGAGGGCGGGAGATCCAACAAGGGCATGGCAGCCTGGGAC
ATGATTCGTACCAAGACGCGGTAACGGCTCTAGAACTGGCGTTTCTCAAG
CTCCTGCAGGGACACACGTTTGCGGTCCCTGGCCCATGGGGGAGGGAAGA
GGGTGGGGAGGGGGAGGAGGAGGGGGGGGAAGGGAAGGAGGAACCGGTGT
TTGGACGGGTGGTGAGGGAAGGGGGGAGGGTGGTGGTGGTAGGGCCCAGG
GAAGGGTGGGTGCTGGGGGACAGGGAGGGGGAGGGAGGGAGGGAGGAGGC
GCCGAGGATATGGTCGTCGTACTCGAGGGGATATCGGAGGGAGGGTGATG
CAGTGTGGGTGGCGGGAGAGGTGAAGAAAGTTTTGCGGGAGAGAGGGAAG
GAGGAAGGGGGGGAGGGAGGGCTAGAGGTGTTTCCTTGTCCGTCGGCTGA
CGTGATAATGACCAAGGCCCTCGAAGCCGTCTCAGGCCCAAGTGGGGGGG
AGGGAGGGAGGGAGGGAGGGGAGGAGGGCAGTATCCACCAGCAGCCCGAT
CTTTTGTGGCTAGACCTGCCCTTCCGCGATTACTACTCCCCTTTGGAACC
CCCTCCCTTCTCTACCCCCTCTTCGTCCTCCCCCCCTCCCTCCCTCCCTC
CCAGCCCCAAGCACTTCACCAGCCTCGCGCGAATAGATTGTTTTTTAAGG
CAGCTCATGGAAGGCGCGAAGGAGGGCACTGTCCTCCTTCTCGCTCTCCA
GGGCGACCTTTACCCTGTGTATGACCTGATGGAAGCCAAGCAACGCTGTC
GGTGGGACACTCCCTCCTCTTCCTCGTCCTCGTCCGGGCCTCAGCACGTA
GCGGGGACGATTCGAGCGCCTTGGACGGAGGAAGACGAACGCTCACTTGT
GGCGCATGCGGCAGATGCGTTGAACGGTGTGGTGCTGATGGGGGTGAAGA
GAGGGAGGGGGGGAGGGAGGGAGCGAGGGAGGGCAGGGCGAAGGAAAAAC
AAGTCAAAATGA

Synonyms

Publications